BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0286.0004.p (339 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K775.1 B3K775_9BACI Sensor protein EC=2.7.13.3 292 3e-77 Q44930.1 GTCS_ANEMI Sensor protein gtcS EC=2.7.13.3 281 6e-74 C3HA85.1 C3HA85_BACTU Putative uncharacterized protein 270 2e-70 B5UX80.1 B5UX80_BACCE Sensor protein EC=2.7.13.3 269 3e-70 Q3EQF5.1 Q3EQF5_BACTI Sensor protein EC=2.7.13.3 268 4e-70 >B3K775.1 B3K775_9BACI Sensor protein EC=2.7.13.3 Length = 386 Score = 292 bits (748), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 145/297 (48%), Positives = 204/297 (68%), Gaps = 4/297 (1%) Query: 29 FGMSIYIFSQLMVKRITRPLEQIAEAIERMGKGEYKERLSITADYEFSVIQHRFNEMAES 88 F +++Y F + R+T PL IA+ I + +G+Y++RL+ A YE + IQ FN+MAE Sbjct: 90 FAITVYAFGRRTASRLTTPLSSIADGIRNIAQGQYRKRLNFKASYELAQIQDDFNDMAER 149 Query: 89 LEQAERENRRLQDSKQRMLADLSHDLKTPVTTIQGYAKALQLGLVDSEEKKERYLQLIYN 148 LE+ ERE + L++SKQRML D+SHDLKTP+TTI+GY +AL+ GLVD+EE++ + L+LI + Sbjct: 150 LERMEREKQELEESKQRMLIDISHDLKTPLTTIRGYIEALEAGLVDTEERRRQVLRLISD 209 Query: 149 KATVVTALIDDLFRLSKLERPDHPISVERGDLAELLREIAADYYDAMEDKGMVMELDIPS 208 KA++++ LIDD+F LSKL+ PD P SVE D+ E REIAA+YY+ EDK + DIP+ Sbjct: 210 KASLMSELIDDIFDLSKLDSPDVPFSVEFSDITEFTREIAAEYYEVFEDKQLDFRYDIPN 269 Query: 209 GEVMAGYXXXXDPGLMRRAIANLLSNAVQHNSGGTVVLIALEELAEDVRIRVQDNGGGIS 268 E+ + + RA++N+LSNA ++N GT V + L V I V D+G GI Sbjct: 270 RELRVPFNAI----WLYRAVSNMLSNAWKYNPPGTTVELKLVTAENGVEIHVSDDGAGIP 325 Query: 269 DELKEVIFDPFVRGDAARPGDGGTGLGLAISKQILELHRGKLKLDNRNGLTVFELVV 325 D+LK+ +F+ FVRGD AR DGGTGLGLAI+KQ+ E H GK++L NG T F L + Sbjct: 326 DDLKDKVFEAFVRGDRARTSDGGTGLGLAIAKQVAEKHGGKIRLTTTNGQTSFILFL 382 >Q44930.1 GTCS_ANEMI Sensor protein gtcS EC=2.7.13.3 Length = 370 Score = 281 bits (719), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 139/277 (50%), Positives = 190/277 (68%), Gaps = 5/277 (1%) Query: 29 FGMSIYIFSQLMVKRITRPLEQIAEAIERMGKGEYKERLSITADYEFSVIQHRFNEMAES 88 F +S+Y++S+ KRIT PLE+I +AI++M +GE+ +RL ADYE ++IQ FNEM Sbjct: 53 FALSVYLYSRWTSKRITGPLEKITDAIQKMREGEFAQRLCFKADYELTLIQEHFNEMVAH 112 Query: 89 LEQAERENRRLQDSKQRMLADLSHDLKTPVTTIQGYAKALQLGLVDSEEKKERYLQLIYN 148 LE+ E E +L+ SKQRML DLSHD KTP+TTIQGYA ALQ+G+VDS EK+ RYL++IYN Sbjct: 113 LEKTEAEKNKLEQSKQRMLLDLSHDFKTPITTIQGYAMALQMGVVDSPEKQRRYLEMIYN 172 Query: 149 KATVVTALIDDLFRLSKLERPDHPISVERGDLAELLREIAADYYDAMEDKGMVMELDIPS 208 K+ +VTAL++D+F+L+ L+ PD P + E G EIA Y+D E ++L IP+ Sbjct: 173 KSIIVTALVEDMFQLATLDSPDLPSAEEHGRFGRTGSEIAIAYFDQFEQNKFSLDLKIPT 232 Query: 209 GEVMAGYXXXXDPGLMRRAIANLLSNAVQHNSGGTVVLIALEELAEDVRIRVQDNGGGIS 268 VM + L+ RA++NLLSN ++HN GT V ++L + E + + V DNG GI+ Sbjct: 233 QRVMI----RMNRNLLYRALSNLLSNTLKHNPKGTKVALSLTDTHEAILLEVMDNGIGIA 288 Query: 269 DELKEVIFDPFVRGDAARPGDGGTGLGLAISKQILEL 305 +ELKE IF PFVRGD AR G+ GTGLGL K+ L Sbjct: 289 EELKESIFQPFVRGDKARTGE-GTGLGLPSPKKRLNF 324 >C3HA85.1 C3HA85_BACTU Putative uncharacterized protein Length = 442 Score = 270 bits (689), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 133/301 (44%), Positives = 207/301 (68%), Gaps = 4/301 (1%) Query: 29 FGMSIYIFSQLMVKRITRPLEQIAEAIERMGKGEYKERLSITADYEFSVIQHRFNEMAES 88 F M++YIFS+ + ++ITRPL+++A E++ G+Y +RL+ +E IQH FN M+E Sbjct: 145 FSMNVYIFSRQIARKITRPLDKLATGFEKIASGKYDKRLNYETYFELMQIQHSFNVMSEK 204 Query: 89 LEQAERENRRLQDSKQRMLADLSHDLKTPVTTIQGYAKALQLGLVDSEEKKERYLQLIYN 148 L++ E+E +RL+++KQ+ML DLSHDL+TP+TT+QGY +ALQLG++ + ++ER L +IYN Sbjct: 205 LDKIEKEKKRLEETKQKMLVDLSHDLRTPITTVQGYVEALQLGIITEKSERERTLNVIYN 264 Query: 149 KATVVTALIDDLFRLSKLERPDHPISVERGDLAELLREIAADYYDAMEDKGMVMELDIPS 208 K ++ L +D+F LSKLE D+P V D++E +RE+ +YYD + K ++++ IPS Sbjct: 265 KIRIIAVLTEDIFELSKLEHSDYPFEVHPTDVSEFIRELLVEYYDLFQAKRLILQYQIPS 324 Query: 209 GEVMAGYXXXXDPGLMRRAIANLLSNAVQHNSGGTVVLIALEELAEDVRIRVQDNGGGIS 268 EV+A + L+ RAI+N++SNA+Q+N+ GT V ++L E V I + DNG GI Sbjct: 325 KEVIAP----INNRLLYRAISNIISNALQYNAAGTTVFVSLIEDKTKVYINIIDNGIGIP 380 Query: 269 DELKEVIFDPFVRGDAARPGDGGTGLGLAISKQILELHRGKLKLDNRNGLTVFELVVRKK 328 +++K+ IFD FVR D +R +GG+GLGL I+K I+E H G + LD+ T F + + K Sbjct: 381 EDMKQSIFDAFVRVDDSRENNGGSGLGLTIAKHIVEKHGGSINLDSTKKKTHFCISLPKC 440 Query: 329 S 329 S Sbjct: 441 S 441 >B5UX80.1 B5UX80_BACCE Sensor protein EC=2.7.13.3 Length = 465 Score = 269 bits (687), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 134/301 (44%), Positives = 206/301 (68%), Gaps = 4/301 (1%) Query: 29 FGMSIYIFSQLMVKRITRPLEQIAEAIERMGKGEYKERLSITADYEFSVIQHRFNEMAES 88 F M++YIFS+ + ++ITRPL+++A E + G+Y +RL+ +E IQH FN M+E Sbjct: 168 FSMNVYIFSRQIARKITRPLDKLATGFEEIASGKYDKRLNYETYFELMQIQHSFNVMSEK 227 Query: 89 LEQAERENRRLQDSKQRMLADLSHDLKTPVTTIQGYAKALQLGLVDSEEKKERYLQLIYN 148 L++ E+E +RL+++KQ+ML DLSHDL+TP+TT+QGY +ALQLG++ + ++ER L +IYN Sbjct: 228 LDKIEKEKKRLEETKQKMLVDLSHDLRTPITTVQGYVEALQLGIITEKGERERTLNVIYN 287 Query: 149 KATVVTALIDDLFRLSKLERPDHPISVERGDLAELLREIAADYYDAMEDKGMVMELDIPS 208 K ++ L +D+F LSKLE D+P V D+AE +RE+ +YYD + K ++++ IPS Sbjct: 288 KIRIIAVLTEDIFELSKLEHSDYPFEVHPTDVAEFIRELLVEYYDLFQAKRLILQYQIPS 347 Query: 209 GEVMAGYXXXXDPGLMRRAIANLLSNAVQHNSGGTVVLIALEELAEDVRIRVQDNGGGIS 268 EV+A + L+ RAI+N++SNA+Q+N+ GT V ++L E V I + DNG GI Sbjct: 348 KEVIAP----INNRLLYRAISNIISNALQYNTAGTTVFVSLIEDESKVYINIIDNGIGIP 403 Query: 269 DELKEVIFDPFVRGDAARPGDGGTGLGLAISKQILELHRGKLKLDNRNGLTVFELVVRKK 328 +++K+ IFD FVR D +R +GG+GLGL I+K I+E H G + LD+ T F + + K Sbjct: 404 EDMKQSIFDAFVRVDDSRENNGGSGLGLTIAKHIVEKHGGSINLDSTKKKTHFCISLPKC 463 Query: 329 S 329 S Sbjct: 464 S 464 >Q3EQF5.1 Q3EQF5_BACTI Sensor protein EC=2.7.13.3 Length = 472 Score = 268 bits (686), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 134/301 (44%), Positives = 207/301 (68%), Gaps = 4/301 (1%) Query: 29 FGMSIYIFSQLMVKRITRPLEQIAEAIERMGKGEYKERLSITADYEFSVIQHRFNEMAES 88 F M++YIFS+ + ++ITRPL+++A E + G+Y +RL+ +E IQH FN M+E Sbjct: 175 FSMNVYIFSRQIARKITRPLDKLATGFEEIASGKYDKRLNYETYFELMQIQHSFNVMSEK 234 Query: 89 LEQAERENRRLQDSKQRMLADLSHDLKTPVTTIQGYAKALQLGLVDSEEKKERYLQLIYN 148 L++ E+E +RL+++KQ+ML DLSHDL+TP+TT+QGY +ALQLG++ + ++ER L +IYN Sbjct: 235 LDKIEKEKKRLEETKQKMLVDLSHDLRTPITTVQGYVEALQLGIITEKGERERTLNVIYN 294 Query: 149 KATVVTALIDDLFRLSKLERPDHPISVERGDLAELLREIAADYYDAMEDKGMVMELDIPS 208 K ++ L +D+F LSKLE D+P V D++E +RE+ A+YYD + K ++++ +IP Sbjct: 295 KIRIIAVLTEDIFELSKLEHSDYPFEVHPTDVSEFIRELLAEYYDLFQAKRLILQYEIPP 354 Query: 209 GEVMAGYXXXXDPGLMRRAIANLLSNAVQHNSGGTVVLIALEELAEDVRIRVQDNGGGIS 268 EV+A + L+ RAI+N++SNA+Q+N+ GT V I+L E V I + DNG GI Sbjct: 355 KEVIAP----INNRLLYRAISNIISNALQYNTAGTTVFISLIEDESKVYINIIDNGIGIP 410 Query: 269 DELKEVIFDPFVRGDAARPGDGGTGLGLAISKQILELHRGKLKLDNRNGLTVFELVVRKK 328 +++K+ IFD FVR D +R +GG+GLGL I+K I+E H G + LD+ T F + + K Sbjct: 411 EDMKQSIFDAFVRVDDSRENNGGSGLGLTIAKHIVEKHGGSINLDSTKKKTHFCISLPKC 470 Query: 329 S 329 S Sbjct: 471 S 471 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,843,326,940 Number of extensions: 75795986 Number of successful extensions: 354928 Number of sequences better than 1.0e-05: 28628 Number of HSP's gapped: 298214 Number of HSP's successfully gapped: 28703 Length of query: 339 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 203 Effective length of database: 1,779,438,163 Effective search space: 361225947089 Effective search space used: 361225947089 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)