BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0290.0002.p (227 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DGZ3.1 B1DGZ3_9BACL Putative uncharacterized protein 273 6e-72 B3KJ44.1 B3KJ44_9BACI Putative uncharacterized protein 259 2e-67 O64131.1 YOQW_BPSPC UPF0361 protein yoqW 247 6e-64 O31916.1 YOQW_BACSU UPF0361 protein yoqW 247 6e-64 Q65MZ3.1 Q65MZ3_BACLD YoqW 245 2e-63 >B1DGZ3.1 B1DGZ3_9BACL Putative uncharacterized protein Length = 232 Score = 273 bits (699), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 127/221 (57%), Positives = 166/221 (75%), Gaps = 1/221 (0%) Query: 1 MCGRYTITVSMEELMLWYLIEDTTIVHYAPKYNAAPMQSIPAVIHDGKQNRLGKLRWGLV 60 MCGRYTITVS+EELM+ Y+I +T + ++ PKYN AP Q + A+I+DG++NRLG+L+WGLV Sbjct: 1 MCGRYTITVSLEELMIRYMIGETKVPYHRPKYNVAPGQQVLAIINDGQRNRLGELQWGLV 60 Query: 61 PSWAKEDKIGSKMINARSESLQDKPAFRNLISTRRCIIPADGFYEWKQQNGRKQPMRITL 120 P WA + KIG+KM+NARSE+ DKPAF+ + +RC+IPADGFYEWK+ +G KQPMRI Sbjct: 61 PPWADDPKIGNKMLNARSETAADKPAFKTPLRRKRCLIPADGFYEWKKTDGGKQPMRIVR 120 Query: 121 KSGELFSMAGLYDIWMDASG-NRLSTCTIITTGANSLMADIHDRMPVILSREAESEWLDR 179 K +FSMAGLY+ W+ G +STCTI+TT N LMA IHDRMPVIL E E WLDR Sbjct: 121 KDRSVFSMAGLYESWLAPDGTTTISTCTIMTTSPNELMAPIHDRMPVILRPEDEPFWLDR 180 Query: 180 NNRQVPDLMKLLQPYSADQMRAYPVSSAVGTVRNDAKELVD 220 + L +L PY+A+++ AYPVS AVG+V+ND E ++ Sbjct: 181 TVQDPQALQRLFLPYAAEELEAYPVSPAVGSVKNDTAECIE 221 >B3KJ44.1 B3KJ44_9BACI Putative uncharacterized protein Length = 235 Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 122/235 (51%), Positives = 166/235 (70%), Gaps = 10/235 (4%) Query: 1 MCGRYTITVSMEELMLWYLIEDTTIVHY-APKYNAAPMQSIPAVIHDGKQNRLGKLRWGL 59 MCGR+T+TV+ EELM YLI+ ++ + P+YN AP Q + A+IHDG NR+G+L+WGL Sbjct: 1 MCGRFTLTVTWEELMTRYLIDPESVSPFHVPRYNIAPTQMVTAIIHDGSTNRIGQLQWGL 60 Query: 60 VPSWAKEDKIGSKMINARSESLQDKPAFRNLISTRRCIIPADGFYEWKQQNGRKQPMRIT 119 VPSWAK+ G+KMINARSE+L+DKPA+R +RC+IPADGFYEW++ KQP RI Sbjct: 61 VPSWAKDSSGGAKMINARSETLEDKPAYRMPFYRKRCLIPADGFYEWQKSGNGKQPFRIG 120 Query: 120 LKSGELFSMAGLYDIWMDASGNRLSTCTIITTGANSLMADIHDRMPVILSREAESEWLDR 179 LK+GE+FSMAGLYD W+ G +LSTCT+ITT N LM IH+RMPVIL E+ WL+R Sbjct: 121 LKNGEIFSMAGLYDTWITPGGEKLSTCTVITTEPNRLMEPIHNRMPVILRPADEALWLER 180 Query: 180 ---------NNRQVPDLMKLLQPYSADQMRAYPVSSAVGTVRNDAKELVDEVKES 225 + + L +LL+PY A++M+A PVS+ V +V+ND ++ + + S Sbjct: 181 QPSSHTHGNHPSHLQSLKELLRPYPAEEMQAVPVSTTVNSVKNDTEDCIRSITGS 235 >O64131.1 YOQW_BPSPC UPF0361 protein yoqW Length = 224 Score = 247 bits (630), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 120/222 (54%), Positives = 154/222 (69%), Gaps = 2/222 (0%) Query: 1 MCGRYTITVSMEELMLWYLIEDTTIV-HYAPKYNAAPMQSIPAVIHDGKQNRLGKLRWGL 59 MCGR+T+ ++++ + I+ Y P YN AP Q+I +I+DG NRLGKLRWGL Sbjct: 1 MCGRFTLFSEFDDIIEQFNIDQFLPEGEYHPSYNVAPSQNILTIINDGSNNRLGKLRWGL 60 Query: 60 VPSWAKEDKIGSKMINARSESLQDKPAFRNLISTRRCIIPADGFYEWKQQNGR-KQPMRI 118 +P WAK++KIG KMINAR+E+L +KP+FR + ++RCIIPAD FYEWK+ + + K PMRI Sbjct: 61 IPPWAKDEKIGYKMINARAETLSEKPSFRKPLVSKRCIIPADSFYEWKRLDPKTKIPMRI 120 Query: 119 TLKSGELFSMAGLYDIWMDASGNRLSTCTIITTGANSLMADIHDRMPVILSREAESEWLD 178 LKS LF+ AGLY+ W GN L TCTIITT N LM DIHDRMPVIL+ E E EWL+ Sbjct: 121 KLKSSNLFAFAGLYEKWNTPEGNPLYTCTIITTKPNELMEDIHDRMPVILTDENEKEWLN 180 Query: 179 RNNRQVPDLMKLLQPYSADQMRAYPVSSAVGTVRNDAKELVD 220 N L LLQPY AD M AY VSS V + +N++ EL++ Sbjct: 181 PKNTDPDYLQSLLQPYDADDMEAYQVSSLVNSPKNNSPELIE 222 >O31916.1 YOQW_BACSU UPF0361 protein yoqW Length = 224 Score = 247 bits (630), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 120/222 (54%), Positives = 154/222 (69%), Gaps = 2/222 (0%) Query: 1 MCGRYTITVSMEELMLWYLIEDTTIV-HYAPKYNAAPMQSIPAVIHDGKQNRLGKLRWGL 59 MCGR+T+ ++++ + I+ Y P YN AP Q+I +I+DG NRLGKLRWGL Sbjct: 1 MCGRFTLFSEFDDIIEQFNIDQFLPEGEYHPSYNVAPSQNILTIINDGSNNRLGKLRWGL 60 Query: 60 VPSWAKEDKIGSKMINARSESLQDKPAFRNLISTRRCIIPADGFYEWKQQNGR-KQPMRI 118 +P WAK++KIG KMINAR+E+L +KP+FR + ++RCIIPAD FYEWK+ + + K PMRI Sbjct: 61 IPPWAKDEKIGYKMINARAETLSEKPSFRKPLVSKRCIIPADSFYEWKRLDPKTKIPMRI 120 Query: 119 TLKSGELFSMAGLYDIWMDASGNRLSTCTIITTGANSLMADIHDRMPVILSREAESEWLD 178 LKS LF+ AGLY+ W GN L TCTIITT N LM DIHDRMPVIL+ E E EWL+ Sbjct: 121 KLKSSNLFAFAGLYEKWNTPEGNPLYTCTIITTKPNELMEDIHDRMPVILTDENEKEWLN 180 Query: 179 RNNRQVPDLMKLLQPYSADQMRAYPVSSAVGTVRNDAKELVD 220 N L LLQPY AD M AY VSS V + +N++ EL++ Sbjct: 181 PKNTDPDYLQSLLQPYDADDMEAYQVSSLVNSPKNNSPELIE 222 >Q65MZ3.1 Q65MZ3_BACLD YoqW Length = 224 Score = 245 bits (626), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 114/220 (51%), Positives = 157/220 (71%), Gaps = 1/220 (0%) Query: 1 MCGRYTITVSMEELMLWYLIEDTTIVHYAPKYNAAPMQSIPAVIHDGKQNRLGKLRWGLV 60 MCGR+T+ +E++ + I+ I Y+P YN AP Q I AVI+DG NRLG+LRWGL+ Sbjct: 1 MCGRFTLFSEFDEIIDRFEIDQMAIEDYSPSYNIAPSQYILAVINDGSHNRLGRLRWGLI 60 Query: 61 PSWAKEDKIGSKMINARSESLQDKPAFRNLISTRRCIIPADGFYEWKQQNGR-KQPMRIT 119 P W+K++KIG KMINAR+E+L +KP+FR + +RC+IPAD FYEWK+ + + K+PMRI Sbjct: 61 PPWSKDEKIGYKMINARAETLAEKPSFRKPLIRQRCLIPADSFYEWKRTDAKTKRPMRIK 120 Query: 120 LKSGELFSMAGLYDIWMDASGNRLSTCTIITTGANSLMADIHDRMPVILSREAESEWLDR 179 LK+ LFS AGL++ W A G + TCTIITT N LM DIHDRMPVIL R+AE EWL+ Sbjct: 121 LKTNRLFSFAGLWEKWQPAGGKPVYTCTIITTTPNDLMKDIHDRMPVILDRQAEKEWLNP 180 Query: 180 NNRQVPDLMKLLQPYSADQMRAYPVSSAVGTVRNDAKELV 219 N+ + L LL+PY++ +M AY V+ V + +++ EL+ Sbjct: 181 KNQNLAYLESLLKPYASKEMEAYEVAPLVNSPHHNSPELI 220 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.132 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,351,154,338 Number of extensions: 53348991 Number of successful extensions: 107343 Number of sequences better than 1.0e-05: 749 Number of HSP's gapped: 105822 Number of HSP's successfully gapped: 750 Length of query: 227 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 96 Effective length of database: 1,826,543,238 Effective search space: 175348150848 Effective search space used: 175348150848 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)