BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0284.0017.p (262 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DAV0.1 B1DAV0_9BACL Transcriptional regulator, AraC family 306 1e-81 C0FY41.1 C0FY41_9FIRM Putative uncharacterized protein 186 2e-45 A9KN44.1 A9KN44_CLOPH Transcriptional regulator, AraC family 179 2e-43 A7AYN3.1 A7AYN3_RUMGN Putative uncharacterized protein 170 1e-40 C4ZBG0.1 C4ZBG0_9FIRM Transcriptional regulator, AraC family 165 3e-39 >B1DAV0.1 B1DAV0_9BACL Transcriptional regulator, AraC family Length = 267 Score = 306 bits (784), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 147/248 (59%), Positives = 184/248 (74%), Gaps = 3/248 (1%) Query: 4 ICKAHGYKPPNLHKWGPGVRDVYALHYIVSGKGYLKTGHTTFPVETGESFIIFPHREVYY 63 IC GYKP N HKWGPGVRD+YALH+I+SGKG L+T + +P+ TG+SF+IFP E+YY Sbjct: 13 ICTYSGYKPANRHKWGPGVRDIYALHFIISGKGTLETNNQQYPLSTGDSFMIFPKTEIYY 72 Query: 64 YPDPQDPWEYFWIEFNNGAETARLLSMIDFAPDSPVVKASPQDFKPLFHMVTTGGLEPFE 123 YPDP+DPWEY WIEF G E RL++M D PVV A P D KP F V FE Sbjct: 73 YPDPEDPWEYVWIEFK-GDEAKRLIAMTGLESDKPVVAACPADLKPYFPQVVGADTRHFE 131 Query: 124 RERSDAGLHLLLSYYMEHYPSNKAFRKKDYVLSAREYIESNFWKASLSVLDVVEYVKIER 183 + R++A L LLLSYY+E YP + + DYV A+EYI N+W+ +L+V D+V V +ER Sbjct: 132 KMRTEAQLRLLLSYYVEFYP--REAQPIDYVQLAKEYIMINYWRTTLTVSDIVNAVSLER 189 Query: 184 SYLFRLFKEATGTSISGYLTDFRIQRACELLTTSQLSVKSLAYSVGYQDPMYFSKVFKKA 243 SYLFRLFKEA+G S+SGY+T +R++RA ELL +S LS+KS+A SVGY+D +YFSKVFKKA Sbjct: 190 SYLFRLFKEASGMSVSGYMTAYRMERARELLMSSGLSIKSVACSVGYKDQLYFSKVFKKA 249 Query: 244 TSYTPSEY 251 TSYTPSEY Sbjct: 250 TSYTPSEY 257 >C0FY41.1 C0FY41_9FIRM Putative uncharacterized protein Length = 279 Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 98/244 (40%), Positives = 149/244 (61%), Gaps = 8/244 (3%) Query: 15 LHKWGPGVRDVYALHYIVSGKGYLKTGHTTFPVETGESFIIFPHREVYYYPDPQDPWEYF 74 L++WGPG+RD Y +HYI+SGKGY K +TTF ++TG+SF+++P+ EV Y+ D DPWEY Sbjct: 32 LYQWGPGIRDHYLIHYIISGKGYYKIKNTTFTLQTGDSFLVYPNTEVLYFADETDPWEYA 91 Query: 75 WIEFNNGAETARLLSMIDFAPDSPVVKASPQD---FKPLFHMVTTGGLEPFERERSDAG- 130 W+ F G++ + +L DF+ + PV++ +P + + H+ G E FE G Sbjct: 92 WVGF-TGSDASMILKATDFSTERPVIEHTPLGESIHRQILHIYDARGNE-FEHAVEMTGR 149 Query: 131 LHLLLSYYMEHYPSNKAFRKKD-YVLSAREYIESNFWKASLSVLDVVEYVKIERSYLFRL 189 L+ +L+ +M +N + YV EYI SN+ ++V D+ YV + RS LFR Sbjct: 150 LYTMLALFMHGATTNTTQNSANSYVQKGIEYISSNY-SYHITVEDISAYVGLSRSQLFRS 208 Query: 190 FKEATGTSISGYLTDFRIQRACELLTTSQLSVKSLAYSVGYQDPMYFSKVFKKATSYTPS 249 F+ G S YLTDFR+++AC LL S LSV ++A S+G+ + +YFSK F K +PS Sbjct: 209 FESVLGQSPKEYLTDFRMKQACYLLEHSDLSVTAIANSIGFDNGLYFSKTFHKMKEMSPS 268 Query: 250 EYKK 253 E++ Sbjct: 269 EFRN 272 >A9KN44.1 A9KN44_CLOPH Transcriptional regulator, AraC family Length = 278 Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 97/246 (39%), Positives = 149/246 (60%), Gaps = 8/246 (3%) Query: 13 PNLHKWGPGVRDVYALHYIVSGKGYLKTGHTTFPVETGESFIIFPHREVYYYPDPQDPWE 72 PN ++WGPGVRD Y +HYIVSGKGY +T H TFP+ +G+ F+I+P +V YY D DPWE Sbjct: 33 PN-YQWGPGVRDHYLIHYIVSGKGYYETNHKTFPLTSGDVFLIYPDTQVTYYADALDPWE 91 Query: 73 YFWIEFNNGAETARLLSMIDFAPDSPVVKASP--QDFKPLFHMVTTGGLEPFERERSDAG 130 Y+W+ F +G++ +L DF+ +SPV+ + + K + + F + AG Sbjct: 92 YYWVGF-SGSDAGLILEATDFSNESPVISSCSYGEKVKDQLYQIYEARGNEFANAVAMAG 150 Query: 131 -LHLLLSYYMEHYPSN--KAFRKKDYVLSAREYIESNFWKASLSVLDVVEYVKIERSYLF 187 L++ LS ++ ++ K + DYV Y+ES+F +++ DV YV I RS+LF Sbjct: 151 QLYITLSLFLSGASNHNKKHHQNLDYVQKGITYMESHF-SYPITIDDVAAYVGISRSHLF 209 Query: 188 RLFKEATGTSISGYLTDFRIQRACELLTTSQLSVKSLAYSVGYQDPMYFSKVFKKATSYT 247 R FK G S YL+++RI+ +C LL + LS+ ++A SVGY + +Y+SKVF+ Sbjct: 210 REFKAHLGKSPKEYLSEYRIKYSCTLLKNTDLSIGAIATSVGYDNGLYYSKVFQSVKGMP 269 Query: 248 PSEYKK 253 PS+Y+ Sbjct: 270 PSKYRN 275 >A7AYN3.1 A7AYN3_RUMGN Putative uncharacterized protein Length = 285 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 99/246 (40%), Positives = 142/246 (57%), Gaps = 12/246 (4%) Query: 16 HKWGPGVRDVYALHYIVSGKGYLKTGHTTFPVETGESFIIFPHREVYYYPDPQDPWEYFW 75 +WGPG+RD Y +H+I+SGKG + + G+SFI++P EV YY DP DPWEY W Sbjct: 40 QQWGPGIRDHYCIHHIISGKGTYVADKKVYHLGEGDSFILYPDTEVKYYADPDDPWEYAW 99 Query: 76 IEFNNGAETARLLSMIDFAPDSPVVKAS--PQD--FKPLFHMVTTGGLEPFERERSDAGL 131 F G + A ++ DFA PV+ P D ++ L + G L Sbjct: 100 AGFM-GTDAAVMVRATDFARKRPVIGRDKIPGDLIWRQLEQIYQVRGTTYEAAAAMTGAL 158 Query: 132 HLLLSYYMEHYPSNKAFRKKD----YVLSAREYIESNFWKASLSVLDVVEYVKIERSYLF 187 + +LS ++ HY + K +K D YV A++YI S++ ++V DV +Y I RSYLF Sbjct: 159 YTMLSVFI-HY-AEKEEKKDDLRQVYVERAKDYIASSY-SYPITVEDVADYTGISRSYLF 215 Query: 188 RLFKEATGTSISGYLTDFRIQRACELLTTSQLSVKSLAYSVGYQDPMYFSKVFKKATSYT 247 R F+ S YLT++RI++AC LL + LSV S+AYSVG++D +YFSK FKK + Sbjct: 216 RAFQAYQKQSPKEYLTEYRIRQACHLLRETGLSVASIAYSVGFEDNLYFSKAFKKKMQMS 275 Query: 248 PSEYKK 253 PS+Y+K Sbjct: 276 PSQYRK 281 >C4ZBG0.1 C4ZBG0_9FIRM Transcriptional regulator, AraC family Length = 279 Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 92/250 (36%), Positives = 136/250 (54%), Gaps = 14/250 (5%) Query: 14 NLHKWGPGVRDVYALHYIVSGKGYLKTGHTTFPVETGESFIIFPHREVYYYPDPQDPWEY 73 +L++WGPG+RD Y +HYI+SGKG + + G++F+++P+ EV Y D QDPWEY Sbjct: 31 SLYQWGPGIRDHYLIHYIISGKGRYTVNGSVHTLTPGDAFLVYPNTEVIYQADAQDPWEY 90 Query: 74 FWIEFNNGAETARLLSMIDFAPDSPVVKASPQDF---KPLFHMVTTGGLEPFERERSDAG 130 W+ F G++ A +L DF P + + + L H+ G E FE G Sbjct: 91 TWVGFT-GSDAATILRATDFTKAHPYIHSVSNGNEIKRQLMHIYDARGTE-FENALEMTG 148 Query: 131 -----LHLLLSYYMEHYPSNKAFRKKDYVLSAREYIESNFWKASLSVLDVVEYVKIERSY 185 L L +S P N A YV EYI +N+ ++V D+ Y+ + RS+ Sbjct: 149 RLYTTLALFVSAATSKPPQNSA---NSYVQKGIEYISANY-SYPITVEDIASYIGLSRSH 204 Query: 186 LFRLFKEATGTSISGYLTDFRIQRACELLTTSQLSVKSLAYSVGYQDPMYFSKVFKKATS 245 LFR F+ G S YLTDFRI++AC LL S LS+ ++A S+G+ + +YFSK F K Sbjct: 205 LFRSFQSILGVSPKEYLTDFRIKQACYLLKHSSLSITAIAGSIGFDNSLYFSKTFHKIKG 264 Query: 246 YTPSEYKKAF 255 +P EY+ + Sbjct: 265 LSPKEYRSKY 274 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,660,743,478 Number of extensions: 68288873 Number of successful extensions: 171671 Number of sequences better than 1.0e-05: 3715 Number of HSP's gapped: 171672 Number of HSP's successfully gapped: 3726 Length of query: 262 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 129 Effective length of database: 1,807,701,208 Effective search space: 233193455832 Effective search space used: 233193455832 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)