BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0290.0028.p (871 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KFZ5.1 B3KFZ5_9BACI DNA internalization-related competence pro... 742 0.0 B1DFF0.1 B1DFF0_9BACL DNA internalization-related competence pro... 540 e-151 A0AIT1.1 A0AIT1_LISW6 Complete genome 178 3e-42 C0ZB17.1 C0ZB17_BREBN Conserved hypothetical membrane protein 177 3e-42 Q71ZI8.1 Q71ZI8_LISMF ComEC/Rec2 family protein 176 7e-42 >B3KFZ5.1 B3KFZ5_9BACI DNA internalization-related competence protein ComEC/Rec2 Length = 924 Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/906 (45%), Positives = 547/906 (60%), Gaps = 57/906 (6%) Query: 1 VCWVIGSAAGCLFSGYKLLIYTAG-CLLLLAICAVSGRSGWKISVMLGLSLVAATLYWEW 59 V WVIGS A CL+ G+KL + G LLLLA+C G +G ++ + SL + YWEW Sbjct: 32 VLWVIGSGAACLYDGWKLAVIAVGLILLLLAVCQWVG-AGRLFTICMLCSLCVSGSYWEW 90 Query: 60 NEGRNVSLLP--LAFGQSTAELNESYVTAEGQIVSPVERDGDRVDFTVKLSRMGLDRKKV 117 ++ NVS LA +ST + VTA G I SPVE DGDR DF V L R L + K Sbjct: 91 HDEANVSDFESVLASEESTEPIP---VTAFGVISSPVEVDGDRADFQVTLQRADLIQSKH 147 Query: 118 EG----------------ELIAVQITLQAESEIAVAAGWKRGDRVAVQGELKQPGEARNF 161 +++ VQ+ L ++E+ + W+RGDR+ + GE+++PG ARNF Sbjct: 148 PAVQKQADPNGSMMLNTDDIVMVQVKLLDKTELEIVNQWQRGDRIQLSGEMQRPGVARNF 207 Query: 162 GGFDYRAYLLTQRIHWLLKGEGTASVQAVPPDSWGLSSILRWNDDVRAALGAGMDRLFRE 221 GGFDY YL TQ+IHW++K +G+ PPDSW LS +LRWND +R LG+ +D+L+ Sbjct: 208 GGFDYLQYLRTQKIHWIVKVKGSDQAVIEPPDSWKLSHVLRWNDALRDKLGSKLDQLYGG 267 Query: 222 PHAGYMKGLVLGLQDDLDEETFKQFSQLGLTHILAISGMHVAVVVGVILFILRRLHFTRE 281 HAGYMKGLV+G QDDLD +TF +FS+LGLTHILAISGMHVAVVVG +LF+ L TRE Sbjct: 268 IHAGYMKGLVIGNQDDLDPDTFMEFSRLGLTHILAISGMHVAVVVGCLLFVCTTLRMTRE 327 Query: 282 TALTVTIVLIPIYVLLSGAGPSIVRAGIMSMIALLAARFGILKDGMNIXXXXXXXXXVWN 341 +LT + LIP+YVLL+GA PSIVRAGIM MI L AAR +LKDG++I VWN Sbjct: 328 ASLTAVMWLIPVYVLLTGASPSIVRAGIMGMIGLYAARRRLLKDGLHILSVAALAMLVWN 387 Query: 342 PYXXXXXXXXXXXXXTAGLMVYVPLVNPLLCRLPRWLSSTVSVTLVAQLVSFPLTVYYFN 401 PY TAGLM++VP + PLL LPRWL TV +T+VAQL+SFPLT++YFN Sbjct: 388 PYFLVNVSFQLSFIVTAGLMIFVPKLMPLLAFLPRWLGGTVGITVVAQLISFPLTIHYFN 447 Query: 402 QXXXXXXXXXXXXVPFITFXXXXXXXXXXXXXRFWQAGAGVLAHAAELMNDATFSAVGWM 461 Q VP I+ W GAG LA E +N TF V WM Sbjct: 448 QVSLISVFANLILVPVISLVVLPLGMVSLLMGWVWMRGAGWLAAVTEWLNHITFRIVEWM 507 Query: 462 NGFSGGVLIWSSPSLLWICSYYGLLYGILYAMKRRAEARLAPQVMEDETKPLTKLDQPQD 521 NG S + +W SPSL WI Y+ +LY +L + +R + Q ++T+PL + Sbjct: 508 NGSSVFMTLWPSPSLAWILCYFVVLYALLSILNKRFKNPEGGQNASNDTEPLDG----RP 563 Query: 522 SRGRRVRDAGIWSGAGGNLQPTPFQMPESMRWS--------------GPSXXXXXXXXXX 567 S G R +G+ G L P ++ ++RW G + Sbjct: 564 SWGGRADLSGV-----GTL-PIVGRLAGALRWRGFLRASHHIERYAPGAAIALLSGVLIV 617 Query: 568 XXYRGYHSEQLGGAGAISYLDVGQGDSILITTPGGAHILVDGGGTVSFGK-KEAWRVRRS 626 Y GY S GAG + +LDVGQGDSIL+TTP G H+L+DGGGTV+F K K+AW+ R++ Sbjct: 618 LLYSGYQSPSTQGAGLVQFLDVGQGDSILVTTPSGKHVLIDGGGTVNFRKEKDAWKERKA 677 Query: 627 PFEVGAKTLLPLLKQRGIHRLDAIILTHGDQDHAGGLQAVLEGMPVSALLFNGTLAKGDS 686 P+EVGAK ++PLLK+RG+H+L+A+I+THGDQDH GGL AVL+ +PV +++FNGTLA+ S Sbjct: 678 PYEVGAKVVVPLLKKRGVHQLEAVIMTHGDQDHIGGLLAVLQEIPVKSVVFNGTLAESAS 737 Query: 687 YSKLMNTALAAGVRLYPVQQGQALAPDDKTELMFLWPDPHKAGEA--KLPEVEDQNHKSV 744 + KLM +A+ + +Y D TE+ FL P ++GE LP +++QNH S+ Sbjct: 738 FRKLMLSAVEQRIPVYRAGADSVWKLDGHTEIRFLSPLFPESGEVIKALPLIKEQNHASL 797 Query: 745 AFRLEMNGRSFLFTGDMDKAAEEAILLDVKKAGAIQGGP-------IDVLKVAHHGSKTA 797 F L+MNG LFTGD D+AAE IL ++ IDV+KVAHHGSKT+ Sbjct: 798 VFVLQMNGSRVLFTGDTDQAAERKILQHLEGQSQDDAASRLAAEDRIDVMKVAHHGSKTS 857 Query: 798 TGADWLEFWNPGAAVISAGVNNLYGHPNGDVLRRLADSSTAVYRTDLQGEIQMEVRREGI 857 T A WL W P AAVISAGVNN+YGHP+ DV+ RL + +Y+T+L GEIQM ++ I Sbjct: 858 TSAPWLNAWKPTAAVISAGVNNMYGHPHPDVVGRLERFRSIIYQTNLHGEIQMRIKNGHI 917 Query: 858 AVRHKL 863 R K+ Sbjct: 918 ETRTKI 923 >B1DFF0.1 B1DFF0_9BACL DNA internalization-related competence protein ComEC/Rec2 Length = 863 Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust. Identities = 354/877 (40%), Positives = 472/877 (53%), Gaps = 52/877 (5%) Query: 1 VCWVIGS--AAGCLFSGYKLLIYTAGCLLLLAICAVSGRSGWKISVMLGLSLVAATLYWE 58 V W+ GS AA G L I +AG LL + G+S +++V+ + + A Sbjct: 11 VFWIAGSSIAAHLSIGGAALAICSAGVLLFALVLL--GQSTRRLAVVCLIGCMLAGGERM 68 Query: 59 WNEGRNVSLLPLAFGQSTAELNESYVTAEGQIVSPVERDGDRVDF--TVKLSRMGLDR-- 114 W + RNVS L L AE+ G IVS VE DGDR F T R+G + Sbjct: 69 WADARNVSALDLPGDSYEAEVT-------GTIVSAVEVDGDRAMFRVTADAVRVGGEAAP 121 Query: 115 KKVEGELIAVQITLQAESEIAVAAGWKRGDRVAVQGELKQPGEARNFGGFDYRAYL-LTQ 173 +K+ L+ VQ+ L + VAA W RGD V + GEL +P A N GGFDYR YL +Q Sbjct: 122 RKIRERLL-VQVRLAEQPHQQVAAAWHRGDNVRLAGELARPAGASNSGGFDYRRYLDSSQ 180 Query: 174 RIHWLLKGEGTASVQAVPPDSWGLSSILRWNDDVRAALGAGMDRLFREPHAGYMKGLVLG 233 IHWLLK +G +VQA P W +++L D R LGA MD+L+ +GYMKGLVLG Sbjct: 181 HIHWLLKVKGVGAVQAAPGPGWTAAAVLGRVDAARDWLGARMDQLYPADQSGYMKGLVLG 240 Query: 234 LQDDLDEETFKQFSQLGLTHILAISGMHVAVVVGVILFILRRLHFTRETALTVTIVLIPI 293 +++DLD E F+QFS+LGLTHILAISG+HVAV V + +LR L TRE L IV +P Sbjct: 241 IREDLDPEQFQQFSRLGLTHILAISGLHVAVFVYALGAVLRLLRMTRERLLVTLIVAVPF 300 Query: 294 YVLLSGAGPSIVRAGIMSMIALLAARFGILKDGMNIXXXXXXXXXVWNPYXXXXXXXXXX 353 YVLLSG+ PS+VRAG+M+M+ALLAAR LKDG+++ +WNP Sbjct: 301 YVLLSGSSPSVVRAGLMTMLALLAARMDKLKDGLHLLAAAAVAMLIWNPSFIQDVGFQLS 360 Query: 354 XXXTAGLMVYVPLVNPLLCRLPRW-----LSSTVSVTLVAQLVSFPLTVYYFNQXXXXXX 408 TAGL+++VP P+ +P W L + VT+VAQ VSFPLTV+YFNQ Sbjct: 361 FAVTAGLILFVP---PVRRAMPDWRKGKALLDLLVVTVVAQAVSFPLTVFYFNQFHLLSI 417 Query: 409 XXXXXXVPFITFXXXXXXXXXXXXXRFWQAGAGVLAHAAELMNDATFSAVGWMNGFSGGV 468 VPFI+F W G +LA + ND TF V W+ Sbjct: 418 PANLILVPFISFIVMPIGAVALIFGLLWPLGGQMLAAVSVYANDWTFLLVSWLGEMDAVR 477 Query: 469 LIWSSPSLLWICSYYGLLYGILYAMKRRAEARLAPQVMEDETKPLTKLDQPQDSRGRRVR 528 IW++P L WI ++Y L + A A DET PL Q++ + Sbjct: 478 TIWATPPLWWIAAWYLALA---LLCRLLPSAPAAVPADNDETMPL------QETAAGMEK 528 Query: 529 DAG-IWSGAGGNLQPTPFQMPESMRWSGPSXXXXXXXXXXXXYRGYHSEQLGGAGAISYL 587 DA IW P + P + + Y + L + L Sbjct: 529 DAAPIWELLEERKLPVWRRRPAGL-------TLALLVGAALLFYAYFPDLLKRTADVDVL 581 Query: 588 DVGQGDSILITTPGGAHILVDGGGTVSFGKK-EAWRVRRSPFEVGAKTLLPLLKQRGIHR 646 DVGQGDSI + TP G IL+DGGGT+SF K + W+ R PFEVG+K ++PLL +RG+H Sbjct: 582 DVGQGDSIYVRTPQGKRILIDGGGTLSFRKAGQEWKQRSDPFEVGSKVVVPLLMKRGVHS 641 Query: 647 LDAIILTHGDQDHAGGLQAVLEGMPVSALLFNGTLAKGDSYSKLMNTALAAGVRLYPVQQ 706 LD ++++H D DH GLQAVL+ +PV A+++NG+L + ++ TA+ G+ LY + Sbjct: 642 LDLLVVSHLDSDHIRGLQAVLDAIPVRAIVWNGSLKPAEDAEGILRTAVRKGIPLYRAEI 701 Query: 707 GQALAPDDKTELMFLWPDPHKAGEAKLPEVEDQNHKSVAFRLEMNGRSFLFTGDMDKAAE 766 G D TEL LWP AGE ++P +EDQN SV + + +FL +GD+ AE Sbjct: 702 GNQWKIDANTELTVLWPP--AAGE-EIPVIEDQNDDSVVLWMRIYQSTFLLSGDISSTAE 758 Query: 767 EAILLDVKKAGAIQG------GPIDVLKVAHHGSKTATGADWLEFWNPGAAVISAGVNNL 820 AI+ ++ AI G IDVLK+AHHGSK +T +WL FWNP A IS G N Sbjct: 759 SAIISLIRDQKAILSSSASTLGQIDVLKIAHHGSKYSTSEEWLRFWNPLQAAISVGATNT 818 Query: 821 YGHPNGDVLRRLADSSTAVYRTDLQGEIQMEVRREGI 857 YGHP+ DVL+RL S +RTD GEI+ +V GI Sbjct: 819 YGHPHPDVLKRLQQQSVTAFRTDQNGEIRYKVGLSGI 855 >A0AIT1.1 A0AIT1_LISW6 Complete genome Length = 719 Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 106/273 (38%), Positives = 155/273 (56%), Gaps = 30/273 (10%) Query: 581 AGAISYLDVGQGDSILITTPGGA-HILVDGGGTVSFGKKEAWRVRRSPFEVGAKTLLPLL 639 +G +S++D+GQGDSILI P A + L+D GG + F +KE W +R PF +G TL P+L Sbjct: 459 SGKVSFIDIGQGDSILIQLPNNAGNYLIDTGGQLPF-EKENWAKKRKPFTIGGSTLTPVL 517 Query: 640 KQRGIHRLDAIILTHGDQDHAGGLQAVLEGMPVSALLFNGTLAKGDSYSKLMNTALAAGV 699 K +GI+ LD +I+TH D DH GL + + + + L+F AKG +M LA Sbjct: 518 KSKGINSLDKVIITHSDADHMEGLDDLQKNIIIKELVF----AKGADTKAIMKDTLAV-- 571 Query: 700 RLYPVQQGQALA----PDDKTELMFLWPDPHKAGEAKLPEVEDQNHKSVAFRLEMNGRSF 755 + V++ LA DK + L+P KAGE N+ S+ + ++ + + Sbjct: 572 -MPEVKRTIILAGAKWQVDKNKFECLYPV--KAGEG-------SNNDSIVIKATLDNKIW 621 Query: 756 LFTGDMDKAAEEAILLDVKKAGAIQGGPIDVLKVAHHGSKTATGADWLEFWNPGAAVISA 815 LFTGD++ E+AIL KA D+LKV HHGSKT+T ++++ P AVIS Sbjct: 622 LFTGDLEAEGEKAILDKGIKA--------DILKVGHHGSKTSTSIEFIQKVKPSLAVISC 673 Query: 816 GVNNLYGHPNGDVLRRLADSSTAVYRTDLQGEI 848 GV N +GHP+ L L +++ + RTDLQGEI Sbjct: 674 GVKNRFGHPHEVTLNTLEEANVKILRTDLQGEI 706 Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 69/312 (22%), Positives = 145/312 (46%), Gaps = 19/312 (6%) Query: 89 QIVSPVERDGDRVDFTVKLSRMGLDRKKVEGELIAVQITLQAESEIAVAAGWKRGDRVAV 148 QI++ ++ DGD V+ ++ E I + + +E E + G +++ Sbjct: 49 QIINDLKVDGDSFQAVVRCNK----------EKIQLTYKINSEKEQQNLTKLRYGQFISL 98 Query: 149 QGELKQPGEARNFGGFDYRAYLLTQRIHWLLKGEGTASVQAVPPDSWGLSSILRWNDDVR 208 G L+ P RN F+Y+ YL Q I+++L+ + P S ++R ++R Sbjct: 99 SGNLETPPINRNQNQFNYQTYLKHQNINFILQANSLYITEHFDP-----SPLMRM-QNIR 152 Query: 209 AALGAGMDRLFREPHAGYMKGLVLGLQDDLDEETFKQFSQLGLTHILAISGMHVAVVVGV 268 + + + Y L+ G + E ++ + Q+G+ H+LAISG+HV +++G Sbjct: 153 LTIIKYLSNNISPIVSPYFLALITGENNGFSPEMYEAYQQMGVVHLLAISGLHVNLLIGA 212 Query: 269 ILFILRRLHFTRETALTVTIVLIPIYVLLSGAGPSIVRAGIMSMIALLAARFGILKDGMN 328 I F+L + TRE A+ +V +P Y +L+GA P ++RA M+ + LL+ ++ + Sbjct: 213 IYFLLLKFGMTRERAIIFLLVFLPFYAILTGANPPVIRAATMTALLLLSEKYSTKFSAFS 272 Query: 329 IXXXXXXXXXVWNPYXXXXXXXXXXXXXTAGLMVYVPLVNPLLCRLPRWLSSTVSVTLVA 388 + + PY + G+++ +L + + + +++L++ Sbjct: 273 VICLSFILFFILQPYVIYEVGFQLSYAVSFGIILS---SRQILTKQQNPFAKSFAISLIS 329 Query: 389 QLVSFPLTVYYF 400 ++S + +Y+F Sbjct: 330 TMMSSVVMMYHF 341 >C0ZB17.1 C0ZB17_BREBN Conserved hypothetical membrane protein Length = 800 Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 119/360 (33%), Positives = 181/360 (50%), Gaps = 20/360 (5%) Query: 48 LSLVAATLYWEWNEGRNVSLLPLAFGQSTAELNESYVTAEGQIVSPVERDGDRVDFTVKL 107 +S++A ++ + + + PLA + T + EG I SPV RDGD F V + Sbjct: 62 ISILAGLFFYGYENLHSSEVKPLAEREQT-------IWIEGVIDSPVRRDGDAARFFVTI 114 Query: 108 SRMGLDRKKVEG----ELIAVQITLQAESEIAVAAGWKRGDRVAVQGELKQPGEARNFGG 163 + G + + E IA+++ L + E W+RG +A L P ARN Sbjct: 115 TSWGENERDQNEHWSLEKIALRVKLASFQEAKQIEQWRRGSVIAAPIRLSLPAPARNPHA 174 Query: 164 FDYRAYLLTQRIHWLLKGEGTASVQAVPPDSWGLSSILRWNDDVRAALGAG-MDRLFREP 222 FDY +YL Q +H + GE + + P +S W D GA ++ LF + Sbjct: 175 FDYASYLYWQGVH--VTGETSYQAVEMTPAFSVWASFQEWQDS-----GARRIELLFTDT 227 Query: 223 H-AGYMKGLVLGLQDDLDEETFKQFSQLGLTHILAISGMHVAVVVGVILFILRRLHFTRE 281 AGYMK L+LGL +++ E +S LGL+HILAISG+HV +V + ++ L R+ R Sbjct: 228 ETAGYMKSLLLGLGQEVNPELAAMYSNLGLSHILAISGLHVTLVSSMFMWCLERIGIRRR 287 Query: 282 TALTVTIVLIPIYVLLSGAGPSIVRAGIMSMIALLAARFGILKDGMNIXXXXXXXXXVWN 341 A VTI+ + YVLL GA S +R+G+M + LL G DG ++ + N Sbjct: 288 LAFVVTILFLIGYVLLVGASASAIRSGLMGSVGLLCQVVGKKLDGKDVWAGALILMLLMN 347 Query: 342 PYXXXXXXXXXXXXXTAGLMVYVPLVNPLLCRLPRWLSSTVSVTLVAQLVSFPLTVYYFN 401 PY T GL+++VP + R+P W+ + ++VTL AQLVSFP +Y+F+ Sbjct: 348 PYQLWHVGFQLSFAVTLGLIIFVPYSLHVFVRVPVWIRTLLAVTLSAQLVSFPFLIYHFH 407 Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 107/276 (38%), Positives = 149/276 (53%), Gaps = 21/276 (7%) Query: 584 ISYLDVGQGDSILITTPGGAHILVDGGGTVSFGKKEAWRVRRSPFEVGAKTLLPLLKQRG 643 I++LDVGQGDSI++ L+D GGT+ F E W +R PFEVG +LP L RG Sbjct: 535 ITFLDVGQGDSIVVEIGDQKVYLMDAGGTMQFPAAEPWMEKRDPFEVGKDVVLPFLMARG 594 Query: 644 IHRLDAIILTHGDQDHAGGLQAVLEGMPVSALLFNGTLAKGDSYSKLMNTALAAGVRLYP 703 I ++D +I+THGD DH GG ++++ +L NGT A +++ GV + Sbjct: 595 IEKIDRVIMTHGDLDHIGGFKSLVPHFSFGEVLVNGT-APSKLEGEIVQLFQQEGVPILT 653 Query: 704 VQQGQALAPDDKTELMFLWPDPHKAGEAKLPEVEDQNHKSVAFRLEMNGRSFLFTGDMDK 763 GQ+ + E +L P GE+ N SV +L ++ LFTGD++K Sbjct: 654 GLPGQSWSDAPGIEWKWLHP-----GESTF----SGNDASVILQLTAFNKTVLFTGDIEK 704 Query: 764 AAEEAILLDVKKAGAIQGG--PIDVLKVAHHGSKTATGADWLEFWNPGAAVISAGVNNLY 821 E + +Q G +DVLKVAHHGS T++ + L P AAVISAGV N Y Sbjct: 705 DGESQL---------VQNGLTSVDVLKVAHHGSNTSSTEELLAVTAPKAAVISAGVKNRY 755 Query: 822 GHPNGDVLRRLADSSTAVYRTDLQGEIQMEVRREGI 857 GHP+ +VL RL S +AVYRTD G I + + G+ Sbjct: 756 GHPSPEVLHRLKKSGSAVYRTDAHGAITLVITPTGL 791 >Q71ZI8.1 Q71ZI8_LISMF ComEC/Rec2 family protein Length = 719 Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 105/273 (38%), Positives = 154/273 (56%), Gaps = 30/273 (10%) Query: 581 AGAISYLDVGQGDSILITTP-GGAHILVDGGGTVSFGKKEAWRVRRSPFEVGAKTLLPLL 639 +G +S++DVGQGDSILI P + L+D GG + F +KEAW +R PF +G TL P+L Sbjct: 459 SGKVSFIDVGQGDSILIQLPYNQGNYLIDTGGQLPF-EKEAWAKKRKPFTIGGSTLSPVL 517 Query: 640 KQRGIHRLDAIILTHGDQDHAGGLQAVLEGMPVSALLFNGTLAKGDSYSKLMNTALAAGV 699 K +GI+ LD +I+TH D DH GL + + + + L+F AKG +M ALAA Sbjct: 518 KSKGINSLDKVIITHSDADHMEGLDDLQKNITIKELIF----AKGAENKPIMKEALAAMP 573 Query: 700 RLYPVQQGQALAPDD----KTELMFLWPDPHKAGEAKLPEVEDQNHKSVAFRLEMNGRSF 755 + V+Q LA + L+PD KAGE N S+ + ++G+ + Sbjct: 574 K---VKQTIILAGAKWQIGENSFECLYPD--KAGEGG-------NDDSIVLKAVLDGKIW 621 Query: 756 LFTGDMDKAAEEAILLDVKKAGAIQGGPIDVLKVAHHGSKTATGADWLEFWNPGAAVISA 815 LFTGD++ E+ I KA D+LKV HHGSKT++ ++++ P AVIS Sbjct: 622 LFTGDLEANGEKGISEQPIKA--------DILKVGHHGSKTSSSKEFIQKVKPTFAVISC 673 Query: 816 GVNNLYGHPNGDVLRRLADSSTAVYRTDLQGEI 848 G+NN +GHP+ + + L + + RTD+QGEI Sbjct: 674 GLNNRFGHPHAETINTLEKAGVTILRTDVQGEI 706 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/341 (21%), Positives = 148/341 (43%), Gaps = 24/341 (7%) Query: 65 VSLLPLAFGQSTAELNESYVTA-----EGQIVSPVERDGDRVDFTVKLSRMGLDRKKVEG 119 + L +F + N S TA QI+ ++ DGD V+ E Sbjct: 20 IYFLTYSFLFVIEKFNTSSFTATEYNGNCQIIDNLKIDGDSFQTFVR----------CEK 69 Query: 120 ELIAVQITLQAESEIAVAAGWKRGDRVAVQGELKQPGEARNFGGFDYRAYLLTQRIHWLL 179 E + + E E G ++V ++ P RN F+Y+ YL Q +H++L Sbjct: 70 EKFQLSYKITTEEEQQKLKKLHYGQFISVSANIETPSVNRNQNQFNYQTYLKNQNVHYIL 129 Query: 180 KGEGTASVQAVPPDSWGLSSILRWNDDVRAALGAGMDRLFREPHAGYMKGLVLGLQDDLD 239 + A P S L ++R + + + Y L+ G ++ Sbjct: 130 RASNLAISSQFSP------SFLMKLQNIRLKIITHLTEKISPTISPYCLALISGEKNGFS 183 Query: 240 EETFKQFSQLGLTHILAISGMHVAVVVGVILFILRRLHFTRETALTVTIVLIPIYVLLSG 299 E ++ + Q+G+ H+LAISG+HV +++G I F+L + TR+ A+T +V +P YV+L+G Sbjct: 184 PEMYEVYQQMGVVHLLAISGLHVNLLIGAIYFLLLKFGITRDRAITCLLVFLPFYVILTG 243 Query: 300 AGPSIVRAGIMSMIALLAARFGILKDGMNIXXXXXXXXXVWNPYXXXXXXXXXXXXXTAG 359 A P ++RA M+ + LL+ ++ + + PY + G Sbjct: 244 ANPPVIRAATMTALLLLSEKYTTKWSSFSAICLSFILFFLLQPYIIREVGFQLSYAVSFG 303 Query: 360 LMVYVPLVNPLLCRLPRWLSSTVSVTLVAQLVSFPLTVYYF 400 +++ ++ R + +++++ ++ ++S + +Y+F Sbjct: 304 IILS---SRQIVTRQQNAFTKSLAISFISTIMSSAVMMYHF 341 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 5,066,387,975 Number of extensions: 212443733 Number of successful extensions: 555149 Number of sequences better than 1.0e-05: 1309 Number of HSP's gapped: 552231 Number of HSP's successfully gapped: 1681 Length of query: 871 Length of database: 3,060,696,203 Length adjustment: 145 Effective length of query: 726 Effective length of database: 1,694,649,028 Effective search space: 1230315194328 Effective search space used: 1230315194328 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 136 (57.0 bits)