BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0286.0003.p (240 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q44929.1 GTCR_ANEMI Response regulator gtcR 283 1e-74 C3BKB0.1 C3BKB0_9BACI Two-component response regulator 277 5e-73 C3ALG3.1 C3ALG3_BACMY Two-component response regulator 276 1e-72 C3IC79.1 C3IC79_BACTU Two-component response regulator 271 3e-71 B3K776.1 B3K776_9BACI Response regulator receiver 259 1e-67 >Q44929.1 GTCR_ANEMI Response regulator gtcR Length = 242 Score = 283 bits (723), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 138/238 (57%), Positives = 171/238 (71%), Gaps = 2/238 (0%) Query: 3 VQRTVLLVDDNRXXXXXXXXXXXXXGLRILEAYNGAQAWTCIQQESIDLAVLDIMMPELN 62 + +T+L+ DD RI+EAY+G QAW I+Q +DLA++DIMMP L+ Sbjct: 1 MSKTILIADDEPEIIELLKLFLERESYRIIEAYDGEQAWNYIRQHPVDLAIIDIMMPALD 60 Query: 63 GVQLLQLLRAEYKLPVILLSAKNQDSDKILGLRLGADDFISKPFNPLEVVARIHAMLRRT 122 G QL++ L EYKLPVI+LSAKN+DSDKILGL LGADDFISKPFNPLE VARI A LRR Sbjct: 61 GFQLIKRLTNEYKLPVIILSAKNRDSDKILGLGLGADDFISKPFNPLEAVARIQAQLRRA 120 Query: 123 YDFNEPAEPVQDTLGHTSIGELMLDHTDCMLYKAGREIPLTAIEYKLLSTLMNAP-GRIF 181 ++FNEP E T T++G L L HT C++Y+ +T +EY+LL+T M IF Sbjct: 121 FEFNEPEEKAIST-QSTTVGRLTLLHTACVVYRGDETYSVTPLEYRLLNTFMQCSRTSIF 179 Query: 182 TKKQLFEQVWSEHYYEDANTIMVHISRLRDKVEETPKQPEYIRTIRGLGYKFAKKDDF 239 TK+QLFEQ WSE Y+ED NTIMV ISRLRDK+E+ P+QP YI+T+RGLGYKFA KDDF Sbjct: 180 TKQQLFEQAWSETYWEDDNTIMVQISRLRDKIEDQPRQPVYIKTVRGLGYKFASKDDF 237 >C3BKB0.1 C3BKB0_9BACI Two-component response regulator Length = 238 Score = 277 bits (709), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 134/235 (57%), Positives = 171/235 (72%), Gaps = 2/235 (0%) Query: 5 RTVLLVDDNRXXXXXXXXXXXXXGLRILEAYNGAQAWTCIQQESIDLAVLDIMMPELNGV 64 RT+L+VDD G ILEA +G A IQ+ IDLA++DIMMP +NG Sbjct: 3 RTILIVDDEPEIIEILRLFLEMEGFSILEARDGKSALNFIQKFKIDLAIIDIMMPNINGY 62 Query: 65 QLLQLLRAEYKLPVILLSAKNQDSDKILGLRLGADDFISKPFNPLEVVARIHAMLRRTYD 124 +L++++R EYK+P+I+LSAKNQ+ DKI+GL LGADDFISKPF+ LEV+ARI A LRRTYD Sbjct: 63 ELIKIVRKEYKMPIIILSAKNQEMDKIMGLGLGADDFISKPFSLLEVLARIQAQLRRTYD 122 Query: 125 FNEPAEPVQDTLGHTSIGELMLDHTDCMLYKAGREIPLTAIEYKLLSTLMNAPGRIFTKK 184 FN + + T I +L+LDH C+L K G EI L+A+EYKLL M PGRIFTKK Sbjct: 123 FN--TDSLNQEGSQTCIDDLVLDHHSCILDKRGHEIKLSALEYKLLKLFMGEPGRIFTKK 180 Query: 185 QLFEQVWSEHYYEDANTIMVHISRLRDKVEETPKQPEYIRTIRGLGYKFAKKDDF 239 Q+FE VWS+HYY D NTIMV ISRLR+K+E+ P+ P Y++TIRGLGY+FAKK++ Sbjct: 181 QIFENVWSDHYYSDDNTIMVQISRLREKIEDHPRNPVYLKTIRGLGYRFAKKEEL 235 >C3ALG3.1 C3ALG3_BACMY Two-component response regulator Length = 238 Score = 276 bits (705), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 134/235 (57%), Positives = 171/235 (72%), Gaps = 2/235 (0%) Query: 5 RTVLLVDDNRXXXXXXXXXXXXXGLRILEAYNGAQAWTCIQQESIDLAVLDIMMPELNGV 64 RT+L+VDD G ILEA +G A IQ+ IDLA++DIMMP +NG Sbjct: 3 RTILIVDDEPEIIEILRLFLEMEGFSILEARDGKSALNFIQKFKIDLAIIDIMMPNINGY 62 Query: 65 QLLQLLRAEYKLPVILLSAKNQDSDKILGLRLGADDFISKPFNPLEVVARIHAMLRRTYD 124 +L++++R EYK+P+I+LSAKNQ+ DKI+GL LGADDFISKPF+ LEV+ARI A LRRTYD Sbjct: 63 ELIKIVRKEYKMPIIILSAKNQEMDKIMGLGLGADDFISKPFSLLEVLARIQAQLRRTYD 122 Query: 125 FNEPAEPVQDTLGHTSIGELMLDHTDCMLYKAGREIPLTAIEYKLLSTLMNAPGRIFTKK 184 FN + + T I +L+LDH C+L K G EI L+A+EYKLL M PGRIFTKK Sbjct: 123 FN--TDLLNQEGSQTCIDDLVLDHHSCILDKRGHEIKLSALEYKLLKLFMGEPGRIFTKK 180 Query: 185 QLFEQVWSEHYYEDANTIMVHISRLRDKVEETPKQPEYIRTIRGLGYKFAKKDDF 239 Q+FE VWS+HYY D NTIMV ISRLR+K+E+ P+ P Y++TIRGLGY+FAKK++ Sbjct: 181 QIFENVWSDHYYSDDNTIMVQISRLREKIEDHPRNPVYLKTIRGLGYRFAKKEEL 235 >C3IC79.1 C3IC79_BACTU Two-component response regulator Length = 238 Score = 271 bits (694), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 124/237 (52%), Positives = 175/237 (73%), Gaps = 2/237 (0%) Query: 3 VQRTVLLVDDNRXXXXXXXXXXXXXGLRILEAYNGAQAWTCIQQESIDLAVLDIMMPELN 62 +++T+L+VDD+ G +LEA +G A +++ IDLA++DIMMP+++ Sbjct: 1 MKKTILIVDDDTDIIELLKLFLEIEGFLVLEASDGEAALKYVKENHIDLAIVDIMMPKMD 60 Query: 63 GVQLLQLLRAEYKLPVILLSAKNQDSDKILGLRLGADDFISKPFNPLEVVARIHAMLRRT 122 G QL++ +R K P+++LSAK Q+ DKI+GL LGADDFI KPF+PLE++AR+ A LRR+ Sbjct: 61 GYQLIKKVRETLKFPILILSAKTQEIDKIMGLGLGADDFIVKPFSPLEIIARVQAHLRRS 120 Query: 123 YDFNEPAEPVQDTLGHTSIGELMLDHTDCMLYKAGREIPLTAIEYKLLSTLMNAPGRIFT 182 Y+FN+ ++ T+ IG L+LDH CMLYK + I L+AIEYKLL+ M PGRIFT Sbjct: 121 YEFNK--NTLESTVNQIHIGNLILDHHSCMLYKYNKSITLSAIEYKLLTLFMEDPGRIFT 178 Query: 183 KKQLFEQVWSEHYYEDANTIMVHISRLRDKVEETPKQPEYIRTIRGLGYKFAKKDDF 239 KKQ+FE+VWS+HYY D N IMVHISRLR+K+E++P+ P YI+TIRGLGY+FA++D+ Sbjct: 179 KKQIFERVWSDHYYSDDNAIMVHISRLREKLEDSPRNPVYIKTIRGLGYRFARRDEL 235 >B3K776.1 B3K776_9BACI Response regulator receiver Length = 237 Score = 259 bits (663), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 121/212 (57%), Positives = 161/212 (75%), Gaps = 2/212 (0%) Query: 28 GLRILEAYNGAQAWTCIQQESIDLAVLDIMMPELNGVQLLQLLRAEYKLPVILLSAKNQD 87 G L A++G A ++ + +DLA+ DIMMP ++G QLL+ +R +YK+PVIL+SAKNQ+ Sbjct: 26 GYTTLAAFDGLAALEHLRSQRVDLALFDIMMPVIDGYQLLRTIRQDYKIPVILVSAKNQE 85 Query: 88 SDKILGLRLGADDFISKPFNPLEVVARIHAMLRRTYDFNEPAEPVQDTLGHTSIGELMLD 147 DKI GL+LGADD++SKPF+P+EV+ARI A LRR+Y+FNE +EP D + T IG+L+LD Sbjct: 86 LDKITGLKLGADDYVSKPFSPMEVMARIQAQLRRSYEFNESSEP--DPVSVTRIGDLVLD 143 Query: 148 HTDCMLYKAGREIPLTAIEYKLLSTLMNAPGRIFTKKQLFEQVWSEHYYEDANTIMVHIS 207 H + MLY G+ I L+AIEYKLL+ M PGR+FTK+Q+FE W E Y D N +MV IS Sbjct: 144 HREYMLYINGKPISLSAIEYKLLNLFMGEPGRVFTKRQMFEHAWDELYLADDNAVMVQIS 203 Query: 208 RLRDKVEETPKQPEYIRTIRGLGYKFAKKDDF 239 RLRDK+E P+ P YI+TIRGLGY+FAKKD+ Sbjct: 204 RLRDKIETNPRNPVYIKTIRGLGYRFAKKDEL 235 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.139 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,329,420,467 Number of extensions: 51841979 Number of successful extensions: 199984 Number of sequences better than 1.0e-05: 22703 Number of HSP's gapped: 180491 Number of HSP's successfully gapped: 22757 Length of query: 240 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 108 Effective length of database: 1,817,122,223 Effective search space: 196249200084 Effective search space used: 196249200084 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)