BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0290.0003.p (159 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1HRS2.1 B1HRS2_LYSSC Putative uncharacterized protein 196 7e-49 A3I5H6.1 A3I5H6_9BACI Putative uncharacterized protein 195 1e-48 B7HXJ7.1 B7HXJ7_BACC7 Putative uncharacterized protein 187 3e-46 C2S6B6.1 C2S6B6_BACCE Putative uncharacterized protein 187 3e-46 Q9RMY5.1 Q9RMY5_BACAN PXO2-47 187 4e-46 >B1HRS2.1 B1HRS2_LYSSC Putative uncharacterized protein Length = 147 Score = 196 bits (497), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 93/147 (63%), Positives = 117/147 (79%) Query: 1 MIIVSSCLAGMKVRYNSTDCLDETIHQLLDNNRAVAVCPELLGEFSTPREPAEIVGGDGG 60 MI++S+CLAG+ VRYN T+CLD+++ +L+ +AV VCPEL+G FSTPREPAEIVGG+G Sbjct: 1 MILISACLAGLNVRYNGTNCLDDSVQKLVLEKKAVTVCPELMGGFSTPREPAEIVGGNGE 60 Query: 61 AVLDGTAKVMDRLGNDVSEMYILGAYKALEQARNAGASIVVLKENSPSCGSSMIYNGAFA 120 VLDG A V++R G DV+E+Y+ GAY L++A GA+ VVLKENSPSCGS+ IYNG F Sbjct: 61 DVLDGKATVIERSGRDVTELYLKGAYATLQKALEVGATQVVLKENSPSCGSAAIYNGEFN 120 Query: 121 GQKIPGEGVTAALLRRNGIEVISEEQL 147 G KI GEGVT ALLRRN I V+SEE + Sbjct: 121 GTKIVGEGVTTALLRRNNIVVLSEENI 147 >A3I5H6.1 A3I5H6_9BACI Putative uncharacterized protein Length = 147 Score = 195 bits (495), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 92/147 (62%), Positives = 117/147 (79%) Query: 1 MIIVSSCLAGMKVRYNSTDCLDETIHQLLDNNRAVAVCPELLGEFSTPREPAEIVGGDGG 60 MI++S+CLAG+ VRYNST+C+D+ + +L+ +A+ VCPEL+G FSTPREPAEIVGG+G Sbjct: 1 MILISACLAGLNVRYNSTNCIDDRLQKLVLEKKAITVCPELMGGFSTPREPAEIVGGNGD 60 Query: 61 AVLDGTAKVMDRLGNDVSEMYILGAYKALEQARNAGASIVVLKENSPSCGSSMIYNGAFA 120 VLDG A V++R G DV+E+Y+ GAY L++A GA+ VVLKENSPSCGS+ IYNG F Sbjct: 61 DVLDGKATVIERSGRDVTELYMKGAYATLQKALEVGATQVVLKENSPSCGSAAIYNGEFN 120 Query: 121 GQKIPGEGVTAALLRRNGIEVISEEQL 147 G KI GEGVT ALLRRN I V+SEE + Sbjct: 121 GTKIVGEGVTTALLRRNNIVVLSEEDI 147 >B7HXJ7.1 B7HXJ7_BACC7 Putative uncharacterized protein Length = 154 Score = 187 bits (474), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 94/147 (63%), Positives = 112/147 (76%) Query: 1 MIIVSSCLAGMKVRYNSTDCLDETIHQLLDNNRAVAVCPELLGEFSTPREPAEIVGGDGG 60 MI+VSSCLAG VRYN T CL++TI +L+D +A+ VCPELLG F TPREPAEI+GGDG Sbjct: 1 MILVSSCLAGKPVRYNGTACLNDTIQKLIDEKKAIPVCPELLGGFVTPREPAEILGGDGY 60 Query: 61 AVLDGTAKVMDRLGNDVSEMYILGAYKALEQARNAGASIVVLKENSPSCGSSMIYNGAFA 120 VL+G AKVM+R GNDV+E+YI GA K L A+ AS VVLKE SPSCGS IY+G F Sbjct: 61 DVLEGKAKVMERSGNDVTELYINGAMKTLNLAQEMQASHVVLKEYSPSCGSKEIYSGEFV 120 Query: 121 GQKIPGEGVTAALLRRNGIEVISEEQL 147 G+K+ G GVT ALL GI+VISE +L Sbjct: 121 GKKVTGVGVTTALLESKGIKVISELEL 147 >C2S6B6.1 C2S6B6_BACCE Putative uncharacterized protein Length = 154 Score = 187 bits (474), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 94/147 (63%), Positives = 112/147 (76%) Query: 1 MIIVSSCLAGMKVRYNSTDCLDETIHQLLDNNRAVAVCPELLGEFSTPREPAEIVGGDGG 60 MI+VSSCLAG VRYN T CL++TI +L+D +A+ VCPELLG F TPREPAEI+GGDG Sbjct: 1 MILVSSCLAGKPVRYNGTACLNDTIQKLIDEKKAIPVCPELLGGFVTPREPAEILGGDGY 60 Query: 61 AVLDGTAKVMDRLGNDVSEMYILGAYKALEQARNAGASIVVLKENSPSCGSSMIYNGAFA 120 VL+G AKVM+R GNDV+E+YI GA K L A+ AS VVLKE SPSCGS IY+G F Sbjct: 61 DVLEGKAKVMERSGNDVTELYINGAMKTLNLAQEMQASHVVLKEYSPSCGSKEIYSGEFV 120 Query: 121 GQKIPGEGVTAALLRRNGIEVISEEQL 147 G+K+ G GVT ALL GI+VISE +L Sbjct: 121 GKKVTGVGVTTALLESKGIKVISELEL 147 >Q9RMY5.1 Q9RMY5_BACAN PXO2-47 Length = 154 Score = 187 bits (474), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 94/147 (63%), Positives = 112/147 (76%) Query: 1 MIIVSSCLAGMKVRYNSTDCLDETIHQLLDNNRAVAVCPELLGEFSTPREPAEIVGGDGG 60 MI+VSSCLAG VRYN T CL++TI +L+D +A+ VCPELLG F TPREPAEI+GGDG Sbjct: 1 MILVSSCLAGKPVRYNGTACLNDTIQKLIDEKKAIPVCPELLGGFVTPREPAEILGGDGY 60 Query: 61 AVLDGTAKVMDRLGNDVSEMYILGAYKALEQARNAGASIVVLKENSPSCGSSMIYNGAFA 120 VL+G AKVM+R GNDV+E+YI GA K L A+ AS VVLKE SPSCGS IY+G F Sbjct: 61 DVLEGKAKVMERSGNDVTELYINGAMKTLNLAQEMQASHVVLKEYSPSCGSKEIYSGEFV 120 Query: 121 GQKIPGEGVTAALLRRNGIEVISEEQL 147 G+K+ G GVT ALL GI+VISE +L Sbjct: 121 GKKVTGVGVTTALLESKGIKVISELEL 147 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.135 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 948,932,089 Number of extensions: 39499754 Number of successful extensions: 105754 Number of sequences better than 1.0e-05: 406 Number of HSP's gapped: 105521 Number of HSP's successfully gapped: 406 Length of query: 159 Length of database: 3,060,696,203 Length adjustment: 120 Effective length of query: 39 Effective length of database: 1,930,174,403 Effective search space: 75276801717 Effective search space used: 75276801717 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 125 (52.8 bits)