BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0290.0010.p (285 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A3DE71.1 A3DE71_CLOTH Binding-protein-dependent transport system... 304 8e-81 Q746L2.1 Q746L2_THET2 Putative sugar transport system permease A... 295 2e-78 Q53W76.1 Q53W76_THET8 Sugar ABC transporter, permease protein 295 2e-78 A9B7H9.1 A9B7H9_HERA2 Binding-protein-dependent transport system... 278 3e-73 Q8GEB5.1 Q8GEB5_THETH Putative sugar permease 269 2e-70 >A3DE71.1 A3DE71_CLOTH Binding-protein-dependent transport systems inner membrane component Length = 289 Score = 304 bits (778), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 150/288 (52%), Positives = 206/288 (71%), Gaps = 11/288 (3%) Query: 2 SIHRKRSVTSFLLTSLTWFIVVVTIFPILWMIFTSLHSNDQILNGI----TTFSLPKPQW 57 S+ RK+ + + + +VV+T+ PI++M+ TSL ++ I G T FS Sbjct: 9 SMKRKKKIKDTIANIILAILVVLTLGPIVFMVLTSLMDHNAIARGKWIAPTRFS------ 62 Query: 58 VNYVNMWDTVNFAIYFRNSLLICGATTLLAGAFAVLAGYALARFDFPGSKLFSMSIISTQ 117 NYV ++ + F IYFRNSL++C ++A A LAGY+LA++ FPGS F + I++TQ Sbjct: 63 -NYVEVFQKLPFGIYFRNSLIVCSIVMVVALVIATLAGYSLAKYKFPGSGFFGILILATQ 121 Query: 118 LIPGIMFLFPIYLMFLWIKNTFGLPMINTYWGMILVYTAFYTPISIWIMRGFFVSIPRDL 177 L+PG+MFL P+YL F+ IK G+ +IN+ G+++VY+AF+ P SIWI+RGFF SIP +L Sbjct: 122 LLPGMMFLLPLYLDFVKIKQATGIQLINSIPGLVIVYSAFFVPFSIWIIRGFFASIPGEL 181 Query: 178 EESAVIDGCSKFQAFYKIILPLSVPGIIATGIFIFLTAWDELLFAWVLTTSSDVQTIPVG 237 EE+A IDGC+KF AF +++LPL+VPGI+AT I+IFLTAWDEL+FAWVL + V TIP G Sbjct: 182 EEAARIDGCNKFTAFLRVMLPLAVPGIVATAIYIFLTAWDELIFAWVLLKDTKVTTIPAG 241 Query: 238 IRLFVGQYNTRYDLLMAASTVVTVPVMVIFFMTQKYFISGMTAGAVKG 285 IR F+ RYDLLMAA T+VT+PV+++FF QK FISGMTAGAVKG Sbjct: 242 IRGFIAYTTARYDLLMAAGTIVTIPVLIMFFTMQKKFISGMTAGAVKG 289 >Q746L2.1 Q746L2_THET2 Putative sugar transport system permease ABC transporter protein Length = 285 Score = 295 bits (756), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 145/267 (54%), Positives = 198/267 (74%), Gaps = 11/267 (4%) Query: 26 IFPILWMIFTSLHSNDQILNGITTFSLPK-PQWVNYVNMWDTVNFAIYFRNSLLICGATT 84 +FPI WM+ TSL + L T PK PQW NY+++W + F Y +NS L+C TT Sbjct: 23 LFPIFWMVNTSLMTQ---LEAATGSLFPKTPQWGNYLDIWRVLPFFHYLKNSFLVCSLTT 79 Query: 85 LLAGAFAVLAGYALARFDFPGSKLFSMSIISTQLIPGIMFLFPIYLMFL----WIKNTFG 140 + A A A AGYALARF FPG++LF S++ TQ+IPGI+FL PIY+M++ W+++ G Sbjct: 80 VFALAVATFAGYALARFRFPGAELFGGSVLVTQVIPGILFLIPIYIMYIYVQNWVRSALG 139 Query: 141 LP--MINTYWGMILVYTAFYTPISIWIMRGFFVSIPRDLEESAVIDGCSKFQAFYKIILP 198 L ++ +Y G++ YTAF+ P+SIWI+RGFF SIP++LEE+A++DG + FQAF+++ILP Sbjct: 140 LEVRLVGSYGGLVFTYTAFFVPLSIWILRGFFASIPKELEEAAMVDGATPFQAFHRVILP 199 Query: 199 LSVPGIIATGIFIFLTAWDELLFAWVLTTSSDVQTIPVGIRLFVGQYNTRYDLLMAASTV 258 L++PG+ AT ++IFLTAWDELLFA VLTT + T+PVGIR FVG Y RYDL+MAA+TV Sbjct: 200 LALPGLAATAVYIFLTAWDELLFAQVLTTEATA-TVPVGIRNFVGNYQNRYDLVMAAATV 258 Query: 259 VTVPVMVIFFMTQKYFISGMTAGAVKG 285 T+PV+V+FF Q+ I G+TAGAVKG Sbjct: 259 ATLPVLVLFFFVQRQLIQGLTAGAVKG 285 >Q53W76.1 Q53W76_THET8 Sugar ABC transporter, permease protein Length = 285 Score = 295 bits (756), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 145/267 (54%), Positives = 198/267 (74%), Gaps = 11/267 (4%) Query: 26 IFPILWMIFTSLHSNDQILNGITTFSLPK-PQWVNYVNMWDTVNFAIYFRNSLLICGATT 84 +FPI WM+ TSL + L T PK PQW NY+++W + F Y +NS L+C TT Sbjct: 23 LFPIFWMVNTSLMTQ---LEAATGSLFPKTPQWGNYLDIWRVLPFFHYLKNSFLVCSLTT 79 Query: 85 LLAGAFAVLAGYALARFDFPGSKLFSMSIISTQLIPGIMFLFPIYLMFL----WIKNTFG 140 + A A A AGYALARF FPG++LF S++ TQ+IPGI+FL PIY+M++ W+++ G Sbjct: 80 VFALAVATFAGYALARFRFPGAELFGGSVLVTQVIPGILFLIPIYIMYIYVQNWVRSALG 139 Query: 141 LP--MINTYWGMILVYTAFYTPISIWIMRGFFVSIPRDLEESAVIDGCSKFQAFYKIILP 198 L ++ +Y G++ YTAF+ P+SIWI+RGFF SIP++LEE+A++DG + FQAF+++ILP Sbjct: 140 LEVRLVGSYGGLVFTYTAFFVPLSIWILRGFFASIPKELEEAAMVDGATPFQAFHRVILP 199 Query: 199 LSVPGIIATGIFIFLTAWDELLFAWVLTTSSDVQTIPVGIRLFVGQYNTRYDLLMAASTV 258 L++PG+ AT ++IFLTAWDELLFA VLTT + T+PVGIR FVG Y RYDL+MAA+TV Sbjct: 200 LALPGLAATAVYIFLTAWDELLFAQVLTTEATA-TVPVGIRNFVGNYQNRYDLVMAAATV 258 Query: 259 VTVPVMVIFFMTQKYFISGMTAGAVKG 285 T+PV+V+FF Q+ I G+TAGAVKG Sbjct: 259 ATLPVLVLFFFVQRQLIQGLTAGAVKG 285 >A9B7H9.1 A9B7H9_HERA2 Binding-protein-dependent transport systems inner membrane component Length = 297 Score = 278 bits (712), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 138/266 (51%), Positives = 188/266 (70%), Gaps = 7/266 (2%) Query: 21 IVVVTIFPILWMIFTSLHSNDQILNGITTFSLPKPQWVNYVNMWDTVNFAIYFRNSLLIC 80 I+ + + PI++++ S S ++ G + F ++ NY MW V F YF NSL+IC Sbjct: 37 IIALMLLPIIFLVVGSFKSREEFAVG-SNFFPSDWRFENYSEMWTRVKFGTYFSNSLIIC 95 Query: 81 GATTLLAGAFAVLAGYALARFDFPGSKLFSMSIISTQLIPGIMFLFPIYLMFLWIKNTFG 140 G TTL+ A ++GYALARF FPG+ SM+I+ TQL+PG +FL P+Y+ FLW+KN G Sbjct: 96 GITTLVVTILASMSGYALARFRFPGAGGLSMAILGTQLVPGTLFLIPLYMTFLWMKNNLG 155 Query: 141 LPMINTYWGMILVYTAFYTPISIWIMRGFFVSIPRDLEESAVIDGCSKFQAFYKIILPLS 200 +P+I T +G I++Y F+ PIS+WI R FF +IP DLEE A++DG ++FQAF I++PL+ Sbjct: 156 IPLIGTNFGAIVLYVGFFLPISLWIQRSFFATIPIDLEEQAMVDGATRFQAFVYIVMPLA 215 Query: 201 VPGIIATGIFIFLTAWDELLFAWVLTTSSDVQTIPVGIRLFVG--QYNTRYDLLMAASTV 258 PG+I+T IF+FLTAWDELLFAWVL +VQTIPVGIR F G RY+LL AAS V Sbjct: 216 GPGVISTAIFVFLTAWDELLFAWVL----NVQTIPVGIRQFTGVAGSQNRYELLSAASVV 271 Query: 259 VTVPVMVIFFMTQKYFISGMTAGAVK 284 + +PV +FF+ QK FI+G+TAGAVK Sbjct: 272 IILPVAAMFFLLQKRFIAGLTAGAVK 297 >Q8GEB5.1 Q8GEB5_THETH Putative sugar permease Length = 280 Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 126/220 (57%), Positives = 172/220 (78%), Gaps = 7/220 (3%) Query: 72 YFRNSLLICGATTLLAGAFAVLAGYALARFDFPGSKLFSMSIISTQLIPGIMFLFPIYLM 131 Y +NS L+C TT+ A A A AGYALARF FPG++LF S++ TQ+IPGI+FL PIY+M Sbjct: 62 YLKNSFLVCSLTTVFALAVATFAGYALARFRFPGAELFGGSVLVTQVIPGILFLIPIYIM 121 Query: 132 FL----WIKNTFGLP--MINTYWGMILVYTAFYTPISIWIMRGFFVSIPRDLEESAVIDG 185 ++ W+++ GL ++ +Y G++ YTAF+ P+SIWI+RGFF SIP++LEE+A++DG Sbjct: 122 YIYVQNWVRSALGLEVRLVGSYGGLVFTYTAFFVPLSIWILRGFFASIPKELEEAAMVDG 181 Query: 186 CSKFQAFYKIILPLSVPGIIATGIFIFLTAWDELLFAWVLTTSSDVQTIPVGIRLFVGQY 245 + FQAF+++ILPL++PG+ AT ++IFLTAWDELLFA VLTT + T+PVGIR FVG Y Sbjct: 182 ATPFQAFHRVILPLALPGLAATAVYIFLTAWDELLFAQVLTTEATA-TVPVGIRNFVGNY 240 Query: 246 NTRYDLLMAASTVVTVPVMVIFFMTQKYFISGMTAGAVKG 285 RYDL+MAA+TV T+PV+V+FF Q+ I G+TAGAVKG Sbjct: 241 QNRYDLVMAAATVATLPVLVLFFFVQRQLIQGLTAGAVKG 280 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.332 0.143 0.455 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,630,680,878 Number of extensions: 65244367 Number of successful extensions: 265493 Number of sequences better than 1.0e-05: 7648 Number of HSP's gapped: 255410 Number of HSP's successfully gapped: 7680 Length of query: 285 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 151 Effective length of database: 1,798,280,193 Effective search space: 271540309143 Effective search space used: 271540309143 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)