BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0290.0058.p
         (196 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KG08.1 B3KG08_9BACI Protein grpE                                    195   2e-48
B1DFS1.1 B1DFS1_9BACL Protein grpE                                    185   2e-45
Q24SS2.1 Q24SS2_DESHY Protein grpE                                    158   3e-37
B8FUN5.1 B8FUN5_DESHD Protein grpE                                    158   3e-37
C0ZB47.1 C0ZB47_BREBN GrpE protein                                    145   2e-33

>B3KG08.1 B3KG08_9BACI Protein grpE
          Length = 204

 Score =  195 bits (496), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 92/133 (69%), Positives = 107/133 (80%)

Query: 64  RVLRVQADFDNFRRRTQKEKEELAQYATSKLVGELLPVLDNFERAIATVPATPEFEAFNK 123
           R LRVQADFDNFRRRTQKEKE+L +YA+SKL+ ELLPV+DNFERA+      PEFE+F+K
Sbjct: 72  RTLRVQADFDNFRRRTQKEKEDLGKYASSKLITELLPVIDNFERALQASEENPEFESFSK 131

Query: 124 GVNMIFQQLEGVLKSEGLAAMETVGQPFNPEYHQAIMQXXXXXXXXXXXXXXXQKGYLLK 183
           GVNMIF+QLE VL +EGL+AM++VG+PFNPEYHQAIMQ               QKGY+LK
Sbjct: 132 GVNMIFRQLESVLATEGLSAMKSVGEPFNPEYHQAIMQVESDEYEEGIVVEEVQKGYMLK 191

Query: 184 DKVLRPAMVKVSM 196
           DKVLRPAMVKVSM
Sbjct: 192 DKVLRPAMVKVSM 204


>B1DFS1.1 B1DFS1_9BACL Protein grpE
          Length = 179

 Score =  185 bits (470), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/142 (63%), Positives = 108/142 (76%)

Query: 54  LQELADEYQGRVLRVQADFDNFRRRTQKEKEELAQYATSKLVGELLPVLDNFERAIATVP 113
           L +LA+E Q R LR QADFDNFRRRTQKEKE+LAQYA+ KL+G+LLPV+DNFERA+A   
Sbjct: 37  LTKLAEENQQRYLRAQADFDNFRRRTQKEKEDLAQYASMKLIGQLLPVVDNFERAVAAAS 96

Query: 114 ATPEFEAFNKGVNMIFQQLEGVLKSEGLAAMETVGQPFNPEYHQAIMQXXXXXXXXXXXX 173
           A  +FEA  KGV+MIF+QLE  L+ EGL AM+ VG+PFNPE+HQAIM             
Sbjct: 97  ANQDFEALAKGVDMIFRQLEQTLQQEGLKAMDAVGEPFNPEFHQAIMTVESDEHEEGIIV 156

Query: 174 XXXQKGYLLKDKVLRPAMVKVS 195
              QKGY+LK++VLRPAMVKVS
Sbjct: 157 EEVQKGYILKERVLRPAMVKVS 178


>Q24SS2.1 Q24SS2_DESHY Protein grpE
          Length = 212

 Score =  158 bits (399), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 73/138 (52%), Positives = 101/138 (73%)

Query: 58  ADEYQGRVLRVQADFDNFRRRTQKEKEELAQYATSKLVGELLPVLDNFERAIATVPATPE 117
           A+EY   + R+QA+FDN+R+RTQKEKE+ A+YA+ ++V  LLPVLDNFERA+     T +
Sbjct: 74  AEEYYTHLQRLQAEFDNYRKRTQKEKEDFAKYASERVVEGLLPVLDNFERAVEASKTTQD 133

Query: 118 FEAFNKGVNMIFQQLEGVLKSEGLAAMETVGQPFNPEYHQAIMQXXXXXXXXXXXXXXXQ 177
            ++F++GV MIF+QL+G+L  EGLAA+E VGQPF+P  H+A++Q               Q
Sbjct: 134 MKSFSQGVEMIFKQLQGILAKEGLAAIEAVGQPFDPNLHEAVLQVDSEDYPESTVVEELQ 193

Query: 178 KGYLLKDKVLRPAMVKVS 195
           KGY LK+KV+RP+MVKVS
Sbjct: 194 KGYYLKEKVIRPSMVKVS 211


>B8FUN5.1 B8FUN5_DESHD Protein grpE
          Length = 213

 Score =  158 bits (399), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 73/138 (52%), Positives = 101/138 (73%)

Query: 58  ADEYQGRVLRVQADFDNFRRRTQKEKEELAQYATSKLVGELLPVLDNFERAIATVPATPE 117
           A+EY   + R+QA+FDN+R+RTQKEKE+ A+YA+ ++V  LLPVLDNFERA+     T +
Sbjct: 75  AEEYYTHLQRLQAEFDNYRKRTQKEKEDFAKYASERVVEGLLPVLDNFERAVEASKTTQD 134

Query: 118 FEAFNKGVNMIFQQLEGVLKSEGLAAMETVGQPFNPEYHQAIMQXXXXXXXXXXXXXXXQ 177
            ++F++GV MIF+QL+G+L  EGLAA+E VGQPF+P  H+A++Q               Q
Sbjct: 135 MKSFSQGVEMIFKQLQGILAKEGLAAIEAVGQPFDPNLHEAVLQVDSEDYPESTVVEELQ 194

Query: 178 KGYLLKDKVLRPAMVKVS 195
           KGY LK+KV+RP+MVKVS
Sbjct: 195 KGYYLKEKVIRPSMVKVS 212


>C0ZB47.1 C0ZB47_BREBN GrpE protein
          Length = 196

 Score =  145 bits (366), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/138 (50%), Positives = 96/138 (69%)

Query: 58  ADEYQGRVLRVQADFDNFRRRTQKEKEELAQYATSKLVGELLPVLDNFERAIATVPATPE 117
           A+++Q R+LR  AD DN RRR +KE+E+LA+YA+ K+V ELLPVLDNFERA+A    +  
Sbjct: 58  AEDHQNRMLRAMADMDNLRRRVRKEQEDLAKYASLKIVEELLPVLDNFERALAADKESMT 117

Query: 118 FEAFNKGVNMIFQQLEGVLKSEGLAAMETVGQPFNPEYHQAIMQXXXXXXXXXXXXXXXQ 177
            E+  +GVNM+++Q+  V   EGLAA+E  G+PF+P  HQA+MQ               Q
Sbjct: 118 VESLLEGVNMVYRQMVQVFDKEGLAAIEAQGKPFDPHIHQAVMQTQNPEFESGVVVAELQ 177

Query: 178 KGYLLKDKVLRPAMVKVS 195
           KGY+ KD+V+RPAMV+V+
Sbjct: 178 KGYMFKDRVVRPAMVQVN 195


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.132    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 822,333,804
Number of extensions: 27034585
Number of successful extensions: 75839
Number of sequences better than 1.0e-05: 1782
Number of HSP's gapped: 73901
Number of HSP's successfully gapped: 1782
Length of query: 196
Length of database: 3,060,696,203
Length adjustment: 129
Effective length of query: 67
Effective length of database: 1,845,385,268
Effective search space: 123640812956
Effective search space used: 123640812956
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)