BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0290.0042.p
         (415 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KFZ7.1 B3KFZ7_9BACI Putative uncharacterized protein                137   2e-30
B1DFE8.1 B1DFE8_9BACL Putative uncharacterized protein                 82   7e-14
C0ZB19.1 C0ZB19_BREBN Putative uncharacterized protein                 64   3e-08

>B3KFZ7.1 B3KFZ7_9BACI Putative uncharacterized protein
          Length = 422

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 122/421 (28%), Positives = 183/421 (43%), Gaps = 55/421 (13%)

Query: 1   MKCAEVMEWMHRYLDHDLSQEEIIEMFRHIDNCPSCADVYDRLSTLSRQLEQLPDVKPPF 60
           M C EV+E MHRYLD DL+ +E  +M++HI  CP CA+ ++ L +L+R+LE LP V PP 
Sbjct: 1   MNCQEVVERMHRYLDRDLTSDETAQMYQHIAVCPECAETFNILKSLNRELEDLPAVTPPV 60

Query: 61  SLVDSIMPRLDELDRG----VQEPVMTGTDESNVVP-LSRKSSHGKIPKGSSMXXXXXXX 115
           SLVD+IMP+LD +DR     V  P +   + + ++P + R    G     S++       
Sbjct: 61  SLVDAIMPKLDAIDRDRESLVAPPAVKSQEPAEMMPDIRRPRRAGSW--WSTVGGRTAIG 118

Query: 116 XXXXXXXXXXXXFNMPEKMPAADVEQALNQSADTGSSLQKSIGSTEPSQEAGQEGNADGA 175
                       FN   KM  +D E    +++ T +   +    TE  Q+  Q   ADG 
Sbjct: 119 AAAAVLILGVAIFNYEPKM-LSDAEIPYEEASTTSAGANEDSAETE-IQDMVQPFAADGG 176

Query: 176 TGSAGQEGPAQDNMFSAG---------------GSGDNT------SGGTEDLTAPSTAPS 214
             + G      D   SAG               GS D +      S G +D+   + AP 
Sbjct: 177 AETGGTANEGSDP--SAGLRSSPPESSESDPNPGSNDESKEKTEPSDGAKDIREDAAAP- 233

Query: 215 QDAPAVA-----PETTKKP-----DALKRQTQKPDKXXXXXXXXXXXQNSVISSPDANGD 264
            DAP        P+   +P     +  K+    P               S+ +SP+   D
Sbjct: 234 -DAPVQKNNDGEPQAPDQPATSSNEVPKKNDASPSNPPADEPGQNSESMSIQTSPNEAMD 292

Query: 265 TSAQDSAPMEGKMRAGDSNSG--KDIQPSPSEFGIMNMMPAMVAASPATSPDGRFDAELA 322
              +   P+     AGD+ +G  +    S   +  + M+P         SPDG + A L 
Sbjct: 293 VQTEKVPPISDP--AGDAGAGSTESSDRSTGSYQGLAMVPEQW-----PSPDGLYRASLE 345

Query: 323 GQQLVIYSIPEG--ASRDDRKALTSLPLEGEWVSGEWSEDSREFTYVTTQNGSEIRKTYT 380
            + LVIY +P G   S +  + +  +PL G WVSG+WSED   F Y    N   +   Y+
Sbjct: 346 AEYLVIYRLPSGDQTSAEAVETVERIPLGGSWVSGQWSEDGLTFKYKVQTNKELVESVYS 405

Query: 381 V 381
           +
Sbjct: 406 I 406


>B1DFE8.1 B1DFE8_9BACL Putative uncharacterized protein
          Length = 354

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 50/73 (68%)

Query: 1  MKCAEVMEWMHRYLDHDLSQEEIIEMFRHIDNCPSCADVYDRLSTLSRQLEQLPDVKPPF 60
          M C EV+E+M+R LD DL + E   +  H  +CP CA +++RL  LS +L  LP V P +
Sbjct: 1  MTCQEVIEYMNRQLDGDLDEHEYEILMNHTRHCPDCAAMFERLKQLSDELGNLPHVMPKY 60

Query: 61 SLVDSIMPRLDEL 73
          SLVD+I+P+L+E+
Sbjct: 61 SLVDAILPQLEEI 73


>C0ZB19.1 C0ZB19_BREBN Putative uncharacterized protein
          Length = 285

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 58/112 (51%), Gaps = 10/112 (8%)

Query: 1   MKCAEVMEWMHRYLDHDLSQEEIIEMFRHIDNCPSCADVYDRLSTLSRQLEQLPDVKPPF 60
           M   E+ E M R LD DLS+ E   + R I        +Y+RL  +S+QLE LP V PP 
Sbjct: 1   MTNEEIFELMQRDLDGDLSESEQQLLHRLIQKDTDLQLMYNRLKDVSQQLEHLPPVVPPI 60

Query: 61  SLVDSIMPRLDE-------LDRGVQE---PVMTGTDESNVVPLSRKSSHGKI 102
           S+VDSI+P+L+        +   V E   P +    ES+ +P S+K    K+
Sbjct: 61  SIVDSILPKLESAAAKPAAVKSMVNEEILPTLEVKRESSSLPESKKWKRMKV 112


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.307    0.125    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 2,287,425,837
Number of extensions: 96203796
Number of successful extensions: 352665
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 352770
Number of HSP's successfully gapped: 3
Length of query: 415
Length of database: 3,060,696,203
Length adjustment: 138
Effective length of query: 277
Effective length of database: 1,760,596,133
Effective search space: 487685128841
Effective search space used: 487685128841
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 132 (55.5 bits)