BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0290.0006.p
         (72 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KFK9.1 B3KFK9_9BACI Putative uncharacterized protein                131   2e-29
B1DIW6.1 B1DIW6_9BACL Putative uncharacterized protein                118   2e-25
Q9KDE8.1 Q9KDE8_BACHD BH1265 protein                                   94   6e-18
A7Z741.1 A7Z741_BACA2 Putative uncharacterized protein                 92   1e-17
C0H462.1 C0H462_BACSU Putative uncharacterized protein yrzR            92   1e-17

>B3KFK9.1 B3KFK9_9BACI Putative uncharacterized protein
          Length = 69

 Score =  131 bits (329), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 60/69 (86%), Positives = 66/69 (95%)

Query: 4  MKCPNCNSKDIGKIGSHQFYCWGCFIELTVNGEKMSVYQVEEDGTLSSLDDLFSGEEIAQ 63
          MKCPNC+SKDIGKIGSHQFYCWGCFIELTVNGEKMSVYQVEEDGTLSSLDDLF G+++  
Sbjct: 1  MKCPNCSSKDIGKIGSHQFYCWGCFIELTVNGEKMSVYQVEEDGTLSSLDDLFFGDDMQP 60

Query: 64 DYPQIHASS 72
          D+PQ+HASS
Sbjct: 61 DFPQMHASS 69


>B1DIW6.1 B1DIW6_9BACL Putative uncharacterized protein
          Length = 65

 Score =  118 bits (295), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/60 (91%), Positives = 57/60 (95%)

Query: 4  MKCPNCNSKDIGKIGSHQFYCWGCFIELTVNGEKMSVYQVEEDGTLSSLDDLFSGEEIAQ 63
          M+CPNCNSKDIGKIGSHQFYCWGCFIELTVNGEKMSVYQVEEDGTLSSLDDLF  EE+ Q
Sbjct: 2  MRCPNCNSKDIGKIGSHQFYCWGCFIELTVNGEKMSVYQVEEDGTLSSLDDLFFEEEMPQ 61


>Q9KDE8.1 Q9KDE8_BACHD BH1265 protein
          Length = 62

 Score = 93.6 bits (231), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 39/58 (67%), Positives = 50/58 (86%)

Query: 4  MKCPNCNSKDIGKIGSHQFYCWGCFIELTVNGEKMSVYQVEEDGTLSSLDDLFSGEEI 61
          M+CPNC SKDIGKIG+HQ+YCW CF+E+T+   K+S++QVEEDGTLSSLDDLF   ++
Sbjct: 1  MQCPNCQSKDIGKIGTHQYYCWNCFVEMTLTKGKLSLHQVEEDGTLSSLDDLFEDHDL 58


>A7Z741.1 A7Z741_BACA2 Putative uncharacterized protein
          Length = 63

 Score = 92.4 bits (228), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 52/62 (83%)

Query: 4  MKCPNCNSKDIGKIGSHQFYCWGCFIELTVNGEKMSVYQVEEDGTLSSLDDLFSGEEIAQ 63
          + CPNC SKDIGKIG +Q+YCWGCFIELTV   K++ +QVEEDGTLSSLDDLFS +E + 
Sbjct: 2  LVCPNCKSKDIGKIGVNQYYCWGCFIELTVAKGKIATHQVEEDGTLSSLDDLFSEDERSI 61

Query: 64 DY 65
          ++
Sbjct: 62 NF 63


>C0H462.1 C0H462_BACSU Putative uncharacterized protein yrzR
          Length = 63

 Score = 92.4 bits (228), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 52/62 (83%)

Query: 4  MKCPNCNSKDIGKIGSHQFYCWGCFIELTVNGEKMSVYQVEEDGTLSSLDDLFSGEEIAQ 63
          + CPNC SKDIGKIG +Q+YCWGCFIELTV   K++ +QVEEDGTLSSLDDLFS +E + 
Sbjct: 2  LICPNCKSKDIGKIGVNQYYCWGCFIELTVAKGKIATHQVEEDGTLSSLDDLFSEDERSI 61

Query: 64 DY 65
          ++
Sbjct: 62 NF 63


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.135    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 432,948,065
Number of extensions: 13795085
Number of successful extensions: 31707
Number of sequences better than 1.0e-05: 109
Number of HSP's gapped: 31706
Number of HSP's successfully gapped: 109
Length of query: 72
Length of database: 3,060,696,203
Length adjustment: 43
Effective length of query: 29
Effective length of database: 2,655,592,558
Effective search space: 77012184182
Effective search space used: 77012184182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)