BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0290.0048.p
         (221 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KG01.1 B3KG01_9BACI Stage II sporulation protein P                  143   9e-33
B1DFE4.1 B1DFE4_9BACL Stage II sporulation protein P                   91   7e-17

>B3KG01.1 B3KG01_9BACI Stage II sporulation protein P
          Length = 457

 Score =  143 bits (361), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 65/124 (52%), Positives = 98/124 (79%)

Query: 1   MNRKWFQLWNIGRLRSKLLDVLSLGKTMLLLAGGSLVFFMXXXXXXXXXQKLNSSPVPSM 60
           MN + F++WNI R++ K+++ LS+G+T+++L  GSL+FF+         Q++NSSPV SM
Sbjct: 1   MNNRKFRIWNIARMKRKVMEGLSMGRTLIILMLGSLIFFILLGIGGMAEQRMNSSPVSSM 60

Query: 61  KGLAASLSSGFFMELLGMEVPHLPKSEEPSAFSGRNVTSFVFRMLTSVDPGDPKSLLSRE 120
           KGLAASLSS FF++++GME+PH+  S+E S+FSG  +++FVF +LTSV+P DPKSLL+ E
Sbjct: 61  KGLAASLSSHFFIDMIGMEMPHMTASKETSSFSGEKMSTFVFELLTSVNPKDPKSLLAGE 120

Query: 121 VPGL 124
           +PG+
Sbjct: 121 LPGM 124


>B1DFE4.1 B1DFE4_9BACL Stage II sporulation protein P
          Length = 418

 Score = 90.9 bits (224), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 77/122 (63%)

Query: 3   RKWFQLWNIGRLRSKLLDVLSLGKTMLLLAGGSLVFFMXXXXXXXXXQKLNSSPVPSMKG 62
           ++   L+++ R   ++  +L  G+T  +L+  S++FF+         Q   ++PV SM G
Sbjct: 2   KRTIMLFDLTRGSKRIRRLLVTGRTFAVLSISSMLFFVAIGIAGMAQQHSLAAPVSSMSG 61

Query: 63  LAASLSSGFFMELLGMEVPHLPKSEEPSAFSGRNVTSFVFRMLTSVDPGDPKSLLSREVP 122
            AAS+SSGFF ++L ME+P    ++     SG  ++SF+ R++T+V+PGDP+SL++ E+P
Sbjct: 62  FAASVSSGFFGDMLEMEMPQFKSTKSGEELSGTQISSFIIRLMTNVNPGDPRSLIAGEIP 121

Query: 123 GL 124
           G+
Sbjct: 122 GM 123


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,108,445,709
Number of extensions: 38400794
Number of successful extensions: 74398
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 74404
Number of HSP's successfully gapped: 2
Length of query: 221
Length of database: 3,060,696,203
Length adjustment: 131
Effective length of query: 90
Effective length of database: 1,826,543,238
Effective search space: 164388891420
Effective search space used: 164388891420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)