BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0290.0059.p
         (81 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q4ETY1.1 Q4ETY1_LISMO Putative uncharacterized protein                 72   2e-11
Q4EGL3.1 Q4EGL3_LISMO Putative uncharacterized protein                 67   5e-10
Q8RH06.1 Q8RH06_FUSNN Putative uncharacterized protein FN0115          63   1e-08
Q3XWY0.1 Q3XWY0_ENTFC Putative uncharacterized protein (Fragment)      58   3e-07
A0NUH2.1 A0NUH2_9RHOB Putative uncharacterized protein                 54   5e-06

>Q4ETY1.1 Q4ETY1_LISMO Putative uncharacterized protein
          Length = 79

 Score = 71.6 bits (174), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 39/48 (81%)

Query: 32 FLKPTTEGVVRAPSGFGITTASPPSITATQELVVPKSIPITLLTVSAS 79
          FLKPTTEGVVRAPSG GI  ASPPS TAT E VVPKSIPI LL V +S
Sbjct: 24 FLKPTTEGVVRAPSGLGIILASPPSNTATAEFVVPKSIPIILLIVISS 71


>Q4EGL3.1 Q4EGL3_LISMO Putative uncharacterized protein
          Length = 55

 Score = 67.0 bits (162), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/47 (74%), Positives = 38/47 (80%)

Query: 33 LKPTTEGVVRAPSGFGITTASPPSITATQELVVPKSIPITLLTVSAS 79
          +KPTTEGVVRAPSG G+  ASPPS TAT E VVPKSIPI LL V +S
Sbjct: 1  MKPTTEGVVRAPSGLGMIFASPPSNTATAEFVVPKSIPIILLIVISS 47


>Q8RH06.1 Q8RH06_FUSNN Putative uncharacterized protein FN0115
          Length = 98

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/43 (74%), Positives = 35/43 (81%)

Query: 36 TTEGVVRAPSGFGITTASPPSITATQELVVPKSIPITLLTVSA 78
          TT+GVV APS FGI  A PPSITATQE VVPKSIPI LL +S+
Sbjct: 31 TTDGVVLAPSEFGIIVALPPSITATQEFVVPKSIPIILLILSS 73


>Q3XWY0.1 Q3XWY0_ENTFC Putative uncharacterized protein (Fragment)
          Length = 59

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/48 (66%), Positives = 35/48 (72%)

Query: 32 FLKPTTEGVVRAPSGFGITTASPPSITATQELVVPKSIPITLLTVSAS 79
          FL  TTEGVVR PSG  +  AS PS TAT ELVVPKSIPI LL ++ S
Sbjct: 9  FLNDTTEGVVRFPSGLAMIFASFPSNTATAELVVPKSIPIILLIINVS 56


>A0NUH2.1 A0NUH2_9RHOB Putative uncharacterized protein
          Length = 98

 Score = 53.9 bits (128), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/49 (61%), Positives = 36/49 (73%), Gaps = 1/49 (2%)

Query: 34 KPTTEGVVRAPSGFGITTASPPSITATQELVVPKSIPITL-LTVSASSK 81
          K T +GVVRAPS F IT  S PS+TAT E VVP+SIP+T  ++ S SSK
Sbjct: 24 KATIDGVVRAPSAFSITLESLPSMTATHEFVVPRSIPMTFAISASLSSK 72


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 407,411,489
Number of extensions: 12514143
Number of successful extensions: 27497
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 27497
Number of HSP's successfully gapped: 6
Length of query: 81
Length of database: 3,060,696,203
Length adjustment: 51
Effective length of query: 30
Effective length of database: 2,580,224,438
Effective search space: 77406733140
Effective search space used: 77406733140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)