BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0284.0015.p (361 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DBI2.1 B1DBI2_9BACL Two component transcriptional regulator, A... 193 2e-47 B3KA98.1 B3KA98_9BACI Response regulator receiver 178 6e-43 C3J4I4.1 C3J4I4_9BACI Two component transcriptional regulator, A... 105 7e-21 B7YAV5.1 B7YAV5_9BACI Two component transcriptional regulator, A... 105 7e-21 B1DHJ8.1 B1DHJ8_9BACL Two component transcriptional regulator, A... 104 1e-20 >B1DBI2.1 B1DBI2_9BACL Two component transcriptional regulator, AraC family Length = 533 Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 113/356 (31%), Positives = 186/356 (52%), Gaps = 2/356 (0%) Query: 5 LQKGIPYLPVLAIPDRSYELERRFGGIVNMQFVMDNVLQEFL-EID-GIIQFALTERQXX 62 Q G LPV + ++ RF + F + NV++E L E+ ++ + RQ Sbjct: 177 FQPGELCLPVAGFIESYNLIKNRFDSDQTLHFAISNVMEELLIELPLRVVHIGYSSRQSL 236 Query: 63 XXXXXXXXXXXNLYEDFRNKFLHVQKMSKLHLRMGISFFYGDATPSLIEIKKQILALLDS 122 N+Y+ + VQ+ L++ ++F G + +K+ + LL + Sbjct: 237 LLFAFKPGLKQNVYDQVQASLQTVQRTLGQVLKIQMAFLIGTGCDNPQLLKQALCNLLKA 296 Query: 123 HALRFYTAEGAIMKLEPVKTTNEDLFIHYSEILQQLRDCIQNEDSSRVSAAVADIKNDIG 182 RFY ++G K + + L Y + ++R+ I +DS +V + I Sbjct: 297 DEQRFYLSKGETAKWQKGAQHSSGLLAMYDQAAAEIREAIMAKDSDKVRTLAGKWETHIR 356 Query: 183 AMKYPVESVKSWLLKMVMELELKYIVMQNFVNNFNSERHQRSIREFETLDQLMEWLEEFL 242 +Y E V+ W+LK+++++ LK M +E+ + I F++L L EW L Sbjct: 357 KEQYASEEVRDWVLKLLIDMRLKLHAMLFASQTLTAEKLHKEIVYFDSLWGLFEWFHTQL 416 Query: 243 KDKILMLRSIWKQNVRKEVAEAKRYVMNHIGEKVGMDEMARRLGLNPTHFSRLFKVETGL 302 + I + R+EV+EA++YV ++G+++ ++E+A L +NP++FSR FK ETGL Sbjct: 417 QSYIAAREEALPVSKRREVSEARKYVSMNLGKRISLEEVAAHLHMNPSYFSRFFKKETGL 476 Query: 303 TFIEYVTKLKMERAQDLLNQTNSTIVEIAEQLAYDNVSYFIKLFRNFSGMTPVEYR 358 TFIEYVT K+ERA++LL+QTN + EI E L YDN SYFIK F+ +G+TP EYR Sbjct: 477 TFIEYVTDQKIERAKELLDQTNYYVSEICEMLGYDNQSYFIKTFKAQTGLTPTEYR 532 >B3KA98.1 B3KA98_9BACI Response regulator receiver Length = 540 Score = 178 bits (452), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 116/362 (32%), Positives = 197/362 (54%), Gaps = 8/362 (2%) Query: 5 LQKGIPYLPVLAIPDRSYELERRFGGIVNMQFVMDNVLQEFLEI--DGIIQFALTERQXX 62 L+ G LP + + E++ RF + F + NVL+E L+ + + Sbjct: 177 LKPGYHCLPAVGHLEDVREIKHRFASNQTLHFALGNVLREVLDQLNPDAVHVLYDAKSSL 236 Query: 63 XXXXXXXXXXXNLYEDFRNKFLHVQKMSKLHLRMGISFFYGDATPSLIEIKKQILALLDS 122 N+Y++ VQ+ + LR+ +SF G +K + LL S Sbjct: 237 LLFAYRPGLGSNIYDEAAACLKEVQRTLERVLRIRMSFLIGRGCADPEGLKAGLNELLAS 296 Query: 123 HALRFYTAEGAIMKL-----EPVKTTNEDLFIHYSEILQQLRDCIQNEDSSRVSAAVAD- 176 RFY I KL + + DLF++Y +LR+ + ++ S + D Sbjct: 297 RHQRFYLEPLEISKLNGALEQKSLHGDPDLFVYYDRASSELRESLLGKEGSGAARDTVDR 356 Query: 177 IKNDIGAMKYPVESVKSWLLKMVMELELKYIVMQNFVNNFNSERHQRSIREFETLDQLME 236 + I +Y ESVK W+LK++++L+L+ ++ + + ++ + I + ++L++L Sbjct: 357 WISWIQGKRYAPESVKDWVLKLLLDLKLRLHLLHSLSPAYTADALHKEIMDMDSLNELKS 416 Query: 237 WLEEFLKDKILMLRSIWKQNVRKEVAEAKRYVMNHIGEKVGMDEMARRLGLNPTHFSRLF 296 WL ++L+ + + + + R EVAEA +YV + +++ +D++A L LNP++FSR+F Sbjct: 417 WLHDYLESTMQAMDRGFGGSRRSEVAEACKYVSLRLDQRITLDDVAGCLHLNPSYFSRMF 476 Query: 297 KVETGLTFIEYVTKLKMERAQDLLNQTNSTIVEIAEQLAYDNVSYFIKLFRNFSGMTPVE 356 K ETG+TFIEYVT++KMERA++LL QT+ T+ EI E LAYDNVSYF K F+ ++G+TPVE Sbjct: 477 KKETGVTFIEYVTRMKMERAKELLRQTDRTVGEICESLAYDNVSYFSKTFKAYAGVTPVE 536 Query: 357 YR 358 +R Sbjct: 537 FR 538 >C3J4I4.1 C3J4I4_9BACI Two component transcriptional regulator, AraC family Length = 513 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 103/169 (60%), Gaps = 15/169 (8%) Query: 194 WLLKMVMELELKYIVMQNFVNNFNSERHQRSIREFETLDQLMEWLEEFLKDKILMLRSIW 253 WL +++ EL ++Y + +F + ++ +R+ LD+L D+I +W Sbjct: 356 WLGRLLSELGIRYERLASFASCRSAAELKRA-----ALDEL---------DRIAADLEVW 401 Query: 254 KQN-VRKEVAEAKRYVMNHIGEKVGMDEMARRLGLNPTHFSRLFKVETGLTFIEYVTKLK 312 +Q ++ +AK Y+ H E + ++E+A + G++P +FS+LFK G+TFI+YVT ++ Sbjct: 402 RQQQAYGKLGKAKDYIDRHYAEPLTLEEVAEQAGISPYYFSKLFKEHFGITFIDYVTNVR 461 Query: 313 MERAQDLLNQTNSTIVEIAEQLAYDNVSYFIKLFRNFSGMTPVEYRKSI 361 +ERA++ L +T+ ++ EI + Y++ +YF ++F+ +G++P EYRK + Sbjct: 462 IERAKEALAETDQSLKEICFSVGYNDPNYFSRVFKKQTGLSPSEYRKKV 510 >B7YAV5.1 B7YAV5_9BACI Two component transcriptional regulator, AraC family Length = 513 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 103/169 (60%), Gaps = 15/169 (8%) Query: 194 WLLKMVMELELKYIVMQNFVNNFNSERHQRSIREFETLDQLMEWLEEFLKDKILMLRSIW 253 WL +++ EL ++Y + +F + ++ +R+ LD+L D+I +W Sbjct: 356 WLGRLLSELGIRYERLASFASCRSAAELKRA-----ALDEL---------DRIAADLEVW 401 Query: 254 KQN-VRKEVAEAKRYVMNHIGEKVGMDEMARRLGLNPTHFSRLFKVETGLTFIEYVTKLK 312 +Q ++ +AK Y+ H E + ++E+A + G++P +FS+LFK G+TFI+YVT ++ Sbjct: 402 RQQQAYGKLGKAKDYIDRHYAEPLTLEEVAEQAGISPYYFSKLFKEHFGITFIDYVTNVR 461 Query: 313 MERAQDLLNQTNSTIVEIAEQLAYDNVSYFIKLFRNFSGMTPVEYRKSI 361 +ERA++ L +T+ ++ EI + Y++ +YF ++F+ +G++P EYRK + Sbjct: 462 IERAKEALAETDQSLKEICFSVGYNDPNYFSRVFKKQTGLSPSEYRKKV 510 >B1DHJ8.1 B1DHJ8_9BACL Two component transcriptional regulator, AraC family Length = 536 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/269 (28%), Positives = 134/269 (49%), Gaps = 17/269 (6%) Query: 98 ISFFYGDATPSLIEIKKQILALLDSHALRFYTAEGAIMKLEPVKTTNEDLFIHYSEILQQ 157 +S + G T ++ E+ + LALL+ A G I +P+ T + + ++E + Sbjct: 272 LSCYVGQLT-AVTEVLQSYLALLNKEYRNVSMAGGVIWSEDPMSNTVKPA-VSFTESMLD 329 Query: 158 LRDCIQNEDSSRVSAAVADIKNDIGAMKYPVESVKS---WLLKMVM-ELELKYIVMQNFV 213 D ++ ++ +S + + N I K VE++ + LL+++ + K + Q Sbjct: 330 WADLLEQGSTTELSLKLKEWTNSIDPGKATVETLTASYHALLQVIYYAMHRKGLQAQQLY 389 Query: 214 NNFNS---ERHQRSIREFETLDQLMEWLEEFLKDKILMLRSIWKQNVRKEVAEAKRYVMN 270 N E RS+ +F+ + L + + + I V + K Y+ Sbjct: 390 ENHACSSVETATRSVVQFKLWVSCIAEAAGSLFTRTMTVSPI--------VQKVKAYIAE 441 Query: 271 HIGEKVGMDEMARRLGLNPTHFSRLFKVETGLTFIEYVTKLKMERAQDLLNQTNSTIVEI 330 H+ E++ +++A +NP + SRLF+ ETG+ +Y+ K +MERA +LL T+ +I EI Sbjct: 442 HLNEELSREQLASIAFVNPAYLSRLFRKETGMVLTDYILKERMERAAELLATTDRSISEI 501 Query: 331 AEQLAYDNVSYFIKLFRNFSGMTPVEYRK 359 A+ L+Y N SYF +LFR G+TP EYRK Sbjct: 502 ADGLSYGNFSYFARLFRKVHGVTPQEYRK 530 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.138 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,861,119,038 Number of extensions: 68479903 Number of successful extensions: 216753 Number of sequences better than 1.0e-05: 4879 Number of HSP's gapped: 217587 Number of HSP's successfully gapped: 4879 Length of query: 361 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 224 Effective length of database: 1,770,017,148 Effective search space: 396483841152 Effective search space used: 396483841152 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 132 (55.5 bits)