BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0290.0050.p
         (173 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KG02.1 B3KG02_9BACI Putative uncharacterized protein                 74   7e-12

>B3KG02.1 B3KG02_9BACI Putative uncharacterized protein
          Length = 137

 Score = 73.6 bits (179), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 76/170 (44%), Gaps = 37/170 (21%)

Query: 1   MTRFGKNLVMVGLWAGIGILIGMQFXXXXXXXXXXXXXGSPRASTVLPGWSNAAGTSPTA 60
           M+R GK  V + +W GIGIL+GMQ              G+    TV+ G         TA
Sbjct: 2   MSRLGKRFVALIIWTGIGILVGMQLGGAKGPVPAEGTGGT---QTVVQGQVQDP-QGGTA 57

Query: 61  PASQTAGTRTVPPAGGVQSGQAYVYVPVSVDPVTGEYTIXXXXXXXXXXXXXXXSLPQQE 120
             +   GTR  PPA            P SVD     +                 ++P+ E
Sbjct: 58  QGNGWGGTRKHPPA------------PESVDQEPDAHK---------------TAVPEYE 90

Query: 121 VADYSRMSPEQILIPEEQKPTVDKLADKTAGLLQEASQKSIRWVVSLFDS 170
                  SP  IL+PE  +P  D LADKTAGLLQ+ S +SIRWVVS+F S
Sbjct: 91  P------SPSDILLPERSQPPADVLADKTAGLLQQLSDQSIRWVVSMFGS 134


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.313    0.129    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 874,501,167
Number of extensions: 29347229
Number of successful extensions: 87240
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 87240
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 3,060,696,203
Length adjustment: 126
Effective length of query: 47
Effective length of database: 1,873,648,313
Effective search space: 88061470711
Effective search space used: 88061470711
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)