BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0284.0018.p
         (53 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DAV1.1 B1DAV1_9BACL Putative uncharacterized protein                 83   8e-15
B0MMM4.1 B0MMM4_9FIRM Putative uncharacterized protein                 67   5e-10

>B1DAV1.1 B1DAV1_9BACL Putative uncharacterized protein
          Length = 66

 Score = 82.8 bits (203), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 45/52 (86%)

Query: 2  TDDVAIYLKLVTRGAQDFLCIGCLGEQLKCGREPIEQLIQYFRKSGNCVLFR 53
           D+ AIY+KLV+R AQ FLC+ CLG +L CGREP+E+LI+YFR+SGNCVLFR
Sbjct: 15 ADEKAIYMKLVSRTAQQFLCMDCLGAKLNCGREPLEKLIRYFRESGNCVLFR 66


>B0MMM4.1 B0MMM4_9FIRM Putative uncharacterized protein
          Length = 67

 Score = 67.0 bits (162), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 35/51 (68%)

Query: 3  DDVAIYLKLVTRGAQDFLCIGCLGEQLKCGREPIEQLIQYFRKSGNCVLFR 53
          DD+AIY KLVTR A +F CI CL E     RE IE+ I Y+RKSG C LFR
Sbjct: 17 DDIAIYRKLVTRNADEFFCIDCLAEYYNTTREVIEERIAYYRKSGECTLFR 67


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.331    0.148    0.466 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 286,861,288
Number of extensions: 7135580
Number of successful extensions: 15451
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 15451
Number of HSP's successfully gapped: 2
Length of query: 53
Length of database: 3,060,696,203
Length adjustment: 26
Effective length of query: 27
Effective length of database: 2,815,749,813
Effective search space: 76025244951
Effective search space used: 76025244951
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 125 (52.8 bits)