BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0290.0029.p (183 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6LZI9.1 A6LZI9_CLOB8 Transcriptional regulator, TetR family 219 7e-56 C3FCY6.1 C3FCY6_BACTU Transcriptional regulator, TetR 182 9e-45 B1HYH9.1 B1HYH9_LYSSC Transcriptional regulator, TetR family 176 9e-43 C0Z945.1 C0Z945_BREBN Probable transcriptional regulator 169 8e-41 Q3MA83.1 Q3MA83_ANAVT Transcriptional regulator, TetR family 158 2e-37 >A6LZI9.1 A6LZI9_CLOB8 Transcriptional regulator, TetR family Length = 199 Score = 219 bits (559), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 103/176 (58%), Positives = 128/176 (72%) Query: 1 MKKGDRTREYIIMKSAELFNQRGYAGSSLNDXXXXXXXXXXXXYRHFGSKDEIALEAYNY 60 M KG+ TR+YII KSAELFNQRGYAGSSL+D YRHF KDEIALEAY+Y Sbjct: 1 MTKGENTRKYIIKKSAELFNQRGYAGSSLSDITEVTGIKRGGIYRHFACKDEIALEAYDY 60 Query: 61 AANVVNGRFSEAIDKEESAAGRLLAFFHVYEDVVNTPPFIGGCPLQNTATESDDTHPSLR 120 A +VN +F+EA+D ++SA ++LA F VYE V PPFIGGCPL NTA ESDDTHP LR Sbjct: 61 AVGIVNEKFTEAVDNQQSAIDKILAIFRVYEQVTEHPPFIGGCPLLNTAIESDDTHPELR 120 Query: 121 DKAQRGMHNTLDMMKQIIYEGIRTGEFKEDVDPDTLASFALSLLEGGILLSKLEGS 176 KAQ+ + L +K+I+Y+GI+ E + ++D D LA+F S LEGGI+LSKLEG+ Sbjct: 121 KKAQKSLERMLQYIKEILYQGIQNCELRSNLDIDALATFIFSALEGGIMLSKLEGN 176 >C3FCY6.1 C3FCY6_BACTU Transcriptional regulator, TetR Length = 200 Score = 182 bits (463), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 90/174 (51%), Positives = 119/174 (68%) Query: 1 MKKGDRTREYIIMKSAELFNQRGYAGSSLNDXXXXXXXXXXXXYRHFGSKDEIALEAYNY 60 M+KG++TR I++KSAELFNQ+GYAG S+ND YR+F SKDEIALEA+ Y Sbjct: 5 MQKGEQTRRNIVLKSAELFNQKGYAGCSMNDIMEATGLKKGGIYRNFKSKDEIALEAFEY 64 Query: 61 AANVVNGRFSEAIDKEESAAGRLLAFFHVYEDVVNTPPFIGGCPLQNTATESDDTHPSLR 120 A + V+ FSEAI + ++ AFF+VYEDV+N PP GGCPL NTA +SDDT+ LR Sbjct: 65 AIDTVSQHFSEAISNANTTLEKVGAFFNVYEDVINNPPIKGGCPLLNTAVDSDDTNLLLR 124 Query: 121 DKAQRGMHNTLDMMKQIIYEGIRTGEFKEDVDPDTLASFALSLLEGGILLSKLE 174 +KA + L+M++ II EGI+ E K D+D +ASF ++ LEG I+ SKLE Sbjct: 125 EKALEVFYTFLNMIEGIIVEGIQNKELKPDIDTKAVASFIIATLEGSIMASKLE 178 >B1HYH9.1 B1HYH9_LYSSC Transcriptional regulator, TetR family Length = 200 Score = 176 bits (446), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 86/174 (49%), Positives = 121/174 (69%) Query: 1 MKKGDRTREYIIMKSAELFNQRGYAGSSLNDXXXXXXXXXXXXYRHFGSKDEIALEAYNY 60 M+KG++TR +I++KSAELFNQ+GYAG S+ND YR+F SKDEIA+EA+ Y Sbjct: 5 MQKGEQTRRHIVLKSAELFNQKGYAGCSINDIMEATGLQKGGIYRNFKSKDEIAIEAFEY 64 Query: 61 AANVVNGRFSEAIDKEESAAGRLLAFFHVYEDVVNTPPFIGGCPLQNTATESDDTHPSLR 120 A + V+ FSEAI + ++ AFF+VYEDV+N PP GGCPL NTA +SDDT+ LR Sbjct: 65 AIDTVSQHFSEAIRNANTTLEKVGAFFNVYEDVINNPPIKGGCPLLNTAVDSDDTNLLLR 124 Query: 121 DKAQRGMHNTLDMMKQIIYEGIRTGEFKEDVDPDTLASFALSLLEGGILLSKLE 174 +KA + L++++ I+ EGI+ E K D++ + +ASF ++ LEG I+ SKLE Sbjct: 125 EKALGVFYTFLNIIEGILEEGIQNEELKPDINTEEVASFIVATLEGSIMASKLE 178 >C0Z945.1 C0Z945_BREBN Probable transcriptional regulator Length = 196 Score = 169 bits (429), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 80/173 (46%), Positives = 110/173 (63%) Query: 1 MKKGDRTREYIIMKSAELFNQRGYAGSSLNDXXXXXXXXXXXXYRHFGSKDEIALEAYNY 60 M+KG++T+ YII KSAELFNQ GY G+S+ D YR F SKDEIA+EA+ Y Sbjct: 1 MRKGEKTKLYIIQKSAELFNQYGYTGTSMQDIMDATGLTKGALYRAFASKDEIAIEAFKY 60 Query: 61 AANVVNGRFSEAIDKEESAAGRLLAFFHVYEDVVNTPPFIGGCPLQNTATESDDTHPSLR 120 A V+N F+ ++K+++A +L+A VY D VN PP GGCPL NTA ESD + P LR Sbjct: 61 AGEVLNEHFAAVLEKQDTATAKLVAMAKVYSDAVNNPPLQGGCPLLNTAIESDHSFPVLR 120 Query: 121 DKAQRGMHNTLDMMKQIIYEGIRTGEFKEDVDPDTLASFALSLLEGGILLSKL 173 D A T+ M+ ++ EGI GEF+ ++D + +AS S +EG I+ S+L Sbjct: 121 DYAVAAYQETISFMQGLLEEGISQGEFRSEMDAEAVASVIFSSIEGAIMASRL 173 >Q3MA83.1 Q3MA83_ANAVT Transcriptional regulator, TetR family Length = 201 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 72/173 (41%), Positives = 111/173 (64%) Query: 1 MKKGDRTREYIIMKSAELFNQRGYAGSSLNDXXXXXXXXXXXXYRHFGSKDEIALEAYNY 60 M KG+ T+ I+ ++AELFNQ+GYAGSS++D Y HF SKDE+AL+A++Y Sbjct: 1 MSKGEETKTRILQQAAELFNQQGYAGSSISDIMRVTGLQKGGIYNHFHSKDELALQAFDY 60 Query: 61 AANVVNGRFSEAIDKEESAAGRLLAFFHVYEDVVNTPPFIGGCPLQNTATESDDTHPSLR 120 A ++ + A+ + A R+ A V+ PP GGCPL NTA ESDDTHP+LR Sbjct: 61 AIASISKHYRMALRSKRHAIERVQALIQVFSSFAENPPITGGCPLLNTAVESDDTHPALR 120 Query: 121 DKAQRGMHNTLDMMKQIIYEGIRTGEFKEDVDPDTLASFALSLLEGGILLSKL 173 ++ Q+ M++ L+M+++II GI GE + V+ + +A+ ++ LEG I++S+L Sbjct: 121 ERTQQAMNSWLNMIRRIIQTGIERGEIQPHVNTEEIATIIVATLEGAIMMSQL 173 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 947,312,689 Number of extensions: 33488578 Number of successful extensions: 84397 Number of sequences better than 1.0e-05: 289 Number of HSP's gapped: 85010 Number of HSP's successfully gapped: 289 Length of query: 183 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 56 Effective length of database: 1,864,227,298 Effective search space: 104396728688 Effective search space used: 104396728688 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 127 (53.5 bits)