BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0284.0023.p (322 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1S932.1 B1S932_9BIFI Putative uncharacterized protein 393 e-107 B8I621.1 B8I621_CLOCE Binding-protein-dependent transport system... 380 e-103 C2AXC9.1 C2AXC9_9MICO Carbohydrate ABC transporter membrane prot... 370 e-101 A9KQK9.1 A9KQK9_CLOPH Binding-protein-dependent transport system... 303 1e-80 B3KDQ6.1 B3KDQ6_9BACI Binding-protein-dependent transport system... 219 4e-55 >B1S932.1 B1S932_9BIFI Putative uncharacterized protein Length = 310 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 191/309 (61%), Positives = 246/309 (79%), Gaps = 6/309 (1%) Query: 20 SKKIK------MQVSATDKMISVTIYIVFSLFAFICVYPFYSIIINTISANDLSAKGEIV 73 +KKIK M+ + +++ +V + F +FAFICVYPFY +IIN+IS+N+ SA G++ Sbjct: 2 AKKIKQGIAPAMRRTKGEEVYNVFNILFFLVFAFICVYPFYYLIINSISSNNASAAGQVN 61 Query: 74 FWPKGIHFQNYVDVFKIPGLWNAFVISIGRTVIGTILTVGASAFLGFMFAQEDMWGKKFW 133 +WP+GIH++NY VF + GL + IS+ RTVIGT+LTV ASAFLGFMF QE MW +KFW Sbjct: 62 WWPQGIHWENYKQVFALSGLTTSAFISVARTVIGTVLTVIASAFLGFMFTQEKMWHRKFW 121 Query: 134 YRFTIITMFFNAGIIPWYLTMRSLHLTNNFLAYILPSIVAPFFIILVKTFVESTPKELQQ 193 YRF +ITM+FNAG+IP ++TM++LHLTNNF YILP+IV PF IILVKTFVES P LQ+ Sbjct: 122 YRFIVITMYFNAGLIPMFITMKNLHLTNNFWVYILPAIVQPFNIILVKTFVESIPASLQE 181 Query: 194 AASIDGAGTFTIFYKVILPISKPILATVAIFSAVNQWNSFQDTLLLVTDSKLYSLQFILY 253 AA +DGAGT TIF+K++LP+ PILATV IFSAV QWNSFQDTL+ +TDSKLYSLQ++LY Sbjct: 182 AAEMDGAGTLTIFWKIVLPMMAPILATVGIFSAVGQWNSFQDTLIYMTDSKLYSLQYVLY 241 Query: 254 NYINQASSLSTMVNLQNAGSTAIASLSTKQTTTSIRMTVTIIVVAPILLVYPIFQRFFVK 313 YINQA++L+ V + +A+L+T+QT TSIRMTV++IVV PIL VYP FQRFFVK Sbjct: 242 TYINQANALAASVRASAGSAMNVAALATQQTPTSIRMTVSVIVVLPILFVYPFFQRFFVK 301 Query: 314 GIIIGAVKG 322 G+++GAVKG Sbjct: 302 GMMLGAVKG 310 >B8I621.1 B8I621_CLOCE Binding-protein-dependent transport systems inner membrane component Length = 307 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 179/300 (59%), Positives = 237/300 (79%), Gaps = 1/300 (0%) Query: 24 KMQVSATDKMISVTIYIVFSLFAFICVYPFYSIIINTISANDLSAKGEIVFWPKGIHFQN 83 K + S D + + IY+VF++ C+YPFY +IINT++AND+S+K ++ P+ IHF N Sbjct: 8 KQRYSLGDILFFIIIYVVFTVLTIACIYPFYFLIINTLTANDISSKAAVLLLPQKIHFDN 67 Query: 84 YVDVFKIPGLWNAFVISIGRTVIGTILTVGASAFLGFMFAQEDMWGKKFWYRFTIITMFF 143 Y+ + + GL +A ++S+ RT+IG LTV ASAFLG++F +++MWG+KFWYRF I+TM+F Sbjct: 68 YLKILNLNGLTDALIVSVARTIIGAALTVFASAFLGYLFTKKEMWGRKFWYRFVIVTMYF 127 Query: 144 NAGIIPWYLTMRSLHLTNNFLAYILPSIVAPFFIILVKTFVESTPKELQQAASIDGAGTF 203 NAG+IPWY+TM +L L NNFLAYILP+IVAPF IILVKT++E+TP+ LQ+AA IDGAG F Sbjct: 128 NAGLIPWYITMLNLGLRNNFLAYILPAIVAPFNIILVKTYIENTPQALQEAAQIDGAGYF 187 Query: 204 TIFYKVILPISKPILATVAIFSAVNQWNSFQDTLLLVTDSKLYSLQFILYNYINQASSLS 263 TIF KV+ P+ PILATV IF+AV QWNSF DTLLL+TDS LY+LQFILY Y+NQASSL+ Sbjct: 188 TIFIKVVWPLCVPILATVTIFAAVGQWNSFTDTLLLMTDSHLYTLQFILYRYLNQASSLA 247 Query: 264 TMVNLQNAG-STAIASLSTKQTTTSIRMTVTIIVVAPILLVYPIFQRFFVKGIIIGAVKG 322 +++ AG ++SL+ QT S+RMTV+++V+ PIL VYP FQRFFV GIIIGAVKG Sbjct: 248 SIMRNSGAGIGQQVSSLAGSQTAQSVRMTVSVVVILPILFVYPFFQRFFVGGIIIGAVKG 307 >C2AXC9.1 C2AXC9_9MICO Carbohydrate ABC transporter membrane protein 2, CUT1 family Length = 305 Score = 370 bits (950), Expect = e-101, Method: Compositional matrix adjust. Identities = 175/302 (57%), Positives = 228/302 (75%) Query: 21 KKIKMQVSATDKMISVTIYIVFSLFAFICVYPFYSIIINTISANDLSAKGEIVFWPKGIH 80 + I +Q D++ + Y+ F+LFA +C YPF+ +++N++SANDLSA G+I WP+G+H Sbjct: 4 RSIPVQREKGDRVFAGWNYLWFALFALLCAYPFWYLVVNSVSANDLSAAGDIRLWPRGLH 63 Query: 81 FQNYVDVFKIPGLWNAFVISIGRTVIGTILTVGASAFLGFMFAQEDMWGKKFWYRFTIIT 140 NY + ++ GL A ++S+ RTVIGT TV ASAFLGFMF QE MW + WYR +IT Sbjct: 64 LSNYSQILQLNGLSTAAIVSVARTVIGTAATVLASAFLGFMFTQERMWKRSLWYRLVVIT 123 Query: 141 MFFNAGIIPWYLTMRSLHLTNNFLAYILPSIVAPFFIILVKTFVESTPKELQQAASIDGA 200 M+FNAG+IP Y+TM++L LTN+F YILP+IV PF +ILVKT++ES P+ LQ+AA +DGA Sbjct: 124 MYFNAGLIPVYVTMKTLGLTNSFWVYILPAIVQPFNVILVKTYIESLPRSLQEAAEVDGA 183 Query: 201 GTFTIFYKVILPISKPILATVAIFSAVNQWNSFQDTLLLVTDSKLYSLQFILYNYINQAS 260 T IF+ +ILP + PILATVAIFSAV QWNSFQDTLL +TD KLYSLQ++LY +INQAS Sbjct: 184 STLRIFFSIILPNTTPILATVAIFSAVAQWNSFQDTLLYITDQKLYSLQYLLYMFINQAS 243 Query: 261 SLSTMVNLQNAGSTAIASLSTKQTTTSIRMTVTIIVVAPILLVYPIFQRFFVKGIIIGAV 320 SL+ IAS +T QT TSIRMTV +IVV PI+ VYP+FQR+FVKGI++GAV Sbjct: 244 SLAQAAQNAQGNLGIIASAATSQTPTSIRMTVAVIVVLPIVFVYPLFQRYFVKGIMLGAV 303 Query: 321 KG 322 KG Sbjct: 304 KG 305 >A9KQK9.1 A9KQK9_CLOPH Binding-protein-dependent transport systems inner membrane component Length = 330 Score = 303 bits (777), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 145/310 (46%), Positives = 218/310 (70%), Gaps = 4/310 (1%) Query: 14 DHNSRYSKKIKMQVSATDKMISVTIYIVFSLFAFICVYPFYSIIINTISANDLSAKGEIV 73 ++ ++ K+ KM V D + + + F +F F C++PFY I INT+S NDL KG + Sbjct: 24 EYEKKHKKRFKMTVK--DLIFEIINHSFFLIFTFACIFPFYYIFINTVSDNDLVRKGAVN 81 Query: 74 FWPKGIHFQNYVDVFKIPGLWNAFVISIGRTVIGTILTVGASAFLGFMFAQEDMWGKKFW 133 F P+G H +NY+ + + L + +++ RT+IGTIL V AS F+G++ + +MWG+K W Sbjct: 82 FIPQGFHIKNYLALANVNDLITSLTVTLSRTIIGTILMVVASGFVGYLVTKNEMWGRKIW 141 Query: 134 YRFTIITMFFNAGIIPWYLTMRSLHLTNNFLAYILPSIVAPFFIILVKTFVESTPKELQQ 193 YRF ++TM+FNAG+IPWY+ M L LT+NFLAYI+P IVAP+ IILVKT++ES P EL++ Sbjct: 142 YRFIVVTMYFNAGLIPWYINMSMLGLTDNFLAYIIPGIVAPYNIILVKTYIESIPAELEE 201 Query: 194 AASIDGAGTFTIFYKVILPISKPILATVAIFSAVNQWNSFQDTLLLVTDS-KLYSLQFIL 252 +A IDGA T+F K+I P+SKPILAT+AIF AV WNSF D+L+L+ ++ +L++LQ L Sbjct: 202 SAQIDGASYMTVFRKIIWPLSKPILATIAIFGAVGNWNSFMDSLILMPNAPQLHTLQHKL 261 Query: 253 YNYINQASSLSTMVNLQNAGSTAIASLSTKQTTTSIRMTVTIIVVAPILLVYPIFQRFFV 312 Y+Y+N A++L +++ + A L+ +I+ T++++ + PILLVYP QR+F Sbjct: 262 YSYLNAATNLKGVMSSGGGSVSGSA-LNNILNAKTIKYTISMVTIIPILLVYPFMQRYFE 320 Query: 313 KGIIIGAVKG 322 KGI++GAVKG Sbjct: 321 KGIMLGAVKG 330 >B3KDQ6.1 B3KDQ6_9BACI Binding-protein-dependent transport systems inner membrane component Length = 302 Score = 219 bits (557), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 117/304 (38%), Positives = 188/304 (61%), Gaps = 11/304 (3%) Query: 22 KIKMQVSATDKMISVTIYIVFSLFAFICVYPFYSIIINTISANDL--SAKGEIVFWPKGI 79 K + S +D++ + + + +L + +YPF +++ IS ND + +G I WP+ Sbjct: 5 KAAFKPSLSDRVFDIANFTIMALVMIVTLYPFLNVL--AISLNDSVDTVRGGIYIWPREF 62 Query: 80 HFQNYVDVFKIPGLWNAFVISIGRTVIGTILTVGASAFLGFMFAQEDMWGKKFWYRFTII 139 NYV +FK GL +I RT+ GT L + + LG++ ++ D G+KF F + Sbjct: 63 TLDNYVQIFKYDGLVTGAKNTILRTLAGTFLGLLSGTMLGYVLSRVDFQGRKFMSTFLAL 122 Query: 140 TMFFNAGIIPWYLTMRSLHLTNNFLAYILPSIVAPFFIILVKTFVESTPKELQQAASIDG 199 TM+F+ G+IP ++ +R L++ N+FL YI+P +V+ F + ++++F++S P LQ++A +DG Sbjct: 123 TMYFSGGMIPVFILIRDLNMMNSFLVYIIPGMVSAFNVFVIRSFIDSLPYSLQESAKLDG 182 Query: 200 AGTFTIFYKVILPISKPILATVAIFSAVNQWNSFQDTLLLVTDS-KLYSLQFILYNYINQ 258 A FTI+YK+ILP+ KP+LAT+A+F AV QWNS+ DT L ++ L +LQF L + Sbjct: 183 ANDFTIYYKIILPLCKPVLATIALFLAVGQWNSWLDTYLYNGNAPHLTTLQFELMKVLQS 242 Query: 259 A-SSLSTMVNLQNAGSTAIASLSTKQTTTSIRMTVTIIVVAPILLVYPIFQRFFVKGIII 317 S M+ QN +A + + + SI+M +TI+V PILLVYP QR+FVKG+ + Sbjct: 243 TQGQTSGMMTGQN-----MAEIVKQVSPESIKMAITIVVTVPILLVYPFLQRYFVKGMTL 297 Query: 318 GAVK 321 GAVK Sbjct: 298 GAVK 301 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.139 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,690,972,388 Number of extensions: 65341529 Number of successful extensions: 307173 Number of sequences better than 1.0e-05: 5751 Number of HSP's gapped: 299535 Number of HSP's successfully gapped: 5751 Length of query: 322 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 186 Effective length of database: 1,779,438,163 Effective search space: 330975498318 Effective search space used: 330975498318 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)