BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0290.0005.p (173 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KFK8.1 B3KFK8_9BACI PRC-barrel domain protein 257 3e-67 B1DIW7.1 B1DIW7_9BACL PRC-barrel domain protein 134 4e-30 C0ZAR5.1 C0ZAR5_BREBN Putative uncharacterized protein 100 5e-20 Q1IXR2.1 Q1IXR2_DEIGD PRC-barrel domain protein 92 2e-17 Q9RVX7.1 Q9RVX7_DEIRA Putative uncharacterized protein 90 9e-17 >B3KFK8.1 B3KFK8_9BACI PRC-barrel domain protein Length = 173 Score = 257 bits (657), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 122/173 (70%), Positives = 148/173 (85%) Query: 1 MKLQEMIGLAVYEVEEGNEIGKIVDILLDSNWNITGIELESKAFFSSHVKVVAWEDIVAY 60 MKLQEMIGLAV++VE G EIGKI D +LD NW ITG+ELE KA FSSHVK V+WEDIVAY Sbjct: 1 MKLQEMIGLAVFDVENGKEIGKIHDFILDENWLITGLELEGKALFSSHVKSVSWEDIVAY 60 Query: 61 GEDAVMIRSKESIVKADTDHIPYTFLLGKKKLKDLQVLTASGTILGRVSDVYFDQKLGNT 120 GEDAVMIRS+E++ K + IP T+LLGK+KLK++QVLT G +LGR+SDVYF+Q+ GNT Sbjct: 61 GEDAVMIRSQEAVRKLGANDIPLTYLLGKRKLKEMQVLTEDGVLLGRISDVYFEQEQGNT 120 Query: 121 IVALEISDGLVTDLIEGRKWLPCSEGMSIGENSVLVPAMSEERLQKAINIVNG 173 I+ LEISDG V+DLIEGRKWLPC+ M+IGE++V+VP MSE+RL+KAIN VNG Sbjct: 121 ILGLEISDGFVSDLIEGRKWLPCTAEMAIGESAVMVPPMSEQRLEKAINSVNG 173 >B1DIW7.1 B1DIW7_9BACL PRC-barrel domain protein Length = 181 Score = 134 bits (336), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 70/177 (39%), Positives = 108/177 (61%), Gaps = 5/177 (2%) Query: 1 MKLQEMIGLAVYEVEEGNEIGKIVDILLDSNWNITGIELESKAFFSSHVKVVAWEDIVAY 60 +KLQ++IGL V + G +G + D D +W + G+ +E +F++ VK V W ++++ Sbjct: 2 IKLQQLIGLPVLVIHSGKHVGFVKDAWFDEHWRLIGLIVEGAKWFATSVKTVEWAEVLSC 61 Query: 61 GEDAVMIRSKESIVKADTDHIPYTFLLGKKKLKDLQVLTASGTILGRVSDVYFDQKLGNT 120 GEDAV I + ++ + I +F G KLK+L V+T G LGRVSDVYF G Sbjct: 62 GEDAVFISRESAVKPVKSAEIGRSFETGVVKLKELPVVTVQGIQLGRVSDVYFYPFQGTQ 121 Query: 121 IVALEISDGLVTDLIEGRKWLPCSE---GMSIGENSVLVPAMSEERLQK--AINIVN 172 IV E++DG ++DL+EGRKWL E + +GE++++VPA+SE L+ A N +N Sbjct: 122 IVGYELTDGFISDLMEGRKWLKAPEDPDAVLLGEDAIIVPAVSEAELEPVAASNSIN 178 >C0ZAR5.1 C0ZAR5_BREBN Putative uncharacterized protein Length = 159 Score = 100 bits (249), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 60/160 (37%), Positives = 87/160 (54%), Gaps = 8/160 (5%) Query: 2 KLQEMIGLAVYEVEEGNEIGKIVDILLDSNWNITGIELESKAFFSSHVKVVAWEDIVAYG 61 K + +GL V ++ G IG + DIL DS W++ G+ L + +F S + A E I A G Sbjct: 3 KAMDAVGLPVVCLQTGETIGTVRDILCDSTWHVRGVLLSEQGWFQSGTYIPA-EHIHAVG 61 Query: 62 EDAVMIRSKESIVKADTDHI----PYTFLLGKKKLKDLQVLTASGTILGRVSDVYFDQKL 117 E + + K++I H+ P + GK KLK V+TASG LGR+ DVYF Sbjct: 62 ESCLTVSGKDAITP--LPHLAGLEPVGIVTGKTKLKGKAVITASGECLGRLEDVYFSANW 119 Query: 118 GNTIVALEISDGLVTDLIEGRKWLPCSEGMSIGENSVLVP 157 +V E+S+G D+ EGRK LP + IGE +++VP Sbjct: 120 -EKLVGYELSNGWFADITEGRKRLPAPASVIIGEENLIVP 158 >Q1IXR2.1 Q1IXR2_DEIGD PRC-barrel domain protein Length = 563 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 93/167 (55%), Gaps = 3/167 (1%) Query: 1 MKLQEMIGLAVYEVEEGNEIGKIVDILLDSNWN-ITGIELESKAFFSSHVKVVAWEDIVA 59 +K +E+IG + ++ G + + D++ D N + G+ ++ +F + +VV +E + A Sbjct: 2 IKGKELIGRPIVAIDSGERVETVHDLIFDHQANQVLGLLVDEGGWFRA-ARVVPFEAVRA 60 Query: 60 YGEDAVMIRSKESIVKADTDHIPYTFLLGKKKLKDLQVLTASGTILGRVSDVYFDQKLGN 119 +GEDAVMI S ++ D L K L L +LT G LG+++DVYFD++ G Sbjct: 61 FGEDAVMIDSATAVTSTREDGRLAEVLDSKVSLIGLTLLTTDGENLGKIADVYFDEQTGR 120 Query: 120 TIVALEISDGLVTDLIEGRKWLPCSEGMSIGENSVLVPAMSEERLQK 166 + E + G+ +DL GR ++P E + IGE++ +VPA +Q+ Sbjct: 121 -VEGYEATGGIFSDLSSGRTFVPAPESVQIGEDAAIVPASVAAAMQE 166 >Q9RVX7.1 Q9RVX7_DEIRA Putative uncharacterized protein Length = 501 Score = 89.7 bits (221), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 1/158 (0%) Query: 1 MKLQEMIGLAVYEVEEGNEIGKIVDILLDSNWNITGIELESKAFFSSHVKVVAWEDIVAY 60 +K +E++G V V G ++ + D++ D N L + + K V + + + Sbjct: 2 IKGKELLGRPVVAVSNGAQVDNVHDVVFDHQGNRVLALLVEEGGWLRAAKAVPFGRVQSI 61 Query: 61 GEDAVMIRSKESIVKADTDHIPYTFLLGKKKLKDLQVLTASGTILGRVSDVYFDQKLGNT 120 GE AVMI + E +V D + L GK L + +LT G LG+++DVYFD++ G Sbjct: 62 GEKAVMIATPEDVVNTGRDPVLKEALAGKTNLIGMTLLTTDGQTLGKITDVYFDERSGQ- 120 Query: 121 IVALEISDGLVTDLIEGRKWLPCSEGMSIGENSVLVPA 158 + E S GL D+ GR ++P + + IG++S +VPA Sbjct: 121 VEGYEASGGLFADMTNGRTFIPAPQSIQIGKDSAIVPA 158 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 981,961,489 Number of extensions: 37770681 Number of successful extensions: 98111 Number of sequences better than 1.0e-05: 40 Number of HSP's gapped: 98105 Number of HSP's successfully gapped: 40 Length of query: 173 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 47 Effective length of database: 1,873,648,313 Effective search space: 88061470711 Effective search space used: 88061470711 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)