BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0290.0060.p (542 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KG09.1 B3KG09_9BACI Chaperone protein DnaK EC=1.3.1.74 867 0.0 B1DFS0.1 B1DFS0_9BACL Chaperone protein DnaK EC=1.3.1.74 829 0.0 Q9LCQ5.1 DNAK_BRECH Chaperone protein dnaK 746 0.0 C0ZB48.1 DNAK_BREBN Chaperone protein dnaK 738 0.0 Q9KD72.3 DNAK_BACHD Chaperone protein dnaK 738 0.0 >B3KG09.1 B3KG09_9BACI Chaperone protein DnaK EC=1.3.1.74 Length = 612 Score = 867 bits (2240), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/502 (85%), Positives = 455/502 (90%) Query: 1 MGTNHKESIDGKDYSAQEISAMILQKLKSDAEAYLGQPVTQAVITVPAYFNDSQRQATKD 60 MGTNHKESIDGKDY+ QEISA+ILQKLKSDAEAYLGQPVTQAVITVPAYFNDSQRQATKD Sbjct: 73 MGTNHKESIDGKDYTPQEISAIILQKLKSDAEAYLGQPVTQAVITVPAYFNDSQRQATKD 132 Query: 61 AGKIAGLEVLRIVNEPTAAALAYGLEKSEDQTILVYDLGGGTFDVSILELGDGFFEVKAT 120 AGKIAGLEVLRIVNEPTAAALAYG+EKSEDQTILVYDLGGGTFDVSILELGDGFFEVKAT Sbjct: 133 AGKIAGLEVLRIVNEPTAAALAYGMEKSEDQTILVYDLGGGTFDVSILELGDGFFEVKAT 192 Query: 121 SGDNRLGGDDFDQVVMDYLVAEFKKEQGIDLSKDKAAVQRLKDXXXXXXXXLSGVLTTTV 180 SGDN+LGGDDFDQV++DYLVAEFKKEQGIDLSKDKAAVQRLKD LSGVLTTT+ Sbjct: 193 SGDNQLGGDDFDQVIIDYLVAEFKKEQGIDLSKDKAAVQRLKDAAEKAKKELSGVLTTTI 252 Query: 181 SLPFITVVDGVPQHLEVNLTRAKFDELTAGLVERTLGPTRQALSDAGMTPADLNRIVLVG 240 SLPFITV DGVPQHLE+NLTRAKF+EL+A LVERTLGPTRQALSDAG+T D+++IVLVG Sbjct: 253 SLPFITVADGVPQHLEINLTRAKFEELSASLVERTLGPTRQALSDAGLTANDIHKIVLVG 312 Query: 241 GSTRIPAVQDAIKKLTGKEPHKGVNPDEXXXXXXXXXXXXXTGDVKDVVLLDVTPLSLGI 300 GSTRIPAVQ+AIKKLTGKEPHKGVNPDE TGDVKDVVLLDVTPLSLGI Sbjct: 313 GSTRIPAVQEAIKKLTGKEPHKGVNPDEVVALGAAVQAGVLTGDVKDVVLLDVTPLSLGI 372 Query: 301 ETAGGVFTKMIERNTTIPTSKSQVFSTFADNQPSVEIHVLQGERQMANGNKTLGRFMLNE 360 ETAGGVFTKMI+RNTTIPTSKSQVFST+ADNQPSVEIHVLQGER+MA GNKTLGRFML + Sbjct: 373 ETAGGVFTKMIDRNTTIPTSKSQVFSTYADNQPSVEIHVLQGEREMAAGNKTLGRFMLGD 432 Query: 361 IPPAPRGVPQIEVTFDIDANGIVNVSATDKGTNKSQKITITSSSGLSDAEVEQMMKDAEL 420 IPPAPRGVPQIEVTFDIDANGIVNVSATDKGT KSQKITITSSSGLSDAEVEQMMKDAEL Sbjct: 433 IPPAPRGVPQIEVTFDIDANGIVNVSATDKGTGKSQKITITSSSGLSDAEVEQMMKDAEL 492 Query: 421 HAEEDRKRKELVEAKNSADQLVYSTDKVIKDLGDKADASEVXXXXXXXXXXXXXXETDNL 480 HAEEDRKRKELVEA+N+ADQLVY+T+K +KDLGDK DASEV E+DNL Sbjct: 493 HAEEDRKRKELVEARNNADQLVYTTEKTLKDLGDKVDASEVEKANEAKDKVKKALESDNL 552 Query: 481 EEINAATEALTEIVQQLSVKLY 502 EEINA+ E LT+IVQQLSVKLY Sbjct: 553 EEINASVEELTQIVQQLSVKLY 574 >B1DFS0.1 B1DFS0_9BACL Chaperone protein DnaK EC=1.3.1.74 Length = 614 Score = 829 bits (2142), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/502 (81%), Positives = 445/502 (88%) Query: 1 MGTNHKESIDGKDYSAQEISAMILQKLKSDAEAYLGQPVTQAVITVPAYFNDSQRQATKD 60 MGTNHKE IDGK+Y+AQEISA+ILQKLKSDAEAYLGQ VTQAVITVPAYFNDSQRQATKD Sbjct: 73 MGTNHKEVIDGKEYTAQEISAIILQKLKSDAEAYLGQSVTQAVITVPAYFNDSQRQATKD 132 Query: 61 AGKIAGLEVLRIVNEPTAAALAYGLEKSEDQTILVYDLGGGTFDVSILELGDGFFEVKAT 120 AGKIAGLEVLRIVNEPTAAALAYGLEK+EDQTILVYDLGGGTFDVSILELGDGFFEVKAT Sbjct: 133 AGKIAGLEVLRIVNEPTAAALAYGLEKTEDQTILVYDLGGGTFDVSILELGDGFFEVKAT 192 Query: 121 SGDNRLGGDDFDQVVMDYLVAEFKKEQGIDLSKDKAAVQRLKDXXXXXXXXLSGVLTTTV 180 SGDN+LGGDDFDQV++DYLVAEFKKEQG+DLSKDKAAVQRLKD LSGV++TT+ Sbjct: 193 SGDNKLGGDDFDQVIIDYLVAEFKKEQGVDLSKDKAAVQRLKDAAEKAKKDLSGVMSTTI 252 Query: 181 SLPFITVVDGVPQHLEVNLTRAKFDELTAGLVERTLGPTRQALSDAGMTPADLNRIVLVG 240 SLPFIT+ DGVPQHLE+NLTRAKF+EL+A LVER+L PTRQALSD+G++ + ++++VLVG Sbjct: 253 SLPFITMADGVPQHLELNLTRAKFEELSAHLVERSLAPTRQALSDSGLSVSQIDKVVLVG 312 Query: 241 GSTRIPAVQDAIKKLTGKEPHKGVNPDEXXXXXXXXXXXXXTGDVKDVVLLDVTPLSLGI 300 GSTRIPAVQ+A+KKL GKEPHKGVNPDE TGDVKDVVLLDVTPLSLGI Sbjct: 313 GSTRIPAVQEAVKKLIGKEPHKGVNPDEVVALGAAVQAGVLTGDVKDVVLLDVTPLSLGI 372 Query: 301 ETAGGVFTKMIERNTTIPTSKSQVFSTFADNQPSVEIHVLQGERQMANGNKTLGRFMLNE 360 ETAGGVFTKMI+RNTTIPTSKSQVFST+ADNQP VEIHVLQGERQMA GNKTLGRF LN+ Sbjct: 373 ETAGGVFTKMIDRNTTIPTSKSQVFSTYADNQPGVEIHVLQGERQMAAGNKTLGRFTLND 432 Query: 361 IPPAPRGVPQIEVTFDIDANGIVNVSATDKGTNKSQKITITSSSGLSDAEVEQMMKDAEL 420 IP APRGVPQIEVTFDIDANGIVNVSA DKGT KSQKITITSS GLS+AE+EQMMKDAEL Sbjct: 433 IPLAPRGVPQIEVTFDIDANGIVNVSALDKGTGKSQKITITSSGGLSEAEIEQMMKDAEL 492 Query: 421 HAEEDRKRKELVEAKNSADQLVYSTDKVIKDLGDKADASEVXXXXXXXXXXXXXXETDNL 480 +AEEDRKR+ELVEAKNSADQLVYS DK +KDLGDK DASE+ TD+L Sbjct: 493 NAEEDRKRRELVEAKNSADQLVYSVDKTLKDLGDKVDASEIEKANAAKEKVTSAVATDDL 552 Query: 481 EEINAATEALTEIVQQLSVKLY 502 E+I ATE LTEIVQQLSVKLY Sbjct: 553 EQITKATEELTEIVQQLSVKLY 574 >Q9LCQ5.1 DNAK_BRECH Chaperone protein dnaK Length = 610 Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/502 (72%), Positives = 426/502 (84%) Query: 1 MGTNHKESIDGKDYSAQEISAMILQKLKSDAEAYLGQPVTQAVITVPAYFNDSQRQATKD 60 MGT+HKE+++G +Y+ Q+ISAMILQKLKSDAEAYLG+ VTQAVITVPAYFNDSQRQATKD Sbjct: 72 MGTSHKETLEGNEYTPQQISAMILQKLKSDAEAYLGESVTQAVITVPAYFNDSQRQATKD 131 Query: 61 AGKIAGLEVLRIVNEPTAAALAYGLEKSEDQTILVYDLGGGTFDVSILELGDGFFEVKAT 120 AGKIAGLEVLRIVNEPTAAALAYG+EKSEDQT+LV+DLGGGTFDVSILEL +GFFEVKAT Sbjct: 132 AGKIAGLEVLRIVNEPTAAALAYGMEKSEDQTVLVFDLGGGTFDVSILELSEGFFEVKAT 191 Query: 121 SGDNRLGGDDFDQVVMDYLVAEFKKEQGIDLSKDKAAVQRLKDXXXXXXXXLSGVLTTTV 180 SGDN+LGGDDFDQVVMDYLV+EFKKE GIDLSKD+ A QRLKD LSGVLTTT+ Sbjct: 192 SGDNKLGGDDFDQVVMDYLVSEFKKEHGIDLSKDRMAQQRLKDAAEKAKKDLSGVLTTTI 251 Query: 181 SLPFITVVDGVPQHLEVNLTRAKFDELTAGLVERTLGPTRQALSDAGMTPADLNRIVLVG 240 SLPFIT P+HLE+NLTRAKF+EL++ LVERT+GPTRQAL+DAG+TP ++++++LVG Sbjct: 252 SLPFITADATGPKHLEMNLTRAKFEELSSNLVERTMGPTRQALNDAGLTPNEIDKVILVG 311 Query: 241 GSTRIPAVQDAIKKLTGKEPHKGVNPDEXXXXXXXXXXXXXTGDVKDVVLLDVTPLSLGI 300 GSTRIPAVQ+AIKK TGKEPHKGVNPDE TGDVKDVVLLDVTPLSLGI Sbjct: 312 GSTRIPAVQEAIKKFTGKEPHKGVNPDEVVALGAAVQAGVLTGDVKDVVLLDVTPLSLGI 371 Query: 301 ETAGGVFTKMIERNTTIPTSKSQVFSTFADNQPSVEIHVLQGERQMANGNKTLGRFMLNE 360 ET GGVFTK+I+RNTTIPTSKSQVFST ADNQP VEIHVLQGERQMA NKTLGRF LN+ Sbjct: 372 ETLGGVFTKLIDRNTTIPTSKSQVFSTAADNQPGVEIHVLQGERQMAADNKTLGRFNLND 431 Query: 361 IPPAPRGVPQIEVTFDIDANGIVNVSATDKGTNKSQKITITSSSGLSDAEVEQMMKDAEL 420 IPPAPRGVPQIEV+FDIDANGIVNV A D GT K Q+ITIT+SSGLSD E+++M+K+AEL Sbjct: 432 IPPAPRGVPQIEVSFDIDANGIVNVRAKDLGTGKEQRITITASSGLSDEEIDRMVKEAEL 491 Query: 421 HAEEDRKRKELVEAKNSADQLVYSTDKVIKDLGDKADASEVXXXXXXXXXXXXXXETDNL 480 +AE D++RKE VE +N ADQLV++T+K +K++ K D +E+ E ++ Sbjct: 492 NAEADKQRKEQVEIRNEADQLVFTTEKTLKEVEGKVDQAEIDRANAAKDKVKKALEGGSI 551 Query: 481 EEINAATEALTEIVQQLSVKLY 502 +EI +A + L+EIVQQ+SVKLY Sbjct: 552 DEIKSAKDELSEIVQQISVKLY 573 >C0ZB48.1 DNAK_BREBN Chaperone protein dnaK Length = 609 Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/502 (72%), Positives = 421/502 (83%) Query: 1 MGTNHKESIDGKDYSAQEISAMILQKLKSDAEAYLGQPVTQAVITVPAYFNDSQRQATKD 60 MG+ HKE+++G Y+ ++ISAMILQKLK+DAEAYLGQ VTQAVITVPAYFNDSQRQATKD Sbjct: 72 MGSAHKETLEGNQYTPEQISAMILQKLKADAEAYLGQSVTQAVITVPAYFNDSQRQATKD 131 Query: 61 AGKIAGLEVLRIVNEPTAAALAYGLEKSEDQTILVYDLGGGTFDVSILELGDGFFEVKAT 120 AGKIAGLEVLRIVNEPTAAALAYG+EK+EDQT+LV+DLGGGTFDVSILEL DGFFEVKAT Sbjct: 132 AGKIAGLEVLRIVNEPTAAALAYGMEKTEDQTVLVFDLGGGTFDVSILELSDGFFEVKAT 191 Query: 121 SGDNRLGGDDFDQVVMDYLVAEFKKEQGIDLSKDKAAVQRLKDXXXXXXXXLSGVLTTTV 180 SGDN+LGGDDFD VVM+YLV+EFKKE GIDLSKD+ A QRLKD LSGVLTTT+ Sbjct: 192 SGDNKLGGDDFDDVVMNYLVSEFKKEHGIDLSKDRMAQQRLKDAAEKAKKDLSGVLTTTI 251 Query: 181 SLPFITVVDGVPQHLEVNLTRAKFDELTAGLVERTLGPTRQALSDAGMTPADLNRIVLVG 240 SLPFIT P+HLE+NLTRAKF+EL+A LVERT+GPTRQAL DAG+TP++L+R++LVG Sbjct: 252 SLPFITADATGPKHLEMNLTRAKFEELSAELVERTMGPTRQALKDAGLTPSELDRVILVG 311 Query: 241 GSTRIPAVQDAIKKLTGKEPHKGVNPDEXXXXXXXXXXXXXTGDVKDVVLLDVTPLSLGI 300 GSTRIPAVQ+AIKK TGKEPHKGVNPDE TGDVKDVVLLDVTPLSLGI Sbjct: 312 GSTRIPAVQEAIKKFTGKEPHKGVNPDEVVALGAAVQAGVLTGDVKDVVLLDVTPLSLGI 371 Query: 301 ETAGGVFTKMIERNTTIPTSKSQVFSTFADNQPSVEIHVLQGERQMANGNKTLGRFMLNE 360 ET GGVFTK+I+RNTTIPTSKSQVFST ADNQ SVEIHVLQGERQMA NK+LGRF L++ Sbjct: 372 ETLGGVFTKLIDRNTTIPTSKSQVFSTAADNQTSVEIHVLQGERQMAGDNKSLGRFNLSD 431 Query: 361 IPPAPRGVPQIEVTFDIDANGIVNVSATDKGTNKSQKITITSSSGLSDAEVEQMMKDAEL 420 IPPAPRG+PQIEV+FDIDANGIVNV A D GT K Q+ITITS+SGLSD ++++M+KDAEL Sbjct: 432 IPPAPRGIPQIEVSFDIDANGIVNVRAKDLGTGKEQRITITSNSGLSDDDIDRMVKDAEL 491 Query: 421 HAEEDRKRKELVEAKNSADQLVYSTDKVIKDLGDKADASEVXXXXXXXXXXXXXXETDNL 480 +AE D++RKE VE +N ADQLV++T+K +K++ K D +E+ E N Sbjct: 492 NAEADKQRKEQVEVRNEADQLVFTTEKTLKEVEGKIDQAEIDRANAAKDKVKAALEGSNF 551 Query: 481 EEINAATEALTEIVQQLSVKLY 502 EEI A + L+EI+QQ+SVKLY Sbjct: 552 EEIKTAKDELSEIIQQISVKLY 573 >Q9KD72.3 DNAK_BACHD Chaperone protein dnaK Length = 614 Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/502 (72%), Positives = 419/502 (83%) Query: 1 MGTNHKESIDGKDYSAQEISAMILQKLKSDAEAYLGQPVTQAVITVPAYFNDSQRQATKD 60 MGTNHKE+I+GK+Y+ QEISA+ILQKLKSDAEAYLG+ VT+AVITVPAYFNDSQRQATKD Sbjct: 71 MGTNHKENIEGKEYTPQEISAIILQKLKSDAEAYLGEEVTKAVITVPAYFNDSQRQATKD 130 Query: 61 AGKIAGLEVLRIVNEPTAAALAYGLEKSEDQTILVYDLGGGTFDVSILELGDGFFEVKAT 120 AGKIAGLEV RIVNEPTAAALAYGL+K +DQTILVYDLGGGTFDVSILELGDGFFEVKAT Sbjct: 131 AGKIAGLEVERIVNEPTAAALAYGLDKEDDQTILVYDLGGGTFDVSILELGDGFFEVKAT 190 Query: 121 SGDNRLGGDDFDQVVMDYLVAEFKKEQGIDLSKDKAAVQRLKDXXXXXXXXLSGVLTTTV 180 SGDN+LGGDDFDQV++D+L+AEFKKE GIDLS+DK A+QRLKD LSGV +T + Sbjct: 191 SGDNKLGGDDFDQVIIDHLIAEFKKENGIDLSQDKMAMQRLKDAAEKAKKDLSGVTSTQI 250 Query: 181 SLPFITVVDGVPQHLEVNLTRAKFDELTAGLVERTLGPTRQALSDAGMTPADLNRIVLVG 240 SLPFIT P+HLE+ LTRAKF+EL++ LVERTLGPTRQAL D+G++ ++++++VLVG Sbjct: 251 SLPFITADATGPKHLELTLTRAKFEELSSHLVERTLGPTRQALQDSGLSASEIDKVVLVG 310 Query: 241 GSTRIPAVQDAIKKLTGKEPHKGVNPDEXXXXXXXXXXXXXTGDVKDVVLLDVTPLSLGI 300 GSTRIPAVQ+AIK LTGKEPHKGVNPDE TGDVKDVVLLDVTPLSLGI Sbjct: 311 GSTRIPAVQEAIKNLTGKEPHKGVNPDEVVALGAAVQAGVLTGDVKDVVLLDVTPLSLGI 370 Query: 301 ETAGGVFTKMIERNTTIPTSKSQVFSTFADNQPSVEIHVLQGERQMANGNKTLGRFMLNE 360 ET GGVFTK+IERNTTIPTSKSQ+FST ADNQPSV+IHVLQGER+MA NKTLGRF L + Sbjct: 371 ETMGGVFTKLIERNTTIPTSKSQIFSTAADNQPSVDIHVLQGEREMAADNKTLGRFQLTD 430 Query: 361 IPPAPRGVPQIEVTFDIDANGIVNVSATDKGTNKSQKITITSSSGLSDAEVEQMMKDAEL 420 IPPAPRGVPQIEVTFDIDANGIVNV A D GTNK Q ITITSSSGL+D E++QM+KDAE Sbjct: 431 IPPAPRGVPQIEVTFDIDANGIVNVKAKDLGTNKEQSITITSSSGLTDEEIDQMVKDAEA 490 Query: 421 HAEEDRKRKELVEAKNSADQLVYSTDKVIKDLGDKADASEVXXXXXXXXXXXXXXETDNL 480 +AE D+KR+E VE +N ADQLV++T+K +KDLGD D +E E +N+ Sbjct: 491 NAEADKKRREEVELRNEADQLVFTTEKTLKDLGDNVDEAEKTKAEEAKEKLKKAIEANNI 550 Query: 481 EEINAATEALTEIVQQLSVKLY 502 +EI A E L ++VQ L+ KLY Sbjct: 551 DEIRTAKEELQQVVQALTTKLY 572 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.311 0.130 0.350 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,591,307,735 Number of extensions: 104011111 Number of successful extensions: 275777 Number of sequences better than 1.0e-05: 8624 Number of HSP's gapped: 259475 Number of HSP's successfully gapped: 8775 Length of query: 542 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 401 Effective length of database: 1,732,333,088 Effective search space: 694665568288 Effective search space used: 694665568288 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 134 (56.2 bits)