BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0290.0039.p (317 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q65E71.1 Q65E71_BACLD KdgK 393 e-107 P50845.1 KDGK_BACSU 2-dehydro-3-deoxygluconokinase EC=2.7.1.45 380 e-103 A8FI30.1 A8FI30_BACP2 2-dehydro-3-deoxygluconokinase EC=2.7.1.45 375 e-102 B4AGZ2.1 B4AGZ2_BACPU 2-dehydro-3-deoxygluconokinase (2-keto-3-d... 370 e-101 A4INF2.1 A4INF2_GEOTN 2-keto-3-deoxygluconate kinase-like protein 351 4e-95 >Q65E71.1 Q65E71_BACLD KdgK Length = 321 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 188/309 (60%), Positives = 240/309 (77%), Gaps = 1/309 (0%) Query: 5 LDAVTFGEPMAMFYANEAGPLHEVTSFSKALAGAESNVATGLSRLGHKTGYVTKLGEDNF 64 LD +TFGE MAMFYANEAG LHE +SFSKALAGAE+NVA GLSRLG + G+++K+G D+ Sbjct: 3 LDVMTFGESMAMFYANEAGGLHEASSFSKALAGAETNVAVGLSRLGFRVGWMSKVGADSL 62 Query: 65 GQFIASALNKEQINTDSITYTKEFPTGMLIKSKVLTGDPKVEYFRKNSAASKLSLSDFDE 124 G FI + L KE ++ + T + TG+L+KSKV +GDP V Y+R SAAS +S+ D+ Sbjct: 63 GTFILNELKKEGVDISEVKRTADRQTGILLKSKVESGDPDVTYYRSGSAASTMSIDDYPA 122 Query: 125 SYFASAGHLHVTSISAALSKTCHEFSLHAMEFMKKNGKTVSLDPNLRPVLWPDTETMVNT 184 YF A H+HVT I ALS+ F+ HA+ MKK+GKT+S DPNLR LWPD +TMV+T Sbjct: 123 EYFKQAKHMHVTGIPPALSREMRGFARHAVHQMKKDGKTISFDPNLRFQLWPDQQTMVHT 182 Query: 185 INDLAARCDWFLPGHSEGKTLTGLDTPEEIAGYYLERGVSLVVIKLGPEGAYYKTSSGEE 244 IN++AA+ DWFLPG +EGK LTG ++PE+IA +Y+ +GV ++VIKLG EGAYY+TS +E Sbjct: 183 INEIAAQADWFLPGINEGKLLTGCNSPEDIAKHYVMQGVKVIVIKLGKEGAYYRTSE-KE 241 Query: 245 GYVSGFKVETVVDTVGAGDGFAVGVISAMLEKLTVAEAVKRGNAIGALAVMSPGDMDGLP 304 GYV G++VE VVDTVGAGDGFAVG+IS +L+ L + EAV+R NAIGALAVM+PGDMDGLP Sbjct: 242 GYVPGYQVEKVVDTVGAGDGFAVGMISGLLDGLPLEEAVQRANAIGALAVMAPGDMDGLP 301 Query: 305 DRDSLEKFM 313 RD L+ FM Sbjct: 302 SRDQLKAFM 310 >P50845.1 KDGK_BACSU 2-dehydro-3-deoxygluconokinase EC=2.7.1.45 Length = 324 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 185/311 (59%), Positives = 231/311 (74%), Gaps = 2/311 (0%) Query: 4 QLDAVTFGEPMAMFYANEAGPLHEVTSFSKALAGAESNVATGLSRLGHKTGYVTKLGEDN 63 +LDAVTFGE MAMFYANE G LHEV++FSK LAGAESNVA GL+RLG + G+++K+G D Sbjct: 2 KLDAVTFGESMAMFYANEYGGLHEVSTFSKGLAGAESNVACGLARLGFRMGWMSKVGNDQ 61 Query: 64 FGQFIASALNKEQINTDSITYTK-EFPTGMLIKSKVLTGDPKVEYFRKNSAASKLSLSDF 122 G FI L KE ++ + ++ E PTG+L+KSKV GDP+V Y+RKNSAAS L+ +++ Sbjct: 62 LGTFILQELKKEGVDVSRVIRSQDENPTGLLLKSKVKEGDPQVTYYRKNSAASTLTTAEY 121 Query: 123 DESYFASAGHLHVTSISAALSKTCHEFSLHAMEFMKKNGKTVSLDPNLRPVLWPDTETMV 182 YF AGHLHVT I ALS +F+ H M M+ GKT+S DPN+RP LWPD TMV Sbjct: 122 PRDYFQCAGHLHVTGIPPALSAEMKDFTYHVMNDMRNAGKTISFDPNVRPSLWPDQATMV 181 Query: 183 NTINDLAARCDWFLPGHSEGKTLTGLDTPEEIAGYYLERGVSLVVIKLGPEGAYYKTSSG 242 +TINDLA DWF PG +EG+ LTG TPE IA YYL++G S V IKLG EGAY+KT + Sbjct: 182 HTINDLAGLADWFFPGIAEGELLTGEKTPEGIADYYLKKGASFVAIKLGKEGAYFKTGT- 240 Query: 243 EEGYVSGFKVETVVDTVGAGDGFAVGVISAMLEKLTVAEAVKRGNAIGALAVMSPGDMDG 302 EG++ G +V+ VVDTVGAGDGFAVGVIS +L+ L+ +AV+RGNAIGAL V +PGDMDG Sbjct: 241 SEGFLEGCRVDRVVDTVGAGDGFAVGVISGILDGLSYKDAVQRGNAIGALQVQAPGDMDG 300 Query: 303 LPDRDSLEKFM 313 LP R+ L F+ Sbjct: 301 LPTREKLASFL 311 >A8FI30.1 A8FI30_BACP2 2-dehydro-3-deoxygluconokinase EC=2.7.1.45 Length = 338 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 186/315 (59%), Positives = 233/315 (73%), Gaps = 2/315 (0%) Query: 3 KQLDAVTFGEPMAMFYANEAGPLHEVTSFSKALAGAESNVATGLSRLGHKTGYVTKLGED 62 K LDAVTFGE MAMFYA EAG LH+V +F KALAGAESNVA GL+RLG G+++K+G D Sbjct: 2 KALDAVTFGESMAMFYAKEAGELHQVHTFQKALAGAESNVAVGLARLGFDVGWMSKVGAD 61 Query: 63 NFGQFIASALNKEQINTDSITYTKE-FPTGMLIKSKVLTGDPKVEYFRKNSAASKLSLSD 121 + G FI L KE ++T ++ + + TG+L+KSKV+ GDP V Y+RK SAAS +S SD Sbjct: 62 SLGTFILEELQKEGVDTSAVIRSNDGAKTGILLKSKVMDGDPDVTYYRKGSAASTMSPSD 121 Query: 122 FDESYFASAGHLHVTSISAALSKTCHEFSLHAMEFMKKNGKTVSLDPNLRPVLWPDTETM 181 F YF AGHLH+T I ALS FS HA++ MK+ GKT+S DPNLR LW + E M Sbjct: 122 FPADYFQQAGHLHMTGIPPALSSEMRAFSFHALQKMKEAGKTISFDPNLRLQLWEEEEDM 181 Query: 182 VNTINDLAARCDWFLPGHSEGKTLTGLDTPEEIAGYYLERGVSLVVIKLGPEGAYYKTSS 241 ++T+N +A + DWF PG +EG+ LTG PEEIA YL++GV LVVIKLG EGAYYK S+ Sbjct: 182 IHTVNQIAYQVDWFFPGLAEGQRLTGCHEPEEIADVYLQKGVKLVVIKLGAEGAYYK-SA 240 Query: 242 GEEGYVSGFKVETVVDTVGAGDGFAVGVISAMLEKLTVAEAVKRGNAIGALAVMSPGDMD 301 +G VSGF V VVDTVGAGDGFAVGVIS +L+ L+ ++V+RGNA+GALAVMSPGD D Sbjct: 241 ANQGMVSGFYVPNVVDTVGAGDGFAVGVISGLLDGLSCEKSVRRGNAVGALAVMSPGDKD 300 Query: 302 GLPDRDSLEKFMKTS 316 GLP R+ L+ F+K + Sbjct: 301 GLPTREELQSFIKEA 315 >B4AGZ2.1 B4AGZ2_BACPU 2-dehydro-3-deoxygluconokinase (2-keto-3-deoxygluconokinase) (3-deoxy-2-oxo-D-gluconate kinase) (KDG kinase) EC=2.7.1.45 Length = 338 Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust. Identities = 184/313 (58%), Positives = 231/313 (73%), Gaps = 2/313 (0%) Query: 3 KQLDAVTFGEPMAMFYANEAGPLHEVTSFSKALAGAESNVATGLSRLGHKTGYVTKLGED 62 K LDAVTFGE MAMFYA EAG LH+V +F KALAGAESNVA GL+RLG G+++K+G D Sbjct: 2 KALDAVTFGESMAMFYAKEAGELHQVHTFQKALAGAESNVAVGLARLGFDVGWMSKVGAD 61 Query: 63 NFGQFIASALNKEQINTDSITYTKE-FPTGMLIKSKVLTGDPKVEYFRKNSAASKLSLSD 121 + G FI L KE ++T ++ + + TG+L+KSKV+ GDP V Y+RK SAAS +S SD Sbjct: 62 SLGTFILEELQKEGVDTSAVIRSNDGSQTGILLKSKVMDGDPDVTYYRKGSAASTMSPSD 121 Query: 122 FDESYFASAGHLHVTSISAALSKTCHEFSLHAMEFMKKNGKTVSLDPNLRPVLWPDTETM 181 F +YF AGHLH+T I ALS FS HA++ MK+ GKT+S DPNLR LW + E M Sbjct: 122 FPANYFKQAGHLHMTGIPPALSNEMRAFSFHALQKMKEAGKTISFDPNLRLQLWEEEEDM 181 Query: 182 VNTINDLAARCDWFLPGHSEGKTLTGLDTPEEIAGYYLERGVSLVVIKLGPEGAYYKTSS 241 ++T+N +A + DWF PG +EG+ LTG PEEIA YL++GV LVVIKLG EGA+YK S+ Sbjct: 182 IHTVNQIAFQVDWFFPGLAEGQRLTGCHEPEEIADVYLQKGVKLVVIKLGAEGAFYK-SA 240 Query: 242 GEEGYVSGFKVETVVDTVGAGDGFAVGVISAMLEKLTVAEAVKRGNAIGALAVMSPGDMD 301 +G VSGF V VVDTVGAGDGFAVGVIS +L+ L+ ++V R NA+GALAVMSPGD D Sbjct: 241 ASQGIVSGFYVPNVVDTVGAGDGFAVGVISGLLDGLSYEKSVTRANAVGALAVMSPGDKD 300 Query: 302 GLPDRDSLEKFMK 314 GLP ++ L+ FMK Sbjct: 301 GLPTQEELQAFMK 313 >A4INF2.1 A4INF2_GEOTN 2-keto-3-deoxygluconate kinase-like protein Length = 316 Score = 351 bits (901), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 172/309 (55%), Positives = 215/309 (69%), Gaps = 1/309 (0%) Query: 5 LDAVTFGEPMAMFYANEAGPLHEVTSFSKALAGAESNVATGLSRLGHKTGYVTKLGEDNF 64 +D VTFGE M MF A E G LH V F KALAGAE N A G +RLG K+G+V+K+G D F Sbjct: 1 MDVVTFGEAMVMFIATEIGSLHRVRCFHKALAGAEVNTAIGFARLGLKSGWVSKVGNDAF 60 Query: 65 GQFIASALNKEQINTDSITYTKEFPTGMLIKSKVLTGDPKVEYFRKNSAASKLSLSDFDE 124 G +I L E ++ + + E PTG +KSK+ GDP+V+YFRK SAAS + + DF+E Sbjct: 61 GAYIIEQLRSEGVDIEQVAIDPEHPTGFQLKSKMSEGDPEVQYFRKGSAASYMHIGDFNE 120 Query: 125 SYFASAGHLHVTSISAALSKTCHEFSLHAMEFMKKNGKTVSLDPNLRPVLWPDTETMVNT 184 +YF +A HLH+T I A+S + EF+ H FM+K GKT+S DPNLRP LW E M+ Sbjct: 121 AYFRTARHLHMTGIPLAISDSMREFAKHVQSFMRKEGKTISFDPNLRPSLWKSREEMIRV 180 Query: 185 INDLAARCDWFLPGHSEGKTLTGLDTPEEIAGYYLERGVSLVVIKLGPEGAYYKTSSGEE 244 IN++A D FLPG EG+ LTG P +IA +YLE+GV LVV+KLG +GA+YK ++ +E Sbjct: 181 INEVALESDCFLPGVHEGELLTGCADPRDIADFYLEKGVRLVVVKLGDKGAFYKCAN-DE 239 Query: 245 GYVSGFKVETVVDTVGAGDGFAVGVISAMLEKLTVAEAVKRGNAIGALAVMSPGDMDGLP 304 GYV F V VVDTVGAGDGFAVGVIS +LE L + EAV RGNAIGALAV S GD DG P Sbjct: 240 GYVPSFSVLKVVDTVGAGDGFAVGVISGLLEGLPIREAVLRGNAIGALAVQSEGDSDGYP 299 Query: 305 DRDSLEKFM 313 R LE+F+ Sbjct: 300 TRQQLEQFI 308 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.131 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,828,706,700 Number of extensions: 74097225 Number of successful extensions: 162153 Number of sequences better than 1.0e-05: 3149 Number of HSP's gapped: 158282 Number of HSP's successfully gapped: 3150 Length of query: 317 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 182 Effective length of database: 1,788,859,178 Effective search space: 325572370396 Effective search space used: 325572370396 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 131 (55.1 bits)