BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0284.0029.p (256 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9U7B6.1 A9U7B6_PHYPA Predicted protein 347 5e-94 B1DAU4.1 B1DAU4_9BACL Transcriptional regulator, AraC family 295 3e-78 A8STG6.1 A8STG6_9FIRM Putative uncharacterized protein 124 7e-27 B0MQ29.1 B0MQ29_9FIRM Putative uncharacterized protein 120 1e-25 A7VPJ4.1 A7VPJ4_9CLOT Putative uncharacterized protein 109 3e-22 >A9U7B6.1 A9U7B6_PHYPA Predicted protein Length = 258 Score = 347 bits (891), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 164/254 (64%), Positives = 196/254 (77%), Gaps = 1/254 (0%) Query: 4 IRYVEFDAAHPDDFVYSIPDGLDAWLLVLTQTAALFEVAGELKEFPAHSAVLYPPNHAIH 63 I YV +DAAHP DF+Y IP G D WLL+LTQT A F V GE++E+PA+ AVL+PP I Sbjct: 5 IYYVGYDAAHPGDFIYDIPAGHDFWLLILTQTPAEFWVQGEIREYPANCAVLFPPRQKIM 64 Query: 64 YRACSAKYVNDWVRFDADESYITESALPTGVPFSLPDPGYCHQLFQLLTLENTFHNDYRE 123 YRACS ++VNDWVRF+ DESY+ E+ LP GVP +PDPGYC QLFQLL EN F DYRE Sbjct: 65 YRACSGQFVNDWVRFETDESYVLETTLPRGVPIPMPDPGYCRQLFQLLATENFFSCDYRE 124 Query: 124 LSIDYLFRIIFNKLHEASQDKL-SPQYYKLLELRKALYNNPGHPWTVSSMAEYLHISAGY 182 LSIDYLFRI+FNKL EA Q K SP Y KLL LRKA++N PG W+V SMA+ +H+S GY Sbjct: 125 LSIDYLFRILFNKLLEAFQSKENSPHYQKLLNLRKAIHNRPGAEWSVPSMADDVHLSPGY 184 Query: 183 LQTIYKSTFGISCMEDVIHCRIRLAKEKLVFGPHKIAELASLCGYANVEHFCRQFRQHTG 242 LQT+YK+TFGISCM+DVI CRIRLAKE+L+ G +IA+++ LCGY NVEHF RQFR+ G Sbjct: 185 LQTLYKATFGISCMDDVIQCRIRLAKERLIHGSLRIADISELCGYKNVEHFSRQFRRIVG 244 Query: 243 CSPRAYRDKHASRL 256 C+PR YR RL Sbjct: 245 CTPREYRQSGDLRL 258 >B1DAU4.1 B1DAU4_9BACL Transcriptional regulator, AraC family Length = 263 Score = 295 bits (754), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 144/250 (57%), Positives = 181/250 (72%), Gaps = 3/250 (1%) Query: 1 MPKIRYVEFDAAHPDDFVYSIPDGLDAWLLVLTQTAALFEVAGELKEFPAHSAVLYPPNH 60 M I YV DAAH +FV+ IP G WLLV+T+T A F V G+L+++P+ SAVLY + Sbjct: 1 MNHIHYVGSDAAHDGNFVFDIPQGHHCWLLVITKTPAQFWVNGDLQKYPSQSAVLYRAHQ 60 Query: 61 AIHYRACSAKYVNDWVRFDADESYITESALPTGVPFSLPDPGYCHQLFQLLTLENTFHND 120 I+Y+AC+ +YVNDW+RF++DE Y+ S +P G+PFSL DP YCH+L +LL +E+ F+ D Sbjct: 61 KIYYKACADRYVNDWIRFESDEPYV--SNIPFGIPFSLDDPDYCHKLIELLVIEHNFNRD 118 Query: 121 YRELSIDYLFRIIFNKLHEA-SQDKLSPQYYKLLELRKALYNNPGHPWTVSSMAEYLHIS 179 Y++ SID L R +FNKL E+ D + QYY LL LR A+ N+P WTV MAEY+ IS Sbjct: 119 YKKSSIDCLLRTLFNKLLESYCHDGFTTQYYDLLRLRAAIQNSPDDHWTVPKMAEYVRIS 178 Query: 180 AGYLQTIYKSTFGISCMEDVIHCRIRLAKEKLVFGPHKIAELASLCGYANVEHFCRQFRQ 239 GYLQTIYK TFGISCMEDVI+CRIRLAKE L G I E+A CGY NVEHFCRQF+Q Sbjct: 179 PGYLQTIYKKTFGISCMEDVINCRIRLAKEYLFQGSRSIHEVADRCGYQNVEHFCRQFKQ 238 Query: 240 HTGCSPRAYR 249 TG SPR +R Sbjct: 239 VTGFSPRNFR 248 >A8STG6.1 A8STG6_9FIRM Putative uncharacterized protein Length = 264 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 77/251 (30%), Positives = 121/251 (48%), Gaps = 3/251 (1%) Query: 1 MPKIRYVEFDAAHPDDFVYSIPDGLDAWLLVLTQTAALFEVAGELKEFPAHSAVLYPPNH 60 M I V + H +F PDG LLV+ +T+A+ GE S +LY Sbjct: 1 MININTVCQNVRHKGNFEICRPDGSGDDLLVIFKTSAVLIQNGEEITVSPDSLILYSKGT 60 Query: 61 AIHYRACSAKYVNDWVRFDADESYITESALPTGVPFSLPDPGYCHQLFQLLTLENTFHND 120 HY+ YVN +V FD D++ + + + T + D +L +L EN + Sbjct: 61 MQHYKTLCGSYVNHFVHFDTDDTELM-NGIKTDTLITSADIPAIEELLTILCRENVADST 119 Query: 121 YRELSIDYLFRIIFNKLHEAS--QDKLSPQYYKLLELRKALYNNPGHPWTVSSMAEYLHI 178 R+ + L ++I K+ E+S D + L LR +Y+N G + +AE +++ Sbjct: 120 NRKQYENMLMQMILMKISESSINPDSDKSRISALEMLRTDIYSNAGSYSNIYQLAEKMNL 179 Query: 179 SAGYLQTIYKSTFGISCMEDVIHCRIRLAKEKLVFGPHKIAELASLCGYANVEHFCRQFR 238 S YLQ IYK FGISC ED++ +I+ + L + E++ LCGY N F + F+ Sbjct: 180 SPSYLQAIYKRKFGISCYEDILSAKIKTGQYYLSTTDMTVKEISDLCGYENEICFMKIFK 239 Query: 239 QHTGCSPRAYR 249 + TG +P YR Sbjct: 240 KRTGITPSEYR 250 >B0MQ29.1 B0MQ29_9FIRM Putative uncharacterized protein Length = 264 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/260 (28%), Positives = 124/260 (47%), Gaps = 13/260 (5%) Query: 3 KIRYVEFDAAHP---DDFVYSIPDGLDAWLLVLTQTAALFEVAGELKEFPAHSAVLYPPN 59 KI + ++ H ++F+ P G A LL+L +T A+F+V G + +S +L P+ Sbjct: 2 KIGSIGYNHVHDMKYENFIMDRPKGPGAVLLLLIKTPAVFKVGGVQYQVKENSFILMSPD 61 Query: 60 HAIHYRACSAKYVNDWVRF---DADESYITESALPTGVPFSLPDPGYCHQLFQLLTLEN- 115 +Y A Y +DWV F D D+ Y+ + +P +P L D L +L E+ Sbjct: 62 TPCYYTAQENVYTDDWVYFENDDWDKEYVEKLGIPMDIPVYLGDMDELSHLVHILVYEHY 121 Query: 116 ---TFHNDYRELSIDYLFRIIFNKLHE---ASQDKLSPQYYKLLELRKALYNNPGHPWTV 169 + + ID LF ++ L S +LS ++Y+ ++R ++ P H V Sbjct: 122 SGAVNSEEIEKKYIDVLFLMLSRTLKSRNCMSSKQLSERHYRFTQIRTMIFTMPDHVGNV 181 Query: 170 SSMAEYLHISAGYLQTIYKSTFGISCMEDVIHCRIRLAKEKLVFGPHKIAELASLCGYAN 229 +A +S Q +YK FG + ++D+I R + AK L I E+++ CGY N Sbjct: 182 DDLAAQAGMSRSGFQHLYKKLFGTTVIKDIIEGRTKRAKRLLSSTRLTIKEISTRCGYTN 241 Query: 230 VEHFCRQFRQHTGCSPRAYR 249 F RQF++ G +P YR Sbjct: 242 EYSFMRQFKEQVGKTPTEYR 261 >A7VPJ4.1 A7VPJ4_9CLOT Putative uncharacterized protein Length = 264 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/253 (29%), Positives = 122/253 (48%), Gaps = 11/253 (4%) Query: 11 AAHPDDFVYSIPDGLDAWLLVLTQTAALFEVAGE-LKEFPAHSAVLYPPNHAIHY-RACS 68 A H +F P G +L + ++ F + E + + +LY + A Sbjct: 10 AVHEKNFRIRRPSGSGDYLFLHLKSPTRFFLENEKIYDGKTDEIMLYRKGTPQFFGEAAG 69 Query: 69 AKYVNDWVRFDA----DESYITESALPTGVPFSLPDPGYCHQLFQLLTLENTFHNDYREL 124 +V+D++ FD DE++I +L P LP + Q + E N Y+E+ Sbjct: 70 ITHVDDFMHFDTSSSEDENFIQGLSLKYDEPVRLPYINPFMSIHQNICFEFLNKNHYQEI 129 Query: 125 SIDYLFRIIFNKLHEASQDKLSPQYYKLL-----ELRKALYNNPGHPWTVSSMAEYLHIS 179 +ID L + KL E +K Y L +LR A+Y++P WTV MA ++++S Sbjct: 130 AIDCLLKYFLIKLEECMNEKKFRNYDITLYERFNQLRLAIYSSPQQAWTVKKMASFVNLS 189 Query: 180 AGYLQTIYKSTFGISCMEDVIHCRIRLAKEKLVFGPHKIAELASLCGYANVEHFCRQFRQ 239 Y+Q++YK F ISC+ D+I R+ A + LV + + ++A LCGY + +F R F+ Sbjct: 190 PSYVQSLYKKFFHISCVADLIKSRMDRAIQMLVVTDYPVNKIALLCGYESNIYFSRHFKA 249 Query: 240 HTGCSPRAYRDKH 252 G +P YR K+ Sbjct: 250 KIGMTPTEYRQKY 262 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.138 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,652,146,041 Number of extensions: 66535607 Number of successful extensions: 190188 Number of sequences better than 1.0e-05: 580 Number of HSP's gapped: 191397 Number of HSP's successfully gapped: 580 Length of query: 256 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 123 Effective length of database: 1,807,701,208 Effective search space: 222347248584 Effective search space used: 222347248584 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 130 (54.7 bits)