BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0290.0016.p (240 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DHI3.1 B1DHI3_9BACL Glycoside hydrolase family 16 378 e-103 Q846Q0.1 Q846Q0_PAEMA Beta-1,3-1,4-glucanase EC=3.2.1.73 373 e-102 P23904.2 GUB_PAEMA Beta-glucanase EC=3.2.1.73 370 e-101 A4F264.1 A4F264_9BACL Putative endo-1,3-1,4-b-glucanases 369 e-100 Q6YAT3.1 Q6YAT3_9BACI Beta-1,3-1,4-glucanase 368 e-100 >B1DHI3.1 B1DHI3_9BACL Glycoside hydrolase family 16 Length = 237 Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust. Identities = 182/237 (76%), Positives = 200/237 (84%) Query: 4 LKKLYSXXXXXXXXXXXXXIPSVSAATVFYEPLTYFNPVTWQKADGYSNGGMFNCTWRAD 63 +KK S + S AT F+EPLTY+NP TWQKADGYSNGGMFNCTWRA+ Sbjct: 1 MKKKASLLMAGSAIVSMLFVSSSYGATEFWEPLTYYNPATWQKADGYSNGGMFNCTWRAN 60 Query: 64 NISFTGGGQLRLALTSSSYNKFDGAEMRSVYKYGYGKYEVSMMPAKNSGIVSSFFTYTGP 123 N+SFT G L+L LTSS+YN FD AE RSVYKYGYG YEVSM PAKN+GIVSSFFTYTGP Sbjct: 61 NVSFTSDGHLKLGLTSSAYNVFDCAEYRSVYKYGYGLYEVSMKPAKNTGIVSSFFTYTGP 120 Query: 124 SEGTSWDEIDIEFLGKDTTKVQFNYFTNGVGGHEKVVNLGFDASTGYHTYAFDWQPGYIK 183 ++GT WDEIDIEFLGKDTTKVQFNYFTNGVGGHEK+V+LGFDAS G+HTYAF+WQ G IK Sbjct: 121 ADGTPWDEIDIEFLGKDTTKVQFNYFTNGVGGHEKIVDLGFDASQGFHTYAFNWQAGSIK 180 Query: 184 WYVDGVLKHTATSNIPSEPGKIMMNLWNGTGVDSWLGSYNGANPLYAYYDWLKYTGN 240 WYVDGVLKHTATSNIPS PGKIMMN+WNGTGVDSWLG+YNGANPLYA YDW+KYT N Sbjct: 181 WYVDGVLKHTATSNIPSNPGKIMMNIWNGTGVDSWLGAYNGANPLYAEYDWMKYTSN 237 >Q846Q0.1 Q846Q0_PAEMA Beta-1,3-1,4-glucanase EC=3.2.1.73 Length = 237 Score = 373 bits (958), Expect = e-102, Method: Compositional matrix adjust. Identities = 176/216 (81%), Positives = 195/216 (90%) Query: 25 SVSAATVFYEPLTYFNPVTWQKADGYSNGGMFNCTWRADNISFTGGGQLRLALTSSSYNK 84 S A +VF+EPL+YFNP TW+KADGYSNGG+FNCTWRA+N++FT G+L+L LTSS+YNK Sbjct: 22 SALAGSVFWEPLSYFNPSTWEKADGYSNGGVFNCTWRANNVNFTNDGKLKLGLTSSAYNK 81 Query: 85 FDGAEMRSVYKYGYGKYEVSMMPAKNSGIVSSFFTYTGPSEGTSWDEIDIEFLGKDTTKV 144 FD AE RS YGYG YEVSM PAKN+GIVSSFFTYTGP+ GT WDEIDIEFLGKDTTKV Sbjct: 82 FDCAEYRSTNIYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTKV 141 Query: 145 QFNYFTNGVGGHEKVVNLGFDASTGYHTYAFDWQPGYIKWYVDGVLKHTATSNIPSEPGK 204 QFNY+TNGVGGHEKV++LGFDAS G+HTYAFDWQPGYIKWYVDGVLKHTAT+NIPS PGK Sbjct: 142 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHTATANIPSTPGK 201 Query: 205 IMMNLWNGTGVDSWLGSYNGANPLYAYYDWLKYTGN 240 IMMNLWNGTGVD WLGSYNGANPLYA YDW+KYT N Sbjct: 202 IMMNLWNGTGVDDWLGSYNGANPLYAEYDWVKYTSN 237 >P23904.2 GUB_PAEMA Beta-glucanase EC=3.2.1.73 Length = 237 Score = 370 bits (950), Expect = e-101, Method: Compositional matrix adjust. Identities = 175/216 (81%), Positives = 194/216 (89%) Query: 25 SVSAATVFYEPLTYFNPVTWQKADGYSNGGMFNCTWRADNISFTGGGQLRLALTSSSYNK 84 S A +VF+EPL+YFN TW+KADGYSNGG+FNCTWRA+N++FT G+L+L LTSS+YNK Sbjct: 22 SALAGSVFWEPLSYFNRSTWEKADGYSNGGVFNCTWRANNVNFTNDGKLKLGLTSSAYNK 81 Query: 85 FDGAEMRSVYKYGYGKYEVSMMPAKNSGIVSSFFTYTGPSEGTSWDEIDIEFLGKDTTKV 144 FD AE RS YGYG YEVSM PAKN+GIVSSFFTYTGP+ GT WDEIDIEFLGKDTTKV Sbjct: 82 FDCAEYRSTNIYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTKV 141 Query: 145 QFNYFTNGVGGHEKVVNLGFDASTGYHTYAFDWQPGYIKWYVDGVLKHTATSNIPSEPGK 204 QFNY+TNGVGGHEKV++LGFDAS G+HTYAFDWQPGYIKWYVDGVLKHTAT+NIPS PGK Sbjct: 142 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHTATANIPSTPGK 201 Query: 205 IMMNLWNGTGVDSWLGSYNGANPLYAYYDWLKYTGN 240 IMMNLWNGTGVD WLGSYNGANPLYA YDW+KYT N Sbjct: 202 IMMNLWNGTGVDDWLGSYNGANPLYAEYDWVKYTSN 237 >A4F264.1 A4F264_9BACL Putative endo-1,3-1,4-b-glucanases Length = 238 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 175/216 (81%), Positives = 191/216 (88%) Query: 25 SVSAATVFYEPLTYFNPVTWQKADGYSNGGMFNCTWRADNISFTGGGQLRLALTSSSYNK 84 S A VF+EPLTYFN TWQKADGYSNG MFNCTWRA+N++FT G+LRL LTSS+YNK Sbjct: 23 SAFAGYVFWEPLTYFNSSTWQKADGYSNGSMFNCTWRANNVNFTSDGKLRLGLTSSAYNK 82 Query: 85 FDGAEMRSVYKYGYGKYEVSMMPAKNSGIVSSFFTYTGPSEGTSWDEIDIEFLGKDTTKV 144 FD E R+ YGYG YEVSM PAKN+GIVSSFFTYTGPS+GT WDEIDIEFLGKDTTKV Sbjct: 83 FDCGEYRTTNSYGYGLYEVSMKPAKNTGIVSSFFTYTGPSDGTQWDEIDIEFLGKDTTKV 142 Query: 145 QFNYFTNGVGGHEKVVNLGFDASTGYHTYAFDWQPGYIKWYVDGVLKHTATSNIPSEPGK 204 QFNY+TNGVG HEK+VNLGFDAS G+HTYAFDWQPG+IKWYVDGVLKHTAT+NIP PGK Sbjct: 143 QFNYYTNGVGNHEKIVNLGFDASQGFHTYAFDWQPGHIKWYVDGVLKHTATTNIPKTPGK 202 Query: 205 IMMNLWNGTGVDSWLGSYNGANPLYAYYDWLKYTGN 240 IMMNLWNGTGVDSWLG+YNGANPLYA YDW+KYT N Sbjct: 203 IMMNLWNGTGVDSWLGAYNGANPLYAEYDWVKYTSN 238 >Q6YAT3.1 Q6YAT3_9BACI Beta-1,3-1,4-glucanase Length = 238 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 175/216 (81%), Positives = 191/216 (88%) Query: 25 SVSAATVFYEPLTYFNPVTWQKADGYSNGGMFNCTWRADNISFTGGGQLRLALTSSSYNK 84 S A VF+EPL+YFN TWQKADGYSNG MFNCTWRA+N++FT G+L+L+LTS + NK Sbjct: 23 SAFAGNVFWEPLSYFNSSTWQKADGYSNGQMFNCTWRANNVNFTNDGKLKLSLTSPANNK 82 Query: 85 FDGAEMRSVYKYGYGKYEVSMMPAKNSGIVSSFFTYTGPSEGTSWDEIDIEFLGKDTTKV 144 FD E RS YGYG YEVSM PAKN+GIVSSFFTYTGPS GT WDEIDIEFLGKDTTKV Sbjct: 83 FDCGEYRSTNNYGYGLYEVSMKPAKNTGIVSSFFTYTGPSHGTQWDEIDIEFLGKDTTKV 142 Query: 145 QFNYFTNGVGGHEKVVNLGFDASTGYHTYAFDWQPGYIKWYVDGVLKHTATSNIPSEPGK 204 QFNY+TNGVGGHEK++NLGFDAST +HTYAFDWQPGYIKWYVDGVLKHTAT+NIPS PGK Sbjct: 143 QFNYYTNGVGGHEKIINLGFDASTSFHTYAFDWQPGYIKWYVDGVLKHTATTNIPSTPGK 202 Query: 205 IMMNLWNGTGVDSWLGSYNGANPLYAYYDWLKYTGN 240 IMMNLWNGTGVDSWLGSYNGANPLYA YDW+KYT N Sbjct: 203 IMMNLWNGTGVDSWLGSYNGANPLYAEYDWVKYTSN 238 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,658,979,149 Number of extensions: 75217580 Number of successful extensions: 136819 Number of sequences better than 1.0e-05: 840 Number of HSP's gapped: 135935 Number of HSP's successfully gapped: 844 Length of query: 240 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 108 Effective length of database: 1,817,122,223 Effective search space: 196249200084 Effective search space used: 196249200084 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)