BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0290.0025.p
         (229 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C4FWP5.1 C4FWP5_9FIRM Putative uncharacterized protein                 94   1e-17
B3KFZ3.1 B3KFZ3_9BACI Competence protein ComEA helix-hairpin-hel...    88   6e-16
Q3IE25.1 Q3IE25_PSEHT Putative uncharacterized protein                 78   7e-13
B7JAK4.1 B7JAK4_ACIF2 Competence protein ComEA helix-hairpin-hel...    77   1e-12
B5EQJ4.1 B5EQJ4_ACIF5 Competence protein ComEA helix-hairpin-hel...    77   1e-12

>C4FWP5.1 C4FWP5_9FIRM Putative uncharacterized protein
          Length = 222

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/63 (66%), Positives = 53/63 (84%)

Query: 167 GRINVNTADAAALMDLPGIGGKKAQAIIDYRSSKGAFHSLSDLGEVKGIGPKMLEKLKPL 226
           G++N+N AD + L  LPGIG KKAQAIIDYR++ G+FHSL DLG+VKGIGPK+L+KL+ L
Sbjct: 159 GKVNINQADLSQLETLPGIGAKKAQAIIDYRTANGSFHSLEDLGKVKGIGPKLLDKLRDL 218

Query: 227 VSF 229
           V F
Sbjct: 219 VIF 221


>B3KFZ3.1 B3KFZ3_9BACI Competence protein ComEA helix-hairpin-helix repeat
           protein
          Length = 220

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/61 (70%), Positives = 49/61 (80%)

Query: 167 GRINVNTADAAALMDLPGIGGKKAQAIIDYRSSKGAFHSLSDLGEVKGIGPKMLEKLKPL 226
           G INVNTADAA LM+LPGIG  KA+AIIDYR+  G F + +DL  VKGIGPKMLEK+KP 
Sbjct: 158 GLINVNTADAATLMELPGIGEAKAKAIIDYRNQFGPFRTQADLMNVKGIGPKMLEKMKPY 217

Query: 227 V 227
           V
Sbjct: 218 V 218


>Q3IE25.1 Q3IE25_PSEHT Putative uncharacterized protein
          Length = 99

 Score = 77.8 bits (190), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 45/61 (73%)

Query: 169 INVNTADAAALMDLPGIGGKKAQAIIDYRSSKGAFHSLSDLGEVKGIGPKMLEKLKPLVS 228
           +N+NTAD + L  LPGIG KKAQAIIDYR +KG F SL DL  VKGIG K+  KL+  VS
Sbjct: 39  LNINTADVSQLSKLPGIGKKKAQAIIDYREAKGNFTSLEDLKMVKGIGKKLAAKLEGKVS 98

Query: 229 F 229
           F
Sbjct: 99  F 99


>B7JAK4.1 B7JAK4_ACIF2 Competence protein ComEA helix-hairpin-helix repeat
           protein
          Length = 135

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 47/61 (77%)

Query: 169 INVNTADAAALMDLPGIGGKKAQAIIDYRSSKGAFHSLSDLGEVKGIGPKMLEKLKPLVS 228
           +N+NTADA AL  LPGIG  KAQA+++YR + G F S+ +L  V GIGP++LE+L+P++S
Sbjct: 24  VNINTADATALDALPGIGPAKAQAVLEYRQAHGPFRSVDELTSVHGIGPRLLERLRPVLS 83

Query: 229 F 229
            
Sbjct: 84  L 84


>B5EQJ4.1 B5EQJ4_ACIF5 Competence protein ComEA helix-hairpin-helix repeat
           protein
          Length = 135

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 47/61 (77%)

Query: 169 INVNTADAAALMDLPGIGGKKAQAIIDYRSSKGAFHSLSDLGEVKGIGPKMLEKLKPLVS 228
           +N+NTADA AL  LPGIG  KAQA+++YR + G F S+ +L  V GIGP++LE+L+P++S
Sbjct: 24  VNINTADATALDALPGIGPAKAQAVLEYRQAHGPFRSVDELTSVHGIGPRLLERLRPVLS 83

Query: 229 F 229
            
Sbjct: 84  L 84


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.312    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 676,643,817
Number of extensions: 17970672
Number of successful extensions: 37774
Number of sequences better than 1.0e-05: 564
Number of HSP's gapped: 37801
Number of HSP's successfully gapped: 575
Length of query: 229
Length of database: 3,060,696,203
Length adjustment: 131
Effective length of query: 98
Effective length of database: 1,826,543,238
Effective search space: 179001237324
Effective search space used: 179001237324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 129 (54.3 bits)