BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0284.0012.p (314 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DBH8.1 B1DBH8_9BACL Binding-protein-dependent transport system... 284 7e-75 B3KA94.1 B3KA94_9BACI Binding-protein-dependent transport system... 271 5e-71 B1DAC3.1 B1DAC3_9BACL Binding-protein-dependent transport system... 222 4e-56 B3K5Y6.1 B3K5Y6_9BACI Binding-protein-dependent transport system... 219 2e-55 B1D6F3.1 B1D6F3_9BACL Binding-protein-dependent transport system... 218 6e-55 >B1DBH8.1 B1DBH8_9BACL Binding-protein-dependent transport systems inner membrane component Length = 310 Score = 284 bits (727), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 142/314 (45%), Positives = 196/314 (62%), Gaps = 4/314 (1%) Query: 1 MEVIPTEGTVKRFGKPGTGRMRKQSFYDNIAGYLFISPMXXXXXXXXXXXXXXSGVISFS 60 ME P + + KP R+R + +AG+LF+SPM + V+SF+ Sbjct: 1 METSPQ--AMGKLEKPK--RVRSLQSGETLAGWLFVSPMLIGVCILVLLPIVATIVLSFA 56 Query: 61 DWNFVSGIEGFHFVGVDNYTRLMQDESFHRSLINNLIMIXXXXXXXXXXXXXXXXINKAT 120 DWNFV G +G +VG N+ +L D+ F RS+ NN I + I++ Sbjct: 57 DWNFVQGWKGLDWVGFGNFKKLFHDDQFIRSVRNNFIFLLAVPIYMLISMVLAVIIDRHV 116 Query: 121 YFKTFFKVIYFMPFISSFVAIALLWRVLYHPNNGPINGFLRSIGVENPPLWLADPKFALI 180 Y K++FKV YFMP+ISS VA+A++W+VL+ P+ GPIN L + GV NPP W+ADP FAL Sbjct: 117 YLKSYFKVAYFMPYISSIVAVAIVWQVLFQPSYGPINQILHTFGVSNPPKWIADPHFALA 176 Query: 181 SVMIIMVWTSLGFNMVIYLAGLQNISRDLYEAADVDGATPLRQFFRIXXXXXXXXXXXXX 240 S+M+I+VWTS+GFNM+IY+AGLQ+I +DLYEAAD+DGA +F RI Sbjct: 177 SIMMIVVWTSIGFNMIIYIAGLQSIPKDLYEAADIDGANGWTKFARITFPLLSPTSFFLL 236 Query: 241 ITGIVGSFKVFDLIMVLTNGGPAGSTSVIVFYLYEVAFINLESGYASAMGXXXXXXXXXX 300 +TGI+ +FKVFD+I V+T GGP GSTS++V+YLY+ AF+NL+ GYAS++ Sbjct: 237 VTGIISTFKVFDIIAVMTQGGPIGSTSLMVWYLYDTAFVNLKVGYASSIAAMLFIFVLLI 296 Query: 301 XXXQWVGQKKWVNY 314 QW+ QKKWVNY Sbjct: 297 TFGQWLAQKKWVNY 310 >B3KA94.1 B3KA94_9BACI Binding-protein-dependent transport systems inner membrane component Length = 315 Score = 271 bits (694), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 132/312 (42%), Positives = 193/312 (61%), Gaps = 6/312 (1%) Query: 9 TVKRFGKPGTGRMRKQSFY------DNIAGYLFISPMXXXXXXXXXXXXXXSGVISFSDW 62 T++ KPG R+ +N+ G F+SPM + V+ F+DW Sbjct: 4 TMETMKKPGAQPTREDKSRGSLQRGENLWGIAFVSPMLIGVIILVLFPILATLVLGFADW 63 Query: 63 NFVSGIEGFHFVGVDNYTRLMQDESFHRSLINNLIMIXXXXXXXXXXXXXXXXINKATYF 122 NFV G +G +VG N+ +L++D+ F +S+ NN++ + I++ Y Sbjct: 64 NFVQGWDGIQWVGFQNFRQLLEDDMFIKSVRNNILFLLTVPVYMMISMTLAILIDRFVYM 123 Query: 123 KTFFKVIYFMPFISSFVAIALLWRVLYHPNNGPINGFLRSIGVENPPLWLADPKFALISV 182 K +FKV YFMP+IS+ VA+A++W+VL+ P+ GPIN LR++G+ NPP W+ADP FALIS+ Sbjct: 124 KGYFKVAYFMPYISNIVAVAVVWQVLFQPSYGPINEILRTLGMSNPPKWIADPNFALISI 183 Query: 183 MIIMVWTSLGFNMVIYLAGLQNISRDLYEAADVDGATPLRQFFRIXXXXXXXXXXXXXIT 242 M+I +W S+GFN++IY+AGLQ+I +DLYEAAD+DGA +F RI +T Sbjct: 184 MLISIWISIGFNLIIYIAGLQSIPKDLYEAADIDGANGWTKFRRITLPLLSPTSFFLLVT 243 Query: 243 GIVGSFKVFDLIMVLTNGGPAGSTSVIVFYLYEVAFINLESGYASAMGXXXXXXXXXXXX 302 GI+ +FKVFD+I V+T GGP GST+++V+YLY+ AF+NL+ GYAS++ Sbjct: 244 GIISTFKVFDIIAVMTQGGPIGSTTMMVWYLYDTAFVNLKVGYASSIAAVLFGFVMLITL 303 Query: 303 XQWVGQKKWVNY 314 QW QKKWVNY Sbjct: 304 GQWAAQKKWVNY 315 >B1DAC3.1 B1DAC3_9BACL Binding-protein-dependent transport systems inner membrane component Length = 294 Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 118/288 (40%), Positives = 165/288 (57%), Gaps = 4/288 (1%) Query: 28 DNIAGYLFISPMXXXXXXXXXXXXXXSGVISFSDWNFVSGIEGFHFVGVDNYTRLMQDES 87 + + GY F+ P S +ISF++WN G F G NY RL D++ Sbjct: 9 NRLTGYTFLLPNILGFLIFICFPVCASFLISFTEWN---GFGEIKFTGFSNYARLWSDDT 65 Query: 88 FHRSLINNLIMIXXXX-XXXXXXXXXXXXINKATYFKTFFKVIYFMPFISSFVAIALLWR 146 F SLIN+L+M +N+ F+ F+P I++ +A+A++W+ Sbjct: 66 FRISLINSLVMTAVSVPVTLMLAILAAVALNRGIKGVKLFRTAIFLPHITATIAVAVVWQ 125 Query: 147 VLYHPNNGPINGFLRSIGVENPPLWLADPKFALISVMIIMVWTSLGFNMVIYLAGLQNIS 206 +LY+P GPINGFLRS+G+ +PP WLA ++ALISV+I+ +W S+G+ MV+YLAGLQ I Sbjct: 126 LLYNPTMGPINGFLRSLGIAHPPAWLASTQWALISVIIVSIWHSIGYYMVLYLAGLQGIP 185 Query: 207 RDLYEAADVDGATPLRQFFRIXXXXXXXXXXXXXITGIVGSFKVFDLIMVLTNGGPAGST 266 +DLYEAA++DGA + QF I I GI+ SFKVFDL+ VLT GGP ST Sbjct: 186 KDLYEAAEIDGAGKVSQFRNITLPMLSPVIFFTVIMGIINSFKVFDLVYVLTKGGPGRST 245 Query: 267 SVIVFYLYEVAFINLESGYASAMGXXXXXXXXXXXXXQWVGQKKWVNY 314 ++V+ +Y+ AF E GYASAM Q+ GQK+WVNY Sbjct: 246 HMLVYDIYDTAFKRYEYGYASAMAYVLFAIILVITLIQFRGQKRWVNY 293 >B3K5Y6.1 B3K5Y6_9BACI Binding-protein-dependent transport systems inner membrane component Length = 306 Score = 219 bits (558), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 113/293 (38%), Positives = 174/293 (59%), Gaps = 11/293 (3%) Query: 1 MEVI--PTEGTVKRFGKPGTGRMRKQSFYDNIAGYLFISPMXXXXXXXXXXXXXXSGVIS 58 ME + P + ++F P RK++ + G+LF++P S +S Sbjct: 1 MEAVQQPVPKSRRKFWTPK----RKEA----LIGWLFLAPEIVGMLLLNVFALGFSLYLS 52 Query: 59 FSDWNFVSGIEGFHFVGVDNYTRLMQDESFHRSLINNLI-MIXXXXXXXXXXXXXXXXIN 117 SDW+ +SG++G F G+DNY ++ D + +++ NNLI M+ I+ Sbjct: 53 LSDWDMLSGVQGIEFTGLDNYIKMFHDPTIIQAIKNNLIYMVLTVPIPIAIALVLSVLIH 112 Query: 118 KATYFKTFFKVIYFMPFISSFVAIALLWRVLYHPNNGPINGFLRSIGVENPPLWLADPKF 177 + +FK++FKV +F+P+ISS +A+A +W L+HP+ GPIN FL +G+ +PP WL DPK Sbjct: 113 NSVFFKSYFKVAFFIPYISSIIAVAAVWSALFHPSLGPINQFLMELGISSPPKWLVDPKT 172 Query: 178 ALISVMIIMVWTSLGFNMVIYLAGLQNISRDLYEAADVDGATPLRQFFRIXXXXXXXXXX 237 +L+++ II W LG+ ++IY+AGL NIS ++YEAAD+DGA +++FF I Sbjct: 173 SLLAISIISSWAGLGYTIIIYMAGLTNISNEIYEAADIDGAGAMKKFFAITVPMLRPTTF 232 Query: 238 XXXITGIVGSFKVFDLIMVLTNGGPAGSTSVIVFYLYEVAFINLESGYASAMG 290 IT ++GSFKVFD+I LT GGP S++V+VF +YE F GYASA+ Sbjct: 233 FLLITMLIGSFKVFDIIAFLTEGGPNNSSTVLVFRIYEEGFKYYNMGYASAIS 285 >B1D6F3.1 B1D6F3_9BACL Binding-protein-dependent transport systems inner membrane component Length = 310 Score = 218 bits (555), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 111/286 (38%), Positives = 168/286 (58%), Gaps = 9/286 (3%) Query: 5 PTEGTVKRFGKPGTGRMRKQSFYDNIAGYLFISPMXXXXXXXXXXXXXXSGVISFSDWNF 64 P K+F P R+++ + G+LF+ P S +SFS W+ Sbjct: 12 PAAAARKKFWTPS----RREA----LVGWLFLIPEIVGMLLLNVFALGFSLYLSFSKWDM 63 Query: 65 VSGIEGFHFVGVDNYTRLMQDESFHRSLINNLI-MIXXXXXXXXXXXXXXXXINKATYFK 123 +SG+ G ++G+ NY +L D + +L NNL+ + IN + + K Sbjct: 64 LSGLPGIEWIGLGNYKKLFHDPAILEALKNNLLYTVMTVPIPIAIALVLAVVINNSVFLK 123 Query: 124 TFFKVIYFMPFISSFVAIALLWRVLYHPNNGPINGFLRSIGVENPPLWLADPKFALISVM 183 ++FKV++F+P+ISS +AIA +W L HP+ GPIN L +G++ PP WL DPK +L+S+ Sbjct: 124 SYFKVVFFIPYISSIIAIAAVWSALLHPSLGPINQLLMQLGIDAPPKWLVDPKTSLLSIA 183 Query: 184 IIMVWTSLGFNMVIYLAGLQNISRDLYEAADVDGATPLRQFFRIXXXXXXXXXXXXXITG 243 I W SLG+ ++IY AGL NIS ++YEA+++DGA+PL++FFRI IT Sbjct: 184 FIGTWASLGYTIIIYTAGLTNISNEIYEASEIDGASPLKKFFRITVPLLRPTTFFLAITM 243 Query: 244 IVGSFKVFDLIMVLTNGGPAGSTSVIVFYLYEVAFINLESGYASAM 289 ++GSFKVFD+I LT GGP S++V+V+ +YE F N + GYASA+ Sbjct: 244 LIGSFKVFDIISYLTEGGPNNSSTVLVYRIYEEGFRNYDMGYASAI 289 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.143 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,567,542,349 Number of extensions: 50456856 Number of successful extensions: 148505 Number of sequences better than 1.0e-05: 5534 Number of HSP's gapped: 138624 Number of HSP's successfully gapped: 5535 Length of query: 314 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 179 Effective length of database: 1,788,859,178 Effective search space: 320205792862 Effective search space used: 320205792862 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)