BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0290.0004.p (381 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KFK7.1 B3KFK7_9BACI Aminotransferase class V 436 e-120 B1DIW8.1 B1DIW8_9BACL Aminotransferase class V 410 e-112 Q9KDF3.1 Q9KDF3_BACHD Fe-S cluster formation protein 384 e-105 A6CTE3.1 A6CTE3_9BACI Putative uncharacterized protein 376 e-102 C5D501.1 C5D501_9BACI Aminotransferase class V 375 e-102 >B3KFK7.1 B3KFK7_9BACI Aminotransferase class V Length = 359 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 212/358 (59%), Positives = 260/358 (72%) Query: 24 NMLLEQFGNASSVHTYGRSAKKMINSARDTIAGFLGCAPDEWVFTSGGTESDNLALFGAA 83 N++ Q+GNASSVH +GR AKK++N ARD IA LGC DE VFT+GGTESDNLA+ G Sbjct: 2 NVMTSQYGNASSVHAFGREAKKIVNGARDRIASLLGCHSDELVFTAGGTESDNLAVLGLL 61 Query: 84 SASAHKGKHIITTAVEHHAVLHTCEALEKQGFSVTYLPVNTEGRVSAADVEAALREDTVL 143 + +G+H+IT+AVEHHAVLHTC LE++G VTY+PV+ GRVS D+ A++++T L Sbjct: 62 ESLGAEGRHVITSAVEHHAVLHTCHELERRGCQVTYVPVDPTGRVSVEDIAGAIQDNTAL 121 Query: 144 ISVMFANNEVGTVEPIQEIGRLAAERGILFHVDAVQVLGLLSIALRELPVDYMSFTAHKI 203 +++M+ NNEVGTV+PI EIG L RGI+FH DAVQ LG +I RELPVD SF+AHKI Sbjct: 122 VTIMYGNNEVGTVQPIAEIGELCRSRGIVFHTDAVQALGSEAINCRELPVDMWSFSAHKI 181 Query: 204 NGPQGIGGLYVRRGAPLQPRQHGGLQERGRRAGTESLAGAAGFAKAVELAVTGLEQRREK 263 NGPQG+G L VRRG + PR GGLQE+ RRAGTE++AG AGFA AVE V +E R + Sbjct: 182 NGPQGVGALVVRRGLSVSPRLFGGLQEKKRRAGTENMAGIAGFAAAVEWTVQNMETRIQH 241 Query: 264 ALTLRTVLLQELDRRIGRESYVINGDKQHFLPGILNLSFPGVSTDVMLMNLDMEXXXXXX 323 LR+ LL L + IG S+VING+ +H LP ILNLSFPG +T+ MLMNLDME Sbjct: 242 YRELRSTLLDGLRQEIGENSFVINGNPEHHLPHILNLSFPGANTETMLMNLDMEGIAAAS 301 Query: 324 XXXXXXXXLEISHVLRAMKLPDELLNSAIRFSTGMGNTNEEMEYVAQKVETILKRLRK 381 LEISHVL AMKL D +L SAIRFS G+GNT +EMEY AQK+ TIL RLRK Sbjct: 302 GSACTSGSLEISHVLLAMKLSDPVLRSAIRFSFGLGNTTQEMEYTAQKIGTILNRLRK 359 >B1DIW8.1 B1DIW8_9BACL Aminotransferase class V Length = 385 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 211/382 (55%), Positives = 269/382 (70%), Gaps = 2/382 (0%) Query: 1 MKPIYLDHAASTPVHPEVAKVMYNMLLEQFGNASSVHTYGRSAKKMINSARDTIAGFLGC 60 M+ Y DHAA+TP+HP+VA M ++ GN SS+H +GR+AK+ +N ARD IA LGC Sbjct: 1 MQKYYFDHAATTPMHPDVAAAMLEVMTGAGGNPSSMHAFGRAAKQRVNRARDLIAAALGC 60 Query: 61 APDEWVFTSGGTESDNLALFGAASASAHKGK-HIITTAVEHHAVLHTCEALEKQGFSVTY 119 P E +FTSGGTESDN A+ GAA+A KGK HIIT++ EHHAVLHTCEAL + G+ VTY Sbjct: 61 KPSELIFTSGGTESDNAAIIGAAAAMRTKGKTHIITSSAEHHAVLHTCEALAEAGYEVTY 120 Query: 120 LPVNTEGRVSAADVEAALREDTVLISVMFANNEVGTVEPIQEIGRLAAERGILFHVDAVQ 179 LPV+ GRVS +++ AA+R T LIS+M NNE+GT++PI+EIG LA GILFHVDAVQ Sbjct: 121 LPVDQTGRVSVSEIAAAIRPTTGLISIMHGNNEIGTLQPIEEIGELAHAHGILFHVDAVQ 180 Query: 180 VLGLLSIALRELPVDYMSFTAHKINGPQGIGGLYVRRGAPLQPRQHGGLQERGRRAGTES 239 G + L ELPVD MSF+AHKINGPQG+G LY+ G P +P HGG QER RR GTE+ Sbjct: 181 SFGTAAYRLSELPVDLMSFSAHKINGPQGVGALYLANGTPFEPIVHGGSQERKRRPGTEN 240 Query: 240 LAGAAGFAKAVELAVTGLEQRREKALTLRTVLLQELDRRI-GRESYVINGDKQHFLPGIL 298 +AG GFAKAVE+ V L ++ LRT + +L+ + G VING+ +H LP I+ Sbjct: 241 VAGITGFAKAVEICVNDLGNKKLFLDKLRTEWVDKLNAELSGITEIVINGNAEHHLPNIV 300 Query: 299 NLSFPGVSTDVMLMNLDMEXXXXXXXXXXXXXXLEISHVLRAMKLPDELLNSAIRFSTGM 358 N+SF G+ T+ MLMNLDME LE SHVL+AM L +E LNSA+RFS G+ Sbjct: 301 NISFIGIDTETMLMNLDMEGIAAASGSACTSGSLERSHVLKAMNLREERLNSAVRFSFGL 360 Query: 359 GNTNEEMEYVAQKVETILKRLR 380 GNT EE+E A+K+ TI++R+R Sbjct: 361 GNTVEELEDAARKIATIVERIR 382 >Q9KDF3.1 Q9KDF3_BACHD Fe-S cluster formation protein Length = 386 Score = 384 bits (986), Expect = e-105, Method: Compositional matrix adjust. Identities = 190/381 (49%), Positives = 254/381 (66%), Gaps = 3/381 (0%) Query: 1 MKPIYLDHAASTPVHPEVAKVMYNMLLEQFGNASSVHTYGRSAKKMINSARDTIAGFLGC 60 M+PIYLDHAA++PVHPEV + M EQFGN SS+H +GR A++ ++ AR TIA L Sbjct: 1 MEPIYLDHAATSPVHPEVIQAMLPYYEEQFGNPSSIHQFGRRARQGVDEARGTIARLLQA 60 Query: 61 APDEWVFTSGGTESDNLALFGAASASAHKGKHIITTAVEHHAVLHTCEALEKQGFSVTYL 120 P E++FTSGGTE+DNLA+FG A KG HIIT+ VEHHAVLH C+ LE QGF VTY+ Sbjct: 61 DPSEFIFTSGGTEADNLAIFGYAYQHRGKGNHIITSQVEHHAVLHACQELEHQGFEVTYV 120 Query: 121 PVNTEGRVSAADVEAALREDTVLISVMFANNEVGTVEPIQEIGRLAAERGILFHVDAVQV 180 PV+ GRVS DV ALR+DT+L+++M+ NNEVGT++PI EIG L + + H DAVQ Sbjct: 121 PVDQTGRVSVEDVRQALRDDTILVTLMYGNNEVGTIQPIAEIGALLQDHQAVLHTDAVQA 180 Query: 181 LGLLSIALRELPVDYMSFTAHKINGPQGIGGLYVRRGAPLQPRQHGGLQERGRRAGTESL 240 G +SI L LPVD +S +AHKINGP+G+G LYVR G L+P +GG QER +RAGTE++ Sbjct: 181 FGAISIELDHLPVDMLSVSAHKINGPKGVGLLYVRDGIVLKPALYGGEQERKKRAGTENV 240 Query: 241 AGAAGFAKAVELAVTGLEQRREKALTLRTVLLQELDRRIGRESYVINGDKQHFLPGILNL 300 A GFAKAVE+A+ E+R++ + + +V+NG + LP I N+ Sbjct: 241 AAIIGFAKAVEIAIANREERQKAYFDYCQTFFDQFQQE--GVQFVMNGHQTWRLPHIFNV 298 Query: 301 SFPGVSTDVMLMNLDMEXXXXXXXXXXXXXXLEISHVLRAMKLPD-ELLNSAIRFSTGMG 359 SFPGV + +L+NLD+ +E SHVL AM D EL+ S +RFS G+G Sbjct: 299 SFPGVHVEALLVNLDLAGIAASSGSACTAGSIEPSHVLVAMHGSDSELVTSGVRFSFGLG 358 Query: 360 NTNEEMEYVAQKVETILKRLR 380 NT E +++ A++ I+KRL+ Sbjct: 359 NTKEHVQWAAKETAKIVKRLQ 379 >A6CTE3.1 A6CTE3_9BACI Putative uncharacterized protein Length = 380 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 190/382 (49%), Positives = 255/382 (66%), Gaps = 3/382 (0%) Query: 1 MKPIYLDHAASTPVHPEVAKVMYNMLLEQFGNASSVHTYGRSAKKMINSARDTIAGFLGC 60 M+ IYLD+AA++P+ P V +VM + FGN SS+H+ GR A++ ++SAR T A +G Sbjct: 1 MRTIYLDNAATSPMDPRVIEVMTEAMKGTFGNPSSIHSSGRDARQKLDSARMTAAKSVGA 60 Query: 61 APDEWVFTSGGTESDNLALFGAASASAHKGKHIITTAVEHHAVLHTCEALEKQGFSVTYL 120 E +FTSGGTE+DNLAL G A A KG+HIITT++EHHAVLHTC LEK+GF VTYL Sbjct: 61 GFHEIIFTSGGTEADNLALSGTAHALKEKGRHIITTSIEHHAVLHTCAQLEKEGFEVTYL 120 Query: 121 PVNTEGRVSAADVEAALREDTVLISVMFANNEVGTVEPIQEIGRLAAERGILFHVDAVQV 180 PVN +G VS DVEAALREDT+L+S+M+ NNEVGT++PI EIG L RGIL H DAVQ Sbjct: 121 PVNGQGLVSVKDVEAALREDTILVSIMYGNNEVGTIQPISEIGELVRNRGILLHTDAVQA 180 Query: 181 LGLLSIALRELPVDYMSFTAHKINGPQGIGGLYVRRGAPLQPRQHGGLQERGRRAGTESL 240 G+ I + +D +S ++HKINGP+G+G LY R+ PL+ + GG QER RRAGTE+L Sbjct: 181 FGMTKIDVETENIDLLSISSHKINGPKGVGFLYARKEVPLEAKMFGGEQERKRRAGTENL 240 Query: 241 AGAAGFAKAVELAVTGLEQRREKALTLRTVLLQELDRRIGRESYVINGDKQHFLPGILNL 300 G A+A+ L+ ++++ E+ + + L++ L + +NGD QH LP ILNL Sbjct: 241 PSLVGMAEAIRLSQQEMDKKIEEYIEFKNTLIETLKEE--DIEFYLNGDLQHSLPHILNL 298 Query: 301 SFPGVSTDVMLMNLDMEXXXXXXXXXXXXXXLEISHVLRAMKLPD-ELLNSAIRFSTGMG 359 SFPG + ML+NLD+ +E SHVL AM D E L ++IRFS G+ Sbjct: 299 SFPGTDVESMLVNLDLAGVAVSSGSACTAGSIEPSHVLLAMFGKDSERLRNSIRFSFGIT 358 Query: 360 NTNEEMEYVAQKVETILKRLRK 381 NT E++ Y A++V I+ RLRK Sbjct: 359 NTKEDIIYTAKEVAKIVNRLRK 380 >C5D501.1 C5D501_9BACI Aminotransferase class V Length = 381 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 185/380 (48%), Positives = 256/380 (67%), Gaps = 3/380 (0%) Query: 1 MKPIYLDHAASTPVHPEVAKVMYNMLLEQFGNASSVHTYGRSAKKMINSARDTIAGFLGC 60 M IYLDHAA++PVHP+V + M + E FGN SS+H +GR +++ ++ AR +A +G Sbjct: 1 MDRIYLDHAATSPVHPDVVERMIPFMTEVFGNPSSIHYFGRQSRQAVDEARTVVAKSIGA 60 Query: 61 APDEWVFTSGGTESDNLALFGAASASAHKGKHIITTAVEHHAVLHTCEALEKQGFSVTYL 120 E +FTSGGTE+DN+AL G A A+ H+G+HIITT +EHHAVL CE LEKQGF VTYL Sbjct: 61 KESEIIFTSGGTEADNIALIGTAMANRHRGRHIITTMIEHHAVLRACEYLEKQGFEVTYL 120 Query: 121 PVNTEGRVSAADVEAALREDTVLISVMFANNEVGTVEPIQEIGRLAAERGILFHVDAVQV 180 PV+ +G VS ADV+AALR+DT+L+S+MFANNEVG ++PI EIG L + FH DAVQ Sbjct: 121 PVDEKGNVSLADVKAALRDDTILVSIMFANNEVGVLQPIGEIGELLKDHQAYFHTDAVQA 180 Query: 181 LGLLSIALRELPVDYMSFTAHKINGPQGIGGLYVRRGAPLQPRQHGGLQERGRRAGTESL 240 GL+ I + + +D +S ++HKINGP+GIG LYVR L P +GG QER RRAGTE++ Sbjct: 181 YGLVPIDVNDYHIDLLSVSSHKINGPKGIGALYVRETVKLSPLFYGGEQERKRRAGTENV 240 Query: 241 AGAAGFAKAVELAVTGLEQRREKALTLRTVLLQELDRRIGRESYVINGDKQHFLPGILNL 300 AG GFAKAVE+A + ++++ ++R +L SY +NG++ H LP I+N+ Sbjct: 241 AGIVGFAKAVEIAQETMNHKQQEYRSMREAMLSIFAE--SGISYYVNGNQDHCLPHIVNV 298 Query: 301 SFPGVSTDVMLMNLDMEXXXXXXXXXXXXXXLEISHVLRAM-KLPDELLNSAIRFSTGMG 359 +FPG + + ML+NLD+ ++ SHVL AM E + S++RFS G+G Sbjct: 299 AFPGTNVESMLVNLDLAGIAASSGSACTAGSIDPSHVLVAMFGKESERIRSSVRFSFGLG 358 Query: 360 NTNEEMEYVAQKVETILKRL 379 NT E++E A + I+KRL Sbjct: 359 NTKEQIERAASETVKIVKRL 378 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,023,888,625 Number of extensions: 76430046 Number of successful extensions: 223338 Number of sequences better than 1.0e-05: 4639 Number of HSP's gapped: 213559 Number of HSP's successfully gapped: 4650 Length of query: 381 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 244 Effective length of database: 1,770,017,148 Effective search space: 431884184112 Effective search space used: 431884184112 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)