BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0284.0022.p (304 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1S931.1 B1S931_9BIFI Putative uncharacterized protein 361 6e-98 B8I620.1 B8I620_CLOCE Binding-protein-dependent transport system... 343 9e-93 C2AXD0.1 C2AXD0_9MICO Carbohydrate ABC transporter membrane prot... 325 4e-87 A9KQK8.1 A9KQK8_CLOPH Binding-protein-dependent transport system... 324 7e-87 B8DZ08.1 B8DZ08_DICTD Binding-protein-dependent transport system... 224 1e-56 >B1S931.1 B1S931_9BIFI Putative uncharacterized protein Length = 345 Score = 361 bits (926), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 176/298 (59%), Positives = 221/298 (74%) Query: 7 KTNSIRKFLYISPFMVLLAVFAYYPLYGWVYAFFDYMPPIPLSQAPFVGLKWFRSLVENQ 66 K + + FL ISPF++L +F+Y PL+GWVYAF+DY PPIPLSQ+ FVGL+WF+ +V+N Sbjct: 48 KRHGFKLFLLISPFLILSVLFSYLPLFGWVYAFYDYQPPIPLSQSEFVGLQWFKMMVQNP 107 Query: 67 VKVDQLLQVIKNTFGMSGLSILFSWLPMIFAIFLTEIKAVRFRKFIQTVTTLPNFISWVL 126 ++ + QV+ NTF MSGL+IL S+ P+ FAI L EI+A FR IQT+TTLPNFISWVL Sbjct: 108 AQLQTIGQVLINTFAMSGLNILTSFFPLFFAIALNEIRAKWFRNLIQTLTTLPNFISWVL 167 Query: 127 VYSLAFSMFSSEGVVNGFLSQLGLTDSPVLFLQNSDHVWITMWIWATWKTLGWSAILYIA 186 VY++AF+MFS+ G++N L L + P+ FL + H W+ M +W WK LGW +I+Y+A Sbjct: 168 VYAVAFAMFSTTGMLNEMLQNLHIISEPIKFLDSDSHTWLKMLLWGLWKGLGWGSIMYLA 227 Query: 187 AIMSIDESLYEAAYVDGATRMQVIRHVVLPSMLPTYFVLLMLQIASFLNNGLEQYFVFQN 246 I ID LYEAA VDGA R Q I HV +P +LPTYFVLLML I++FLNNG++QYFVFQN Sbjct: 228 GIAGIDPELYEAAQVDGANRFQQIVHVTIPQLLPTYFVLLMLSISNFLNNGMDQYFVFQN 287 Query: 247 AFNKDTIQVLDLYVYNLAMGGGSYSVSVAISMLKSLISVVLLFSVNGLSKMLRGEGIV 304 AFN IQVLDLYVYN+ MG S S + AISMLKSL+SV LL VN LSK RG IV Sbjct: 288 AFNTKHIQVLDLYVYNVGMGNNSLSYATAISMLKSLVSVGLLIVVNWLSKRTRGVSIV 345 >B8I620.1 B8I620_CLOCE Binding-protein-dependent transport systems inner membrane component Length = 316 Score = 343 bits (881), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 166/305 (54%), Positives = 227/305 (74%), Gaps = 5/305 (1%) Query: 5 SMKTNSIRK----FLYISPFMVLLAVFAYYPLYGWVYAFFDYMPPIPLSQAPFVGLKWFR 60 +K N R F PF++L +F+Y PLYGW+Y+ FDY PP L Q FVGLKW Sbjct: 12 KLKKNKHRDRFKLFFMALPFLILCFIFSYLPLYGWIYSLFDYRPPFKLYQCDFVGLKWIT 71 Query: 61 SLVENQVKVDQLLQVIKNTFGMSGLSILFSWLPMIFAIFLTEIKAVRFRKFIQTVTTLPN 120 S++ N + + V++NTF +SGL++L S LP+ FA+FL E+K F++ +Q +TTLPN Sbjct: 72 SIITNPAYRNAIGDVLRNTFAISGLNLLTSVLPLAFAVFLNEVKRGWFKRSVQILTTLPN 131 Query: 121 FISWVLVYSLAFSMFSS-EGVVNGFLSQLGLTDSPVLFLQNSDHVWITMWIWATWKTLGW 179 FISWVLVYS+AF FS+ +GVVN L + + SP+ FL + DH W+ M +W+ WKTLGW Sbjct: 132 FISWVLVYSVAFVFFSTGDGVVNKILINMDIISSPINFLASDDHTWLAMTLWSLWKTLGW 191 Query: 180 SAILYIAAIMSIDESLYEAAYVDGATRMQVIRHVVLPSMLPTYFVLLMLQIASFLNNGLE 239 SAI+Y+AAI ID+ LYEAA VDGA R +++ ++ +PS+LPT+FVLLML +A+FLNNGL+ Sbjct: 192 SAIMYLAAIAGIDQELYEAAKVDGAGRFRMMWNITIPSLLPTFFVLLMLSVANFLNNGLD 251 Query: 240 QYFVFQNAFNKDTIQVLDLYVYNLAMGGGSYSVSVAISMLKSLISVVLLFSVNGLSKMLR 299 QY+VFQNA NK IQVLDLYVYN+ +G ++ ++ A+SMLKS++S+VLLF+VNG+SK+LR Sbjct: 252 QYYVFQNAMNKAHIQVLDLYVYNIGVGSMNFPLATAVSMLKSIVSIVLLFTVNGVSKLLR 311 Query: 300 GEGIV 304 GE IV Sbjct: 312 GETIV 316 >C2AXD0.1 C2AXD0_9MICO Carbohydrate ABC transporter membrane protein 1, CUT1 family Length = 292 Score = 325 bits (832), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 151/278 (54%), Positives = 208/278 (74%) Query: 27 FAYYPLYGWVYAFFDYMPPIPLSQAPFVGLKWFRSLVENQVKVDQLLQVIKNTFGMSGLS 86 F+Y PL GW A FDY P + + + FVGL+WFR LV ++ +++Q+ QV+ NT MS L Sbjct: 15 FSYLPLAGWATALFDYKPALGIGGSEFVGLQWFRMLVSSRTQLEQIGQVMANTLAMSFLG 74 Query: 87 ILFSWLPMIFAIFLTEIKAVRFRKFIQTVTTLPNFISWVLVYSLAFSMFSSEGVVNGFLS 146 I S LP+ FA+ L E++A FR +QT+TTLPNFISWVLVY++AFS+FS+ G+VN L+ Sbjct: 75 IATSLLPLFFAMLLNEVRAKWFRNAVQTLTTLPNFISWVLVYAIAFSLFSTSGLVNSTLA 134 Query: 147 QLGLTDSPVLFLQNSDHVWITMWIWATWKTLGWSAILYIAAIMSIDESLYEAAYVDGATR 206 GL P+ FL + +HVW+TM +W+ WK LGW AI+Y+AAI ID +LYE+A +DGA R Sbjct: 135 DWGLITMPIKFLDSGEHVWLTMLLWSLWKGLGWGAIMYLAAIAGIDPTLYESARIDGANR 194 Query: 207 MQVIRHVVLPSMLPTYFVLLMLQIASFLNNGLEQYFVFQNAFNKDTIQVLDLYVYNLAMG 266 Q++R++ P ++PTY VLLML IA+ LNNG+EQY+VFQNAFNK IQVLDLYVYN+ + Sbjct: 195 FQLMRYITFPQLMPTYIVLLMLSIANILNNGMEQYYVFQNAFNKQHIQVLDLYVYNIGLT 254 Query: 267 GGSYSVSVAISMLKSLISVVLLFSVNGLSKMLRGEGIV 304 G S S++ +SMLKS++SV+LL + NG++K +RG I+ Sbjct: 255 GNSLSMAAVLSMLKSIVSVLLLLAANGIAKRVRGTSII 292 >A9KQK8.1 A9KQK8_CLOPH Binding-protein-dependent transport systems inner membrane component Length = 478 Score = 324 bits (830), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 153/303 (50%), Positives = 216/303 (71%), Gaps = 1/303 (0%) Query: 2 RSYSMKTNSIRKFLYISPFMVLLAVFAYYPLYGWVYAFFDYMPPIPLSQAPFVGLKWFRS 61 Y M+T + FL I PF++L VF+Y PL+GW YAFFDY LS FVG KWF Sbjct: 177 EKYEMETK-YKLFLLIMPFLILCFVFSYLPLFGWRYAFFDYKAGDSLSLDNFVGFKWFTY 235 Query: 62 LVENQVKVDQLLQVIKNTFGMSGLSILFSWLPMIFAIFLTEIKAVRFRKFIQTVTTLPNF 121 L +N+ +++V++NT MSGL + SW M FAIFL EIK++R R+FIQT+TT+PNF Sbjct: 236 LFQNKSTRGDIVRVLRNTLAMSGLGLATSWCAMAFAIFLCEIKSLRLRRFIQTITTIPNF 295 Query: 122 ISWVLVYSLAFSMFSSEGVVNGFLSQLGLTDSPVLFLQNSDHVWITMWIWATWKTLGWSA 181 ISWVLV+++AFS+FS++G ++ L + G+ D+ V +L +++H+W+ M W WK LGWSA Sbjct: 296 ISWVLVFAVAFSIFSTDGFLSSILIKYGVIDNGVNYLMSNNHMWLKMLAWGMWKGLGWSA 355 Query: 182 ILYIAAIMSIDESLYEAAYVDGATRMQVIRHVVLPSMLPTYFVLLMLQIASFLNNGLEQY 241 I+YIAAI ID+ L+EAA VDGA R Q + H+ +PS+LPT+ VLL++ IA L+NG++QY Sbjct: 356 IIYIAAISGIDQQLFEAATVDGAGRFQRMWHITVPSLLPTFLVLLVMAIAGILSNGMDQY 415 Query: 242 FVFQNAFNKDTIQVLDLYVYNLAMGGGSYSVSVAISMLKSLISVVLLFSVNGLSKMLRGE 301 VFQNA+N DT+ VLDLYVY L + G ++ + M KS++S++LLF N +SK++RG Sbjct: 416 LVFQNAYNTDTVTVLDLYVYKLGINNGKIPLATVVGMAKSIVSIILLFGANKVSKIIRGN 475 Query: 302 GIV 304 I+ Sbjct: 476 SII 478 >B8DZ08.1 B8DZ08_DICTD Binding-protein-dependent transport systems inner membrane component Length = 304 Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 115/303 (37%), Positives = 192/303 (63%), Gaps = 7/303 (2%) Query: 5 SMKTNSIRKFLYIS--PFMVLLAVFAYYPLYGWVYAFFDYMPPIPLSQAPFVGLKWFRSL 62 ++KT +K+L I PF++ L +F Y PL+GW+ AF +Y P +P+ Q +VGLK+F+ + Sbjct: 6 TLKTIKKQKYLIIMVLPFVIWLIIFRYVPLWGWITAFQNYKPGLPIFQQQWVGLKYFKEM 65 Query: 63 VENQVKVDQLLQVIKNTFGMSGLSILFSW-LPMIFAIFLTEIKAVRFRKFIQTVTTLPNF 121 + + V++NT MS LS++F + LP+I AI + EI+ F++ +QT++ LP+F Sbjct: 66 FSD----PEFYLVMRNTLAMSILSLIFGFPLPIILAILINEIRCTAFKRTVQTISYLPHF 121 Query: 122 ISWVLVYSLAFSMFSSEGVVNGFLSQLGLTDSPVLFLQNSDHVWITMWIWATWKTLGWSA 181 +SWV+V S+ +M + +GVVN L +LGL P+LF + W + WK +GW+ Sbjct: 122 VSWVIVASIVHAMLAPDGVVNYLLLRLGLIKQPILFFGEPKYFWWIVVFSDIWKEVGWNT 181 Query: 182 ILYIAAIMSIDESLYEAAYVDGATRMQVIRHVVLPSMLPTYFVLLMLQIASFLNNGLEQY 241 I+++AA+ SI+ LYEAA VDGA+R + I H+ LP ++PT ++L+L I + +N G E+ Sbjct: 182 IIFLAAMTSINPELYEAAEVDGASRFRKIWHITLPGIMPTVIMILILSIGNIINIGFERQ 241 Query: 242 FVFQNAFNKDTIQVLDLYVYNLAMGGGSYSVSVAISMLKSLISVVLLFSVNGLSKMLRGE 301 F+ + + ++ V+DLY + + G +S A + KS+IS++LLFS N ++K + G Sbjct: 242 FLLRTSAVRNVSDVIDLYALDYGIRAGRFSFGTAAGIFKSVISLILLFSANKITKKVTGY 301 Query: 302 GIV 304 I+ Sbjct: 302 RII 304 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.140 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,723,028,033 Number of extensions: 67814767 Number of successful extensions: 261581 Number of sequences better than 1.0e-05: 4499 Number of HSP's gapped: 260121 Number of HSP's successfully gapped: 4500 Length of query: 304 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 169 Effective length of database: 1,788,859,178 Effective search space: 302317201082 Effective search space used: 302317201082 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)