BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0290.0049.p (228 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KG01.1 B3KG01_9BACI Stage II sporulation protein P 281 2e-74 B1DFE4.1 B1DFE4_9BACL Stage II sporulation protein P 246 1e-63 O87702.1 O87702_BACME Putative uncharacterized protein ORF1 183 1e-44 Q65H48.1 Q65H48_BACLD SpoIIP 180 1e-43 C2TQK7.1 C2TQK7_BACCE Stage II sporulation protein P, SpoPII 178 4e-43 >B3KG01.1 B3KG01_9BACI Stage II sporulation protein P Length = 457 Score = 281 bits (720), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 142/226 (62%), Positives = 181/226 (80%), Gaps = 1/226 (0%) Query: 2 KRILIYHSHPREAYNPLLGVESDNPSSAVPSKNVMLVGSYIAKRLEQRGIGTVHAQEDYA 61 K +LIYHSHP+EAYNPLL SDNP + P+KNVMLVGS+++KRLE GIGT+H + DY Sbjct: 213 KSVLIYHSHPQEAYNPLLSHPSDNPGAVSPTKNVMLVGSFLSKRLEANGIGTLHDKSDYQ 272 Query: 62 TTVPDYNWNFSYKYSRMTVKAAMSTHQEMTEMIDIHRDSQRHGKTTAVINGKSYAQVYFI 121 +TV YN+N+SYKYSR AMS + + +IDIHRDSQR+ KTTA +NG +YA+VYFI Sbjct: 273 STVEGYNYNYSYKYSRQMAMEAMSQNDGINYLIDIHRDSQRYNKTTATVNGVNYAKVYFI 332 Query: 122 LGHANKNWKKNEAFANKIHQLLEKSYPGVSRGIWGKSSGNGNNGEYNQTLSPNSVLIEVG 181 +GHAN+NW++NEAFA+KI+ LEKSYPGVSRG+WGKS+ G NGEYNQ+LSPNS+LIE+G Sbjct: 333 IGHANENWRQNEAFASKINAKLEKSYPGVSRGVWGKSADQG-NGEYNQSLSPNSILIEIG 391 Query: 182 GIDNSEDELKRTADILADAIADVYWNSHDAEKAAAPESGADTVKQS 227 GIDN+++EL+RTA+ LAD IA+VYW +AEKA+ + KQS Sbjct: 392 GIDNTKEELQRTAEALADIIAEVYWQEQEAEKASVKKESDPAKKQS 437 >B1DFE4.1 B1DFE4_9BACL Stage II sporulation protein P Length = 418 Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 119/215 (55%), Positives = 160/215 (74%), Gaps = 6/215 (2%) Query: 2 KRILIYHSHPREAYNPLLGVESDNPSSAVPSKNVMLVGSYIAKRLEQRGIGTVHAQEDYA 61 K + IYHSH RE++ P + ++ + +SA SKN+ LVG +A++LE G+GT H+ EDY Sbjct: 208 KVVFIYHSHSRESWYPEIADKNGDANSA--SKNITLVGERLAEKLEDLGVGTTHSDEDYP 265 Query: 62 TTVPDYNWNFSYKYSRMTVKAAMSTHQEMTEMIDIHRDSQRHGKTTAVINGKSYAQVYFI 121 TTVP Y+WN+SYKYS+ TV+ A+++++++ DIHRDS R TT I GKSYAQVYFI Sbjct: 266 TTVPGYDWNYSYKYSKKTVQEAIASNKKLKFFFDIHRDSGRRKTTTVDIKGKSYAQVYFI 325 Query: 122 LGHANKNWKKNEAFANKIHQLLEKSYPGVSRGIWGKSSGNGNNGEYNQTLSPNSVLIEVG 181 +GH N +WKKN FA +IH +LEK YPG+SRGI GK++ G NGEYNQ+L+ +SVLIE+G Sbjct: 326 IGHKNPDWKKNAEFATQIHDVLEKQYPGLSRGILGKTTATG-NGEYNQSLAEDSVLIEIG 384 Query: 182 GIDNSEDELKRTADILADAIADVYWNSHDAEKAAA 216 G+DN+ E RTAD+LA IAD+YW DAEK +A Sbjct: 385 GVDNTLAESYRTADVLAKVIADIYW---DAEKVSA 416 >O87702.1 O87702_BACME Putative uncharacterized protein ORF1 Length = 374 Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 100/220 (45%), Positives = 141/220 (64%), Gaps = 8/220 (3%) Query: 2 KRILIYHSHPREAYNPLLGVESD-NPSSAVPSK-NVMLVGSYIAKRLEQRGIGTVHAQED 59 K IYH+H E+Y PLLG+E D + + AV SK N+ +V + + K LE +GIG Q + Sbjct: 157 KVFYIYHTHSWESYLPLLGLEGDPDANKAVDSKTNINMVANMLGKDLEAQGIGAEVDQTN 216 Query: 60 YATTVPDYNWNF--SYKYSRMTVKAAMSTHQEMTEMIDIHRDSQRHGKTTAVINGKSYAQ 117 + + WN SY SR ++ A++ ++++T ID+HRDS R TT IN KSYA+ Sbjct: 217 IGQKLKEKGWNTNQSYAMSRTVIETALTENRDLTYFIDLHRDSLRKDNTTIKINNKSYAK 276 Query: 118 VYFILGHANKNWKKNEAFANKIHQLLEKSYPGVSRGIWGKSSGNGNNGEYNQTLSPNSVL 177 V F+LG AN+N+++N A +H+ LEK YPG+SRG+ GK+ +G NG YNQ +S N++L Sbjct: 277 VVFVLGKANQNFEQNLKMAKALHEGLEKKYPGLSRGVIGKNKSSG-NGVYNQDVSRNAIL 335 Query: 178 IEVGGIDNSEDELKRTADILADAIADVYWNSHDAEKAAAP 217 IEVGG+DN+ DEL T L+D I+ YW AEK AP Sbjct: 336 IEVGGVDNNFDELTNTTKALSDVISQFYW---QAEKVDAP 372 >Q65H48.1 Q65H48_BACLD SpoIIP Length = 401 Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 98/228 (42%), Positives = 145/228 (63%), Gaps = 9/228 (3%) Query: 2 KRILIYHSHPREAYNPLLGVESDNPSSAVPSK-NVMLVGSYIAKRLEQRGIGTVHAQEDY 60 K + IY++H E+Y P L E+D P A+ SK NV LV +A ++ +G+G + + D+ Sbjct: 179 KVVFIYNTHNTESYLPFLKGEAD-PDRAIHSKANVTLVSDMLANAMKSQGVGAMVDKTDF 237 Query: 61 ATTVPDYNWNF--SYKYSRMTVKAAMSTHQEMTEMIDIHRDSQRHGKTTAVINGKSYAQV 118 + W + SY SR VK AM+ ++++ IDIHRDSQR TTA + GKSYA+V Sbjct: 238 QANLRKKGWAYARSYDESRPVVKEAMAQNKDLQYFIDIHRDSQRKKATTATVKGKSYARV 297 Query: 119 YFILGHANKNWKKNEAFANKIHQLLEKSYPGVSRGIWGKSSGNGNNGEYNQTLSPNSVLI 178 F+LG + N++ N A ++H+ +EK YPG+SRG+ K + G+NG YNQ L+ SVLI Sbjct: 298 AFVLGKKSSNFESNLKLAKELHERMEKKYPGLSRGVISKGAA-GDNGIYNQDLNERSVLI 356 Query: 179 EVGGIDNSEDELKRTADILADAIADVYWNSHDAEKAAAPESGADTVKQ 226 E GG+DN+ +EL+R A+ +AD +++YWN AEK A +SG D K+ Sbjct: 357 EFGGVDNNREELERAAEAMADVFSEMYWN---AEKVDA-DSGEDDKKK 400 >C2TQK7.1 C2TQK7_BACCE Stage II sporulation protein P, SpoPII Length = 374 Score = 178 bits (451), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 92/207 (44%), Positives = 140/207 (67%), Gaps = 5/207 (2%) Query: 2 KRILIYHSHPREAYNPLLGVESDNPSSAVPSK-NVMLVGSYIAKRLEQRGIGTVHAQEDY 60 K + IYHSH RE++ PLL + NP++A K NV L+G + +LE++GIG ++ + D Sbjct: 165 KSVFIYHSHSRESFLPLLP-GTTNPNAASSDKVNVSLLGDRLKIKLEEKGIGAINNKTDI 223 Query: 61 ATTVPDYNWNF--SYKYSRMTVKAAMSTHQEMTEMIDIHRDSQRHGKTTAVINGKSYAQV 118 + + N+ SY SR V+ A++ ++++ ++DIHRDS R TT INGKSY ++ Sbjct: 224 VDMLLNRGLNYPSSYNISREVVQEALAQNKDIQYLVDIHRDSSRKPLTTKTINGKSYGRL 283 Query: 119 YFILGHANKNWKKNEAFANKIHQLLEKSYPGVSRGIWGKSSGNGNNGEYNQTLSPNSVLI 178 YF++G NK+++++ FA I+ L+K+Y G+SRGI+ K G NG YNQ LSP+++L+ Sbjct: 284 YFVVGKENKHFQQSLQFAKAINSYLDKNYYGISRGIFIKDRREG-NGVYNQDLSPHAMLV 342 Query: 179 EVGGIDNSEDELKRTADILADAIADVY 205 E+GG+DN+ DEL RT DILA+AI D Y Sbjct: 343 EIGGVDNNLDELNRTVDILAEAINDYY 369 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.311 0.127 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,419,354,289 Number of extensions: 58049940 Number of successful extensions: 115964 Number of sequences better than 1.0e-05: 301 Number of HSP's gapped: 115207 Number of HSP's successfully gapped: 301 Length of query: 228 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 97 Effective length of database: 1,826,543,238 Effective search space: 177174694086 Effective search space used: 177174694086 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 129 (54.3 bits)