BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0290.0019.p (334 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2WNG3.1 C2WNG3_BACCE Transcriptional regulator, AraC 179 3e-43 C2XCJ6.1 C2XCJ6_BACCE Transcriptional regulator, AraC 178 5e-43 C2PWC2.1 C2PWC2_BACCE Transcriptional regulator, AraC 177 1e-42 C3A6V7.1 C3A6V7_BACMY Transcriptional regulator, AraC 176 4e-42 A9VIC3.1 A9VIC3_BACWK Transcriptional regulator, AraC family 175 6e-42 >C2WNG3.1 C2WNG3_BACCE Transcriptional regulator, AraC Length = 322 Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 96/300 (32%), Positives = 170/300 (56%), Gaps = 6/300 (2%) Query: 28 LKDRYTDRIILPEAIGNGSISRTRLRPGMEVIMADFQITDDHIMHLHGNLPMVDLTFWIQ 87 +++RY + +P+ IG G + R GME++++++Q +H + + MV+L F +Q Sbjct: 23 VEERY---MYVPKTIGMGEVRRWSSFSGMEIVLSNYQFHKNHRIQFASDAAMVELNFCLQ 79 Query: 88 GNIEISHSGIQEQISAGLGHLTFGQEEQIELKYTAHEAFAICEVRLATALFDAFMDELGL 147 G+ E+ ++ AG +L F + ++ +Y + + LF+ FM + Sbjct: 80 GSGEVQVGYSTNKLMAGNSYLYFMNDFEVLFEYEKETPLYSLAIGIPVQLFNHFMLNCAI 139 Query: 148 AR-YTYSAILDGRLNCMFSQSILPKVQTILQDMRSHPFAGPLRKMFLEGKTLELLALCFQ 206 + + + I+ + F I I++ M +P + ++ +E K LELL++ F Sbjct: 140 EKSHDFHTIIGNQSFTKFQTPIDALTSNIIKRMLENPQKDRINQLEIESKALELLSIYFG 199 Query: 207 HTLLEDEAPSQRRTGRLRKDDIERVREAGRILQQRMEQPPSLLELSRLAGISDSKLKFGF 266 LL D ++R +L K D+ ++++A IL QRME PPSLLEL+++ G++D KLK GF Sbjct: 200 KVLLNDRDANKR--SQLSKKDLNKIKQAEEILLQRMESPPSLLELAKIVGLNDYKLKIGF 257 Query: 267 RELYGTTVFGYLKEKRLDKAKELLETERINVCDAALMVGYSNPSHFAAIFKERFGSNPRE 326 +EL+GT+ F YL+E+R+++A LL + NV + A+ VGY+N SHF+ FK+++G P E Sbjct: 258 KELFGTSTFAYLREQRMERAMLLLRSGTSNVTETAVAVGYNNISHFSESFKKKYGMKPSE 317 >C2XCJ6.1 C2XCJ6_BACCE Transcriptional regulator, AraC Length = 322 Score = 178 bits (452), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 96/300 (32%), Positives = 170/300 (56%), Gaps = 6/300 (2%) Query: 28 LKDRYTDRIILPEAIGNGSISRTRLRPGMEVIMADFQITDDHIMHLHGNLPMVDLTFWIQ 87 +++RY + +P+ IG G + R GME++++++Q +H + + MV+L F +Q Sbjct: 23 VEERY---MYVPKTIGMGEVRRWSSFSGMEIVLSNYQFHKNHRIQFASDAAMVELNFCLQ 79 Query: 88 GNIEISHSGIQEQISAGLGHLTFGQEEQIELKYTAHEAFAICEVRLATALFDAFMDELGL 147 G+ E+ ++ AG +L F + ++ +Y + + LF+ FM + Sbjct: 80 GSGEVQVGYSTNKLMAGNSYLYFMNDFEVLFEYEKETPLYSLAIGIPVQLFNHFMLNCAI 139 Query: 148 AR-YTYSAILDGRLNCMFSQSILPKVQTILQDMRSHPFAGPLRKMFLEGKTLELLALCFQ 206 + + + I+ + F I I++ M +P + ++ +E K LELL++ F Sbjct: 140 EKSHDFHTIIGNQSFKKFQTPIDALTSNIIKRMLENPQKDRINQLEIESKALELLSIYFG 199 Query: 207 HTLLEDEAPSQRRTGRLRKDDIERVREAGRILQQRMEQPPSLLELSRLAGISDSKLKFGF 266 LL D ++R +L K D+ ++++A IL QRME PPSLLEL+++ G++D KLK GF Sbjct: 200 KVLLNDRDANKR--SQLSKKDLNKIKQAEEILLQRMESPPSLLELAKIVGLNDYKLKIGF 257 Query: 267 RELYGTTVFGYLKEKRLDKAKELLETERINVCDAALMVGYSNPSHFAAIFKERFGSNPRE 326 +EL+GT+ F YL+E+R+++A LL + NV + A+ VGY+N SHF+ FK+++G P E Sbjct: 258 KELFGTSTFAYLREQRMERAMLLLRSGTSNVTETAVAVGYNNISHFSESFKKKYGMKPSE 317 >C2PWC2.1 C2PWC2_BACCE Transcriptional regulator, AraC Length = 322 Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 96/294 (32%), Positives = 165/294 (56%), Gaps = 7/294 (2%) Query: 38 LPEAIGNGSISRTRLRPGMEVIMADFQITDDHIMHLHGNLPMVDLTFWIQG--NIEISHS 95 +P+ IG G I R GME++++++Q ++H + N MV+L F +QG +++ HS Sbjct: 30 VPKTIGMGEIRRWTSFSGMEIVLSNYQFHNNHRIQFASNAAMVELNFCLQGFGGVQVGHS 89 Query: 96 GIQEQISAGLGHLTFGQEEQIELKYTAHEAFAICEVRLATALFDAFMDELGLAR-YTYSA 154 + + G +L F + + +Y + + LF+ FM + + + + Sbjct: 90 SYE--LMTGNSYLYFMNDFDVVFEYEKETPLYSLAIGIPVQLFNHFMMNNAIEKSLDFHS 147 Query: 155 ILDGRLNCMFSQSILPKVQTILQDMRSHPFAGPLRKMFLEGKTLELLALCFQHTLLEDEA 214 IL + F I +++ M HP + ++ LE K LELL++ LL D Sbjct: 148 ILGNQSFKKFQNPIDSITSNLIKRMIEHPQKDRISQLELESKALELLSIHLGRVLLNDCD 207 Query: 215 PSQRRTGRLRKDDIERVREAGRILQQRMEQPPSLLELSRLAGISDSKLKFGFRELYGTTV 274 ++R +L K D+ ++++A IL QRME PPSLLEL+++ ++D KLK GF+EL+G + Sbjct: 208 ANKR--SQLSKQDLNKIKQAEEILLQRMESPPSLLELAKIVELNDYKLKIGFKELFGMST 265 Query: 275 FGYLKEKRLDKAKELLETERINVCDAALMVGYSNPSHFAAIFKERFGSNPREWI 328 F YL+EKR++ A +LL + NV + A VGY+N SHF+ +F++++G NP E++ Sbjct: 266 FAYLREKRMEHAIDLLRSGNSNVTETAFAVGYNNVSHFSELFRKKYGMNPSEFL 319 >C3A6V7.1 C3A6V7_BACMY Transcriptional regulator, AraC Length = 319 Score = 176 bits (445), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 95/294 (32%), Positives = 165/294 (56%), Gaps = 7/294 (2%) Query: 38 LPEAIGNGSISRTRLRPGMEVIMADFQITDDHIMHLHGNLPMVDLTFWIQG--NIEISHS 95 +P+ IG G I R GME++++++Q ++H + + MV+L F +QG +++ HS Sbjct: 27 VPKTIGMGEIRRCTSFSGMEIVLSNYQFHNNHRIQFASDAAMVELNFCLQGFGGVQVGHS 86 Query: 96 GIQEQISAGLGHLTFGQEEQIELKYTAHEAFAICEVRLATALFDAFMDELGLAR-YTYSA 154 + + G +L F + + +Y + + LF+ FM + + + + Sbjct: 87 SYE--LMTGNSYLYFMNDFDVVFEYEKETPLYSLAIGIPVQLFNHFMMNNAIEKSLDFHS 144 Query: 155 ILDGRLNCMFSQSILPKVQTILQDMRSHPFAGPLRKMFLEGKTLELLALCFQHTLLEDEA 214 IL + F I +++ M HP + ++ LE K LELL++ LL D Sbjct: 145 ILGNQSFKKFQNPIDSITSNLIKRMIEHPQKDRISQLELESKALELLSIHLGRVLLNDCD 204 Query: 215 PSQRRTGRLRKDDIERVREAGRILQQRMEQPPSLLELSRLAGISDSKLKFGFRELYGTTV 274 ++R +L K D+ ++++A IL QRME PPSLLEL+++ ++D KLK GF+EL+G + Sbjct: 205 ANKR--SQLSKQDLNKIKQAEEILLQRMESPPSLLELAKIVELNDYKLKIGFKELFGMST 262 Query: 275 FGYLKEKRLDKAKELLETERINVCDAALMVGYSNPSHFAAIFKERFGSNPREWI 328 F YL+EKR++ A +LL + NV + A VGY+N SHF+ +F++++G NP E++ Sbjct: 263 FAYLREKRMEHAIDLLRSGNSNVTETAFAVGYNNVSHFSELFRKKYGMNPSEFL 316 >A9VIC3.1 A9VIC3_BACWK Transcriptional regulator, AraC family Length = 319 Score = 175 bits (443), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 95/294 (32%), Positives = 165/294 (56%), Gaps = 7/294 (2%) Query: 38 LPEAIGNGSISRTRLRPGMEVIMADFQITDDHIMHLHGNLPMVDLTFWIQG--NIEISHS 95 +P+ IG G I R GME++++++Q ++H + + MV+L F +QG +++ HS Sbjct: 27 VPKTIGMGEIRRWTSFSGMEIVLSNYQFHNNHRIQFASDAAMVELNFCLQGFGGVQVGHS 86 Query: 96 GIQEQISAGLGHLTFGQEEQIELKYTAHEAFAICEVRLATALFDAFMDELGLAR-YTYSA 154 + + G +L F + + +Y + + LF+ FM + + + + Sbjct: 87 SYE--LMTGNSYLYFMNDFDVVFEYEKETPLYSLAIGIPVQLFNHFMMNNAIEKSLDFHS 144 Query: 155 ILDGRLNCMFSQSILPKVQTILQDMRSHPFAGPLRKMFLEGKTLELLALCFQHTLLEDEA 214 IL + F I +++ M HP + ++ LE K LELL++ LL D Sbjct: 145 ILGNQSFKKFQNPIDSITSNLIKRMIEHPQKDRISQLELESKALELLSIHLGRVLLNDCD 204 Query: 215 PSQRRTGRLRKDDIERVREAGRILQQRMEQPPSLLELSRLAGISDSKLKFGFRELYGTTV 274 ++R +L K D+ ++++A IL QRME PPSLLEL+++ ++D KLK GF+EL+G + Sbjct: 205 ANKR--SQLSKQDLNKIKQAEEILLQRMESPPSLLELAKIVELNDYKLKIGFKELFGMST 262 Query: 275 FGYLKEKRLDKAKELLETERINVCDAALMVGYSNPSHFAAIFKERFGSNPREWI 328 F YL+EKR++ A +LL + NV + A VGY+N SHF+ +F++++G NP E++ Sbjct: 263 FAYLREKRMEHAIDLLRSGNSNVTETAFAVGYNNVSHFSELFRKKYGMNPSEFL 316 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.139 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,956,450,885 Number of extensions: 77888872 Number of successful extensions: 189560 Number of sequences better than 1.0e-05: 1263 Number of HSP's gapped: 190625 Number of HSP's successfully gapped: 1263 Length of query: 334 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 198 Effective length of database: 1,779,438,163 Effective search space: 352328756274 Effective search space used: 352328756274 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)