BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0290.0026.p (174 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KFZ4.1 B3KFZ4_9BACI CMP/dCMP deaminase zinc-binding 295 1e-78 B1DFF1.1 B1DFF1_9BACL CMP/dCMP deaminase zinc-binding 269 8e-71 B0TI62.1 B0TI62_HELMI Come operon protein 2 130 3e-29 Q2RFW8.1 Q2RFW8_MOOTA CMP/dCMP deaminase, zinc-binding 125 1e-27 B9DX74.1 B9DX74_CLOK1 Putative uncharacterized protein 124 2e-27 >B3KFZ4.1 B3KFZ4_9BACI CMP/dCMP deaminase zinc-binding Length = 173 Score = 295 bits (754), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 137/173 (79%), Positives = 153/173 (88%) Query: 2 LMTVAYRKNWDTYFMDIACMVSTRSRCPRRHVGAVLVQGKKLLGTAYNGAPMGVPDCSEA 61 +M+ RK+WDTYFMDIA MVSTRS+CPRRHVGAVLVQGKKLLGTAYNGAPMGVPDCSEA Sbjct: 1 MMSADQRKDWDTYFMDIAFMVSTRSQCPRRHVGAVLVQGKKLLGTAYNGAPMGVPDCSEA 60 Query: 62 GCMVSEQYERELVNGVETMVKKQRCIRTIHAEQNLLLFTDRSDREGSTVYVTDEPCWTCA 121 GCM++E YE + +G E+MVKKQRCIRTIHAEQNLLLFTDR DREGSTVYVTDEPCWTCA Sbjct: 61 GCMIAEDYELVVQDGKESMVKKQRCIRTIHAEQNLLLFTDRIDREGSTVYVTDEPCWTCA 120 Query: 122 NMLANSGIVEIVYLRPYRKDMEKVEAMLASKGIIFRQLENYEPPKETMITVSE 174 NMLANSGIVE+V+ RPY KD KV M+ KGI FRQLE YEPP+ET++TV+E Sbjct: 121 NMLANSGIVEVVFHRPYPKDSGKVSRMMEQKGISFRQLEAYEPPRETLMTVAE 173 >B1DFF1.1 B1DFF1_9BACL CMP/dCMP deaminase zinc-binding Length = 176 Score = 269 bits (687), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 125/169 (73%), Positives = 145/169 (85%), Gaps = 1/169 (0%) Query: 6 AYRKNWDTYFMDIACMVSTRSRCPRRHVGAVLVQGKKLLGTAYNGAPMGVPDCSEAGCMV 65 A RK+WDTYFMDIA MVSTRSRC RRHVG+VLVQGKKLLGTAYNGAPMGV DCSEAGCM+ Sbjct: 7 ASRKDWDTYFMDIAYMVSTRSRCSRRHVGSVLVQGKKLLGTAYNGAPMGVQDCSEAGCMI 66 Query: 66 SEQYERELV-NGVETMVKKQRCIRTIHAEQNLLLFTDRSDREGSTVYVTDEPCWTCANML 124 +E++E + NG E MVKKQRCIRTIHAEQNLLLFTDR+DREGSTVYVTD+PCWTCANML Sbjct: 67 TEEWETRIGDNGQEHMVKKQRCIRTIHAEQNLLLFTDRADREGSTVYVTDQPCWTCANML 126 Query: 125 ANSGIVEIVYLRPYRKDMEKVEAMLASKGIIFRQLENYEPPKETMITVS 173 ANSG+ EIV+ R Y KD +KV +++ KGI+FR L +YEPP + + V+ Sbjct: 127 ANSGVKEIVFHRGYPKDSDKVSLLMSQKGIVFRTLTDYEPPPQASMKVT 175 >B0TI62.1 B0TI62_HELMI Come operon protein 2 Length = 146 Score = 130 bits (328), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 60/136 (44%), Positives = 88/136 (64%), Gaps = 16/136 (11%) Query: 8 RKNWDTYFMDIACMVSTRSRCPRRHVGAVLVQGKKLLGTAYNGAPMGVPDCSEAGCMVSE 67 RK+WD+YF+DIA VS+RS CPRR VGAV+V+ K++ GT YNG+P G+P C++AGC + Sbjct: 2 RKDWDSYFIDIAFAVSSRSTCPRRSVGAVIVKDKRIKGTGYNGSPAGLPHCTDAGCCMWN 61 Query: 68 QYERELVNGVETMVKKQRCIRTIHAEQNLLLFTDRSDREGSTVYVTDEPCWTCANMLANS 127 + C+RTIHAE N ++ +R+G+T+YVTD PC CA ++ +S Sbjct: 62 NH----------------CVRTIHAEVNAIMECSPEERKGATIYVTDRPCAECAKVIISS 105 Query: 128 GIVEIVYLRPYRKDME 143 GI +V+ R Y + + Sbjct: 106 GIRRVVFARDYHTEQD 121 >Q2RFW8.1 Q2RFW8_MOOTA CMP/dCMP deaminase, zinc-binding Length = 135 Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 62/136 (45%), Positives = 84/136 (61%), Gaps = 16/136 (11%) Query: 8 RKNWDTYFMDIACMVSTRSRCPRRHVGAVLVQGKKLLGTAYNGAPMGVPDCSEAGCMVSE 67 RK WD YF+DIA V++RS C R VGAV+V+ K++ GT YNGAP G+P C E GC Sbjct: 2 RKEWDEYFLDIAFQVASRSTCNRLAVGAVVVKDKRIKGTGYNGAPHGLPHCLEVGC---- 57 Query: 68 QYERELVNGVETMVKKQRCIRTIHAEQNLLLFTDRSDREGSTVYVTDEPCWTCANMLANS 127 +++ + C+RTIHAE N LL +R+G+T+YVTD PC CA ++ S Sbjct: 58 ------------LMEGEHCLRTIHAEINALLECSPEERQGATMYVTDYPCERCALVIVQS 105 Query: 128 GIVEIVYLRPYRKDME 143 GI +VY RPY + + Sbjct: 106 GIKRLVYARPYHVNHD 121 >B9DX74.1 B9DX74_CLOK1 Putative uncharacterized protein Length = 141 Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 61/131 (46%), Positives = 77/131 (58%), Gaps = 16/131 (12%) Query: 8 RKNWDTYFMDIACMVSTRSRCPRRHVGAVLVQGKKLLGTAYNGAPMGVPDCSEAGCMVSE 67 RK+WD YF+DIA V+ RS CPR HVGAVLV+ +++ GT YNG+P G+ C EAGC Sbjct: 5 RKDWDNYFIDIAFQVAERSTCPRLHVGAVLVKNRRIKGTGYNGSPRGLEHCDEAGC---- 60 Query: 68 QYERELVNGVETMVKKQRCIRTIHAEQNLLLFTDRSDREGSTVYVTDEPCWTCANMLANS 127 +K CIRTIHAE N LL DRE ST+YVT PC C ++ N Sbjct: 61 ------------YMKDNHCIRTIHAEVNCLLEVSPDDRENSTLYVTHMPCPECQKLIINC 108 Query: 128 GIVEIVYLRPY 138 G+ ++Y Y Sbjct: 109 GVKRVIYCEDY 119 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.134 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 947,846,260 Number of extensions: 34514879 Number of successful extensions: 75555 Number of sequences better than 1.0e-05: 794 Number of HSP's gapped: 74316 Number of HSP's successfully gapped: 794 Length of query: 174 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 48 Effective length of database: 1,873,648,313 Effective search space: 89935119024 Effective search space used: 89935119024 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)