BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0284.0011.p
         (80 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KA95.1 B3KA95_9BACI Binding-protein-dependent transport system...    65   1e-09
A9KI81.1 A9KI81_CLOPH Binding-protein-dependent transport system...    64   5e-09
C0D8C5.1 C0D8C5_9CLOT Putative uncharacterized protein                 63   7e-09
B3K5Y5.1 B3K5Y5_9BACI Binding-protein-dependent transport system...    62   2e-08
B1DBH9.1 B1DBH9_9BACL Binding-protein-dependent transport system...    62   2e-08

>B3KA95.1 B3KA95_9BACI Binding-protein-dependent transport systems inner
          membrane component
          Length = 279

 Score = 65.5 bits (158), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 8  RVIVTLFMGFAGILFIMPFLWMLSASFKPELEVMTYPIRWIPTKWNIVENYKQ 60
          ++IVT+ M    ILF++PF+WML  SFK E +V  YPI+WIP +WN ++NYK+
Sbjct: 11 KLIVTIAMFAVSILFLLPFIWMLVTSFKVERDVFVYPIQWIPREWNAIQNYKE 63


>A9KI81.1 A9KI81_CLOPH Binding-protein-dependent transport systems inner
          membrane component
          Length = 281

 Score = 63.5 bits (153), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 4/65 (6%)

Query: 5  KLSRVIVTLFMGFAGILFIMPFLWMLSASFKPELEVMTYPIRWIPTKWNIVENYKQXXXX 64
          K+ R++ TL +G   +  ++P LWM+SAS K E +V  YP+ WIP ++N++ NYK+    
Sbjct: 10 KIIRIVATLVLGIMALTMVLPLLWMISASMKVEADVFKYPVEWIPKRFNVIANYKEV--- 66

Query: 65 GWGGE 69
           W G 
Sbjct: 67 -WSGR 70


>C0D8C5.1 C0D8C5_9CLOT Putative uncharacterized protein
          Length = 277

 Score = 63.2 bits (152), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 40/53 (75%), Gaps = 1/53 (1%)

Query: 6  LSRVIVTLFMGFAGILFIMPFLWMLSASFKPELEVMTYPIRWIPTKWNIVENY 58
          ++R+I T+ +G   ++FI PFLWMLS SFK E++VM +P+R IP KWN  +NY
Sbjct: 9  MARIITTIIVGALALVFIFPFLWMLSTSFKYEIDVMEFPVRLIPKKWNF-QNY 60


>B3K5Y5.1 B3K5Y5_9BACI Binding-protein-dependent transport systems inner
          membrane component
          Length = 280

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 41/55 (74%)

Query: 5  KLSRVIVTLFMGFAGILFIMPFLWMLSASFKPELEVMTYPIRWIPTKWNIVENYK 59
           +S+V+ T+ MG   I+F++P +WM+SA+FK E +VM +PI+WIP K N+  N+K
Sbjct: 9  NMSKVVTTVIMGALSIVFLVPLIWMISAAFKYEKDVMRFPIQWIPEKVNLAYNFK 63


>B1DBH9.1 B1DBH9_9BACL Binding-protein-dependent transport systems inner
          membrane component
          Length = 280

 Score = 61.6 bits (148), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 36/51 (70%)

Query: 10 IVTLFMGFAGILFIMPFLWMLSASFKPELEVMTYPIRWIPTKWNIVENYKQ 60
          ++T+ M    ILF++PF+WML  SFK E +V  YPI WIP  W+ +ENYK+
Sbjct: 14 VLTVLMFAVSILFLLPFIWMLVTSFKIEKDVFVYPIEWIPRHWHAIENYKE 64


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.330    0.145    0.490 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 489,205,968
Number of extensions: 15748750
Number of successful extensions: 39413
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 39442
Number of HSP's successfully gapped: 18
Length of query: 80
Length of database: 3,060,696,203
Length adjustment: 51
Effective length of query: 29
Effective length of database: 2,580,224,438
Effective search space: 74826508702
Effective search space used: 74826508702
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 125 (52.8 bits)