BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0284.0025.p (469 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9U6W0.1 A9U6W0_PHYPA Predicted protein (Fragment) 348 7e-94 C2AXH9.1 C2AXH9_9MICO Carbohydrate ABC transporter substrate-bin... 239 4e-61 B1S957.1 B1S957_9BIFI Putative uncharacterized protein 228 1e-57 B1S933.1 B1S933_9BIFI Putative uncharacterized protein 203 3e-50 A7A4E7.1 A7A4E7_BIFAD Putative uncharacterized protein 186 5e-45 >A9U6W0.1 A9U6W0_PHYPA Predicted protein (Fragment) Length = 308 Score = 348 bits (893), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 163/201 (81%), Positives = 178/201 (88%) Query: 1 LEELIPAGMIMDLTDKIKNTKYLSQYVDNHFKPFNAAFGSLNPDGKIYALXXXXXXXXXX 60 LEELIPAG+IMDLTDK+KNTKYLSQYVDNHFKPFN AF +NPDGKIYAL Sbjct: 108 LEELIPAGLIMDLTDKVKNTKYLSQYVDNHFKPFNEAFDKVNPDGKIYALPTFTADTSPT 167 Query: 61 XXXEELPYSSPIMPWDYYKGIGSPKLNNLKDLMNALKQMQEKYPKTPDGKPIVPITLWKD 120 E+ PYSSPI+PWDYYKG+G+PKLNNL DL+N LK+MQEKYPKTPDGKPIVPITLWKD Sbjct: 168 TFSEDQPYSSPILPWDYYKGVGAPKLNNLTDLLNVLKKMQEKYPKTPDGKPIVPITLWKD 227 Query: 121 WDNGSMENVRWLSNWYGYEQPNGTSTIQLNAKGDIVPLVDDNSMYKKILQFYYDANKMGL 180 WD G MENVRWLSNWYGYEQP+GTST+QLNAKGDIVPL+DDNSMYKKILQFY+ AN+MGL Sbjct: 228 WDGGGMENVRWLSNWYGYEQPDGTSTLQLNAKGDIVPLIDDNSMYKKILQFYFTANQMGL 287 Query: 181 VDPDSPSQDWNKVSEKLTNKQ 201 +DPDS SQDWNKVSEKLTNKQ Sbjct: 288 IDPDSASQDWNKVSEKLTNKQ 308 >C2AXH9.1 C2AXH9_9MICO Carbohydrate ABC transporter substrate-binding protein, CUT1 family Length = 587 Score = 239 bits (611), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 159/479 (33%), Positives = 244/479 (50%), Gaps = 26/479 (5%) Query: 1 LEELIPAGMIMDLTDKIKNTKYLSQYVDNHFKPFNAAFGSLNPDGK--IYALXXXXXXXX 58 ++ELI G+++D++ + + +SQY +AA LN DGK IY L Sbjct: 117 MDELIAGGLLLDVSKYYGSMESVSQY--------DAAVQRLN-DGKDGIYGLPTQVSTLP 167 Query: 59 XXXXXEEL-PYSSPIMPWDYYKGIGSPKLNNLKDLMNALKQMQEKYPKTPDGKPIVPITL 117 E + P + WDYY G P++ L+DL+ LK+MQ+ +P +G P ++L Sbjct: 168 PTAPSEGIDPTFGAYLRWDYYADAGYPEIGTLEDLLPILKEMQDAHPTADNGGPTYGLSL 227 Query: 118 WKDWDNGSMENVRWLSNWYGYEQPNGTSTIQLNAKG-DIVPLVDDNSMYKKILQFYYDAN 176 +KDWD M + + YG+++ + A G + ++D +S Y + LQ Y+DAN Sbjct: 228 FKDWDGNMMVMGKQPACLYGFDE---MGFVLAKADGSEYQSIIDSDSAYVRSLQLYFDAN 284 Query: 177 KMGLVDPDSPSQDWNKVSEKLTNKQVLLLWYSW-QRGFYNTIERGNQGDGNVAIPIADTH 235 ++G++DP+S +Q+++ + K N QVLL W+ W + YNT G G +P+AD Sbjct: 285 QLGILDPESTTQNYDTMFAKYQNGQVLLSWWPWLGQSAYNTTANLEAGKGFEMVPLADQE 344 Query: 236 IIQNSDAYFGNGRVFAIGSKAKSPERIMEFMDWMSSPEGLRYYTN------GFEGFNYEK 289 I +G +V AIGS A+ P+RI F+DW+ S EG+ N G EG +E Sbjct: 345 IFSYGAEVYGGKQVLAIGSHAEDPDRIAAFVDWLYSREGVLASGNQTMGAAGPEGLTWEL 404 Query: 290 TPDGKFKLTEVGQTA-FQENTPVPXXXXXXXXXXXXSKLNTMIMSDFVIDPETKEFYNST 348 D + +LT+ G+ A + VP S LN + DP+T YN Sbjct: 405 VGD-QPELTDFGKAAILGGDGDVPAEWGGGKYADGVSALNVTTVLPIDTDPKTGYEYNYK 463 Query: 349 YWSSTIEANKTVLTTEWQKAYN-ATTPTEYYQKNNMIDIVPNINTSLGSDSSDIKNKRSQ 407 YW S E T LT +W + AT+ +Y KN+ + + P + +DSS+I+ R+Q Sbjct: 464 YWPSVQEITGTALTDDWSAHMDDATSTMDYLVKNDQVLVAPGSGFTTPADSSEIETIRNQ 523 Query: 408 ISDYVKNTSWKMIFAKDQAEFDQLWTKLKSDVVGLGWNDVLAVDTERAQKIVKLRADAV 466 + V SWKM++AKDQAEFD L +L+S GLG+ VL VD A+ + R V Sbjct: 524 VKASVVEYSWKMVYAKDQAEFDSLLAQLQSTAEGLGYAKVLEVDMANAEAQNEAREAVV 582 >B1S957.1 B1S957_9BIFI Putative uncharacterized protein Length = 567 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 148/474 (31%), Positives = 237/474 (50%), Gaps = 22/474 (4%) Query: 2 EELIPAGMIMDLTDKIKNTKYLSQY---VDNHFKPFNAAFGSLNPDGKIYALXXXXXXXX 58 E+++ + ++ DL+ IKNTKYL Y +D K N G + +L Sbjct: 91 EKVVKSKLVTDLSSYIKNTKYLKTYQGAIDQLTKDANQESGMWGIPTSVSSLSPTESSEG 150 Query: 59 XXXXXEELPYSSPIMPWDYYKGIGSPKLNNLKDLMNALKQMQEKYPKTPDGKPIVPITLW 118 P P + WDYYK IG PK+ L+DL+ LKQMQ+K + + ++L+ Sbjct: 151 VE------PTFGPFVRWDYYKEIGYPKVATLEDLLPVLKQMQDKAREETGSDDVYALSLF 204 Query: 119 KDWDNGSMENVRWLSNWYGYEQPNGTSTIQLNAKG-DIVPLVDDNSMYKKILQFYYDANK 177 KDWD+ +M+N L +YGY + GT + NA G D L+D+N +Y + L+FY A + Sbjct: 205 KDWDDQAMQNGFQLPAFYGYAE--GTGYVMSNADGTDAQSLIDENGVYVRALKFYNKAEQ 262 Query: 178 MGLVDPDSPSQDWNKVSEKLTNKQVLLLWYSW-QRGFYNTIERGNQGDGNVAIPIADTHI 236 MGLVDP+S +Q+++ + K ++L ++ W + YNT G G + + I D I Sbjct: 263 MGLVDPESTTQNYDTMYSKYKEGKILFSFWPWLGQAAYNTDAHKKDGKGFMMLSIDDMKI 322 Query: 237 IQNSDAYFGNGRVFAIGSKAKSPERIMEFMDWMSSPEGLRYYTN------GFEGFNYEKT 290 G +G KAK+ ER+++F+DW+ SPEG++ + G +G ++ Sbjct: 323 ASKGAQPNGTTTFIGVGEKAKNKERLVKFIDWLYSPEGIQAAGSQTNGAAGLKGLTWD-I 381 Query: 291 PDGKFKLTEVGQTAF-QENTPVPXXXXXXXXXXXXSKLNTMIMSDFVIDPETKEFYNSTY 349 DGK LT+ G A E+ VP S+LN + + IDP T YN Sbjct: 382 KDGKPVLTDFGVKAMGGESVNVPEEYGGGGYSDGASQLNVSTVLNKDIDPRTNAPYNYQM 441 Query: 350 WSSTIEANKTVLTTEWQKAY-NATTPTEYYQKNNMIDIVPNINTSLGSDSSDIKNKRSQI 408 W S + T L +WQ+ A T EY +++ + ++P + + + S I R Q+ Sbjct: 442 WDSELAKRDTALDKDWQEHMGGARTTMEYLEQSGKLAVIPGASYTTPDEDSVISTTRGQL 501 Query: 409 SDYVKNTSWKMIFAKDQAEFDQLWTKLKSDVVGLGWNDVLAVDTERAQKIVKLR 462 V N W+ +F+K EF+ +W+K++ +V GLG+ V VD + + + K R Sbjct: 502 KTAVVNACWQAVFSKSDDEFNSIWSKMQKEVDGLGYKKVYDVDMKNTKDMFKAR 555 >B1S933.1 B1S933_9BIFI Putative uncharacterized protein Length = 595 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 144/485 (29%), Positives = 245/485 (50%), Gaps = 46/485 (9%) Query: 3 ELIPAGMIMDLTDKIKNTKYLSQY------VDNHFKPFNAAFG-------SLNPDGKIYA 49 +L+ +G+I D+T +K KY+++Y V+ + +G +L PD Sbjct: 111 KLVKSGLIEDMTPYLKGMKYINKYKDATDYVNEQIGQKSGVWGVPASVVDTLTPDQPSEG 170 Query: 50 LXXXXXXXXXXXXXEELPYSSPIMPWDYYKGIGSPKLNNLKDLMNALKQMQEKYPKTPDG 109 L P P + WD YK IG P+++ L+DL+ LKQMQ+K + Sbjct: 171 LE---------------PTFGPYLRWDLYKEIGYPEIDTLEDLIPVLKQMQDKAREESGS 215 Query: 110 KPIVPITLWKDWDNGSMENVRWLSNWYGYEQPNGTSTIQLNAKG---DIVPLVDDNSMYK 166 I ++L+KDWD M N + + +YG+++ + AKG D + + +Y+ Sbjct: 216 DDIYAMSLFKDWDGNMMNNAKQPTCFYGFDEVG-----FVLAKGDGSDFESITKEGGIYE 270 Query: 167 KILQFYYDANKMGLVDPDSPSQDWNKVSEKLTNKQVLLLWYSW-QRGFYNTIERGNQGDG 225 ++++F+ AN+ G+VDP+S +Q+++ ++ K N +VL ++ W + +NT +G G Sbjct: 271 RVIKFFNAANRAGIVDPESTTQNYDTMNSKYKNGKVLFSFWPWLGQAAHNTNANKAEGKG 330 Query: 226 NVAIPIADTHIIQNSDAYFGNGRVFAIGSKAKSPERIMEFMDWMSSPEGLRYYTN----- 280 + P+ D I A G+ + A+GSKAK+ +R+++F++W+ SPEG+ +N Sbjct: 331 FMLAPLKDMKIFSYGAAPRGDKTMIALGSKAKNKQRLVKFINWLYSPEGVYASSNQTGGS 390 Query: 281 -GFEGFNYEKTPDGKFKLTEVGQTAFQ-ENTPVPXXXXXXXXXXXXSKLNTMIMSDFVID 338 G +G N+E DGK LTE G E+ VP S LN ++ ID Sbjct: 391 AGPKGLNWE-IKDGKPVLTEFGSAVLSGESKNVPEEWGGGSYSDGISALNFTTVTVNDID 449 Query: 339 PETKEFYNSTYWSSTIE-ANKTVLTTEWQKAYNATTPTEYYQKNNMIDIVPNINTSLGSD 397 P+T YN W S IE AN+ L +WQ+ A+T EY + N+M+ + + + Sbjct: 450 PDTGYTYNPVMWPSEIEKANQNPLNKDWQEHMGASTTMEYLENNDMLLVGAGSSYVQPEE 509 Query: 398 SSDIKNKRSQISDYVKNTSWKMIFAKDQAEFDQLWTKLKSDVVGLGWNDVLAVDTERAQK 457 +S I R I + N+SWK FA ++E +++++++ V GL + VL VD + A+ Sbjct: 510 NSQISTLRGSIKTEIVNSSWKASFASSESECEKIFSEMIKTVNGLDIDSVLKVDMKNAKD 569 Query: 458 IVKLR 462 K R Sbjct: 570 QDKAR 574 >A7A4E7.1 A7A4E7_BIFAD Putative uncharacterized protein Length = 542 Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 130/412 (31%), Positives = 206/412 (50%), Gaps = 20/412 (4%) Query: 69 SSPIMPWDYYKGIGSPKLNNLKDLMNALKQMQEKYPKTPDGKPIVPITLWKDWDNGSMEN 128 ++P + WD YK IG P++ +L L+N LKQMQ++ + I ++L+KD D M+N Sbjct: 133 AAPYIRWDIYKEIGYPQIKDLDGLLNVLKQMQDRARQDTGKDDIYAMSLFKDRDGDVMQN 192 Query: 129 VRWLSNWYGYEQPNGTSTIQLNAKGDIVPLVDDNSMYKKILQFYYDANKMGLVDPDSPSQ 188 + +W+GY G+ I + K D+ P + +Y++ L+F A MGLVDPDS +Q Sbjct: 193 AASICSWFGYTN-QGSVFISADGK-DVQPATKEGGIYQQALEFLNKAESMGLVDPDSTTQ 250 Query: 189 DWNKVSEKLTNKQVLLLWYSW-QRGFYNTIERGNQGDGNVAIPIADTHIIQNSDAYFGNG 247 DW+ + K+TN + +L +SW + N+ E +G G + P+ + + + G+G Sbjct: 251 DWDTMRTKVTNGKTMLSIWSWLGKPRMNSDENKAKGVGFMLAPLENMKVYSDGFQPDGDG 310 Query: 248 R-VFAIGSKAKSPERIMEFMDWMSSPEGLRYYTNGFEGFNYEK-------TPDGKF-KLT 298 + AIGSKAK+ R+ +F+DWM SPEG+ ++ G K DGK LT Sbjct: 311 ATIVAIGSKAKNKARLAKFIDWMYSPEGIYASSSNSGGAACPKDLGCFTTDKDGKNPTLT 370 Query: 299 EVGQTAF---QENTPVPXXXXXXXXXXXXSKLNTMIMSDFVIDPETKEFYNSTYWSSTIE 355 + GQ A N V SKLN +S IDP T E YN W S Sbjct: 371 KFGQQAMTGDHANLKVSAKLGGSSYDDGYSKLNFKAVSQNDIDPNTGEAYNPLLWKSN-- 428 Query: 356 ANKTVLTTEWQKAY-NATTPTEYYQKNNMIDIVPNINTSLGSDSSDIKNKRSQISDYVKN 414 ++T L +W NAT +Y QK + I + + + S + RS + N Sbjct: 429 QDETELFKDWSAHMENATNDIDYLQKAGKLSIAAGASYTTPQEDSTVSATRSSVKSETVN 488 Query: 415 TSWKMIFAKDQAEFDQLWTKLKSDVVGLGWNDVLAVDTERAQKIVKLRADAV 466 SW+ I A +F++ + ++ + LG+ +VL VD + A+ +++ R D V Sbjct: 489 ASWQAITA--AGKFEKTLDEARTKIDNLGYKEVLKVDQQNAKDLIQARKDIV 538 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.132 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,980,970,089 Number of extensions: 129777079 Number of successful extensions: 218635 Number of sequences better than 1.0e-05: 15 Number of HSP's gapped: 218624 Number of HSP's successfully gapped: 15 Length of query: 469 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 330 Effective length of database: 1,751,175,118 Effective search space: 577887788940 Effective search space used: 577887788940 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)