BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0290.0045.p
         (101 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KFZ9.1 B3KFZ9_9BACI Ribosomal protein S20                           116   7e-25
B1DFE6.1 B1DFE6_9BACL Ribosomal protein S20                           112   2e-23
Q5WHG9.1 RS20_BACSK 30S ribosomal protein S20                          96   9e-19
C5D4V0.1 C5D4V0_9BACI Ribosomal protein S20                            86   2e-15
A0RIU0.1 A0RIU0_BACAH SSU ribosomal protein S20P                       84   3e-15

>B3KFZ9.1 B3KFZ9_9BACI Ribosomal protein S20
          Length = 90

 Score =  116 bits (290), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 57/68 (83%), Positives = 62/68 (91%)

Query: 12 MPNIKSAVKRVKTTEKRRALNASQKSALRTAVKTADVALTGTEVETAQAAFQAASKKLDK 71
          MPNIKSA+KRVKT +KR ALN SQKSALRTAVKTADVAL GTE+E A+ AFQAASKKLDK
Sbjct: 1  MPNIKSAIKRVKTNDKRHALNISQKSALRTAVKTADVALNGTEIEAAKVAFQAASKKLDK 60

Query: 72 AVTKGLVH 79
          AVTKGL+H
Sbjct: 61 AVTKGLIH 68


>B1DFE6.1 B1DFE6_9BACL Ribosomal protein S20
          Length = 90

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/68 (80%), Positives = 63/68 (92%)

Query: 12 MPNIKSAVKRVKTTEKRRALNASQKSALRTAVKTADVALTGTEVETAQAAFQAASKKLDK 71
          MPNIKSA+KRVKT+EKRRALNASQKSALRTAVK+AD A+ GT+VE A+AA  AA+KKLDK
Sbjct: 1  MPNIKSAIKRVKTSEKRRALNASQKSALRTAVKSADQAIAGTDVEVAKAALVAATKKLDK 60

Query: 72 AVTKGLVH 79
          AVTKGL+H
Sbjct: 61 AVTKGLIH 68


>Q5WHG9.1 RS20_BACSK 30S ribosomal protein S20
          Length = 88

 Score = 95.9 bits (237), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 50/68 (73%), Positives = 55/68 (80%)

Query: 12 MPNIKSAVKRVKTTEKRRALNASQKSALRTAVKTADVALTGTEVETAQAAFQAASKKLDK 71
          MPNIKSA+KRVKT EKRRA NA+QKSALRTAVK  + A    +VE AQAAF  ASKKLDK
Sbjct: 1  MPNIKSAIKRVKTNEKRRAQNAAQKSALRTAVKHFETAAANGDVEKAQAAFVEASKKLDK 60

Query: 72 AVTKGLVH 79
          A TKGL+H
Sbjct: 61 AATKGLIH 68


>C5D4V0.1 C5D4V0_9BACI Ribosomal protein S20
          Length = 89

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/68 (64%), Positives = 53/68 (77%)

Query: 12 MPNIKSAVKRVKTTEKRRALNASQKSALRTAVKTADVALTGTEVETAQAAFQAASKKLDK 71
          M NIKSA+KR KT+EKRRA NAS +SA+RTA+K  +  +   +VE AQ AF  ASKKLDK
Sbjct: 1  MANIKSAIKRAKTSEKRRAHNASMRSAMRTAIKKFEAFVELKDVEKAQEAFIIASKKLDK 60

Query: 72 AVTKGLVH 79
          AVTKGL+H
Sbjct: 61 AVTKGLIH 68


>A0RIU0.1 A0RIU0_BACAH SSU ribosomal protein S20P
          Length = 100

 Score = 84.3 bits (207), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/73 (57%), Positives = 56/73 (76%)

Query: 7  QEVNAMPNIKSAVKRVKTTEKRRALNASQKSALRTAVKTADVALTGTEVETAQAAFQAAS 66
          +EV +M NIKSA+KR K +E+RRA NAS KS +R+AVKT +  +T  ++E A+ AF+ AS
Sbjct: 11 REVKSMANIKSAIKRAKLSEERRAHNASIKSDMRSAVKTVEALVTNNDLENAKEAFKTAS 70

Query: 67 KKLDKAVTKGLVH 79
          KKLDKA  KGL+H
Sbjct: 71 KKLDKAARKGLIH 83


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.309    0.117    0.288 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 271,868,463
Number of extensions: 5871463
Number of successful extensions: 31028
Number of sequences better than 1.0e-05: 574
Number of HSP's gapped: 30994
Number of HSP's successfully gapped: 574
Length of query: 101
Length of database: 3,060,696,203
Length adjustment: 69
Effective length of query: 32
Effective length of database: 2,410,646,168
Effective search space: 77140677376
Effective search space used: 77140677376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 126 (53.1 bits)