BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0284.0010.p (185 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KA95.1 B3KA95_9BACI Binding-protein-dependent transport system... 246 5e-64 B1DBH9.1 B1DBH9_9BACL Binding-protein-dependent transport system... 238 2e-61 A9KPA4.1 A9KPA4_CLOPH Binding-protein-dependent transport system... 204 3e-51 B3K5Y5.1 B3K5Y5_9BACI Binding-protein-dependent transport system... 202 1e-50 B1D6F2.1 B1D6F2_9BACL Binding-protein-dependent transport system... 199 1e-49 >B3KA95.1 B3KA95_9BACI Binding-protein-dependent transport systems inner membrane component Length = 279 Score = 246 bits (629), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 121/185 (65%), Positives = 145/185 (78%) Query: 1 MAAYGFSKIIFKGRDVLFLLVLATFMIPTQAILVPQFIMYRWLGLFDSHIXXXXXXXXXX 60 +AAYGFSKI F + LF++VL T+MIP QAIL+PQFI+YR +GLFD+H Sbjct: 95 LAAYGFSKIRFAAGNWLFIIVLVTYMIPGQAILIPQFILYRNIGLFDNHFGLIMLGSFSV 154 Query: 61 XXTFLLRQFFLGIHDEIIESARIDAAGHWTIFSRIALPLVQPALATYMILRFIWTWNDYQ 120 TF+LRQFF+G+H E IESA+ID A H IF IALPLV+PA+ATY ILRFIWTWNDYQ Sbjct: 155 LGTFMLRQFFMGVHQEFIESAKIDGANHPRIFWSIALPLVKPAVATYAILRFIWTWNDYQ 214 Query: 121 NPLVFLRSDSLFTLQLGIRKFADFSGEFYSLMMAGAVSAILPLLIIFIIGQKQVIEGVAM 180 NPL+FLR+D LFT+ L ++KF SGEFYSL+MA AVSAI PLLI+FIIGQK VIEG+A+ Sbjct: 215 NPLIFLRTDRLFTIPLAMQKFTSLSGEFYSLIMAAAVSAIFPLLIVFIIGQKSVIEGIAL 274 Query: 181 GSVKG 185 G VKG Sbjct: 275 GGVKG 279 >B1DBH9.1 B1DBH9_9BACL Binding-protein-dependent transport systems inner membrane component Length = 280 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 125/185 (67%), Positives = 150/185 (81%) Query: 1 MAAYGFSKIIFKGRDVLFLLVLATFMIPTQAILVPQFIMYRWLGLFDSHIXXXXXXXXXX 60 +AAYGFSKI FKG + +FL+VLAT+M+P+QAIL+PQFI+YR +GLFDSH Sbjct: 96 LAAYGFSKIKFKGSNFVFLIVLATYMVPSQAILIPQFILYRQIGLFDSHWGLILLSSFSV 155 Query: 61 XXTFLLRQFFLGIHDEIIESARIDAAGHWTIFSRIALPLVQPALATYMILRFIWTWNDYQ 120 TF+LRQFF+GIH E IESA+ID A H+ I+ IA PLV+PA+ATY ILRFIWTWNDYQ Sbjct: 156 LGTFMLRQFFMGIHQEFIESAKIDGANHFRIYWSIAFPLVKPAVATYAILRFIWTWNDYQ 215 Query: 121 NPLVFLRSDSLFTLQLGIRKFADFSGEFYSLMMAGAVSAILPLLIIFIIGQKQVIEGVAM 180 NPL+FLR+D LFT+ L ++KF SGEFYSL+MA AVSAILPLLIIFIIGQK VIEG+A+ Sbjct: 216 NPLIFLRTDRLFTIPLAMQKFTSLSGEFYSLIMAAAVSAILPLLIIFIIGQKSVIEGIAL 275 Query: 181 GSVKG 185 G VKG Sbjct: 276 GGVKG 280 >A9KPA4.1 A9KPA4_CLOPH Binding-protein-dependent transport systems inner membrane component Length = 276 Score = 204 bits (519), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 100/185 (54%), Positives = 131/185 (70%) Query: 1 MAAYGFSKIIFKGRDVLFLLVLATFMIPTQAILVPQFIMYRWLGLFDSHIXXXXXXXXXX 60 MAAY F+K+ FK +++LF + LAT MIP Q LVP+F++ + L +SH Sbjct: 92 MAAYAFAKLDFKFKNLLFSIFLATMMIPDQVTLVPRFMLLTKMQLLNSHFGLILMLSFSV 151 Query: 61 XXTFLLRQFFLGIHDEIIESARIDAAGHWTIFSRIALPLVQPALATYMILRFIWTWNDYQ 120 FLLRQ + + D IIE+A+ID A H+ IF RI LP+ + +AT ILRF+WTWNDYQ Sbjct: 152 YGVFLLRQSMIALPDTIIEAAKIDGANHFIIFIRIVLPMTKSIIATLAILRFVWTWNDYQ 211 Query: 121 NPLVFLRSDSLFTLQLGIRKFADFSGEFYSLMMAGAVSAILPLLIIFIIGQKQVIEGVAM 180 NPL+FLR LFTLQLG+++FA SG FYSL+MA +V AI+PLL++FIIGQ VIEG+A Sbjct: 212 NPLIFLRDSKLFTLQLGMQQFASVSGTFYSLLMAASVCAIVPLLLVFIIGQNYVIEGIAS 271 Query: 181 GSVKG 185 G+VKG Sbjct: 272 GAVKG 276 >B3K5Y5.1 B3K5Y5_9BACI Binding-protein-dependent transport systems inner membrane component Length = 280 Score = 202 bits (513), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 96/185 (51%), Positives = 130/185 (70%) Query: 1 MAAYGFSKIIFKGRDVLFLLVLATFMIPTQAILVPQFIMYRWLGLFDSHIXXXXXXXXXX 60 MAAY +KI FKGR+++F+ +L+ +IP QA L+P+F++ RW GL+++H Sbjct: 96 MAAYALTKIRFKGRNLVFMALLSFMIIPDQATLIPRFLLIRWFGLYNTHAAIIFMSMFSI 155 Query: 61 XXTFLLRQFFLGIHDEIIESARIDAAGHWTIFSRIALPLVQPALATYMILRFIWTWNDYQ 120 TFLLRQF +GI DE +E+ARID AGH F+ I +PL +P LAT I++FIWTWNDYQ Sbjct: 156 YFTFLLRQFMIGISDEYLEAARIDGAGHLRTFASIMVPLCKPVLATVAIIKFIWTWNDYQ 215 Query: 121 NPLVFLRSDSLFTLQLGIRKFADFSGEFYSLMMAGAVSAILPLLIIFIIGQKQVIEGVAM 180 NPL+FL L+T+ LG+ F D Y++MM AVSAI+PL+I+FI QKQVI G+A+ Sbjct: 216 NPLIFLLDKDLYTIPLGMTLFRDDYTNNYAIMMMAAVSAIIPLVIVFIALQKQVINGIAL 275 Query: 181 GSVKG 185 G VKG Sbjct: 276 GGVKG 280 >B1D6F2.1 B1D6F2_9BACL Binding-protein-dependent transport systems inner membrane component Length = 275 Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 98/185 (52%), Positives = 128/185 (69%) Query: 1 MAAYGFSKIIFKGRDVLFLLVLATFMIPTQAILVPQFIMYRWLGLFDSHIXXXXXXXXXX 60 M+AY +K+ F+GR ++FL +L+ +IP QA L+P+F++ RWLGL+D+H Sbjct: 91 MSAYALTKLRFRGRHMIFLAMLSFMIIPDQATLIPRFLIIRWLGLYDTHAAIILMSMFSI 150 Query: 61 XXTFLLRQFFLGIHDEIIESARIDAAGHWTIFSRIALPLVQPALATYMILRFIWTWNDYQ 120 TFLLRQF I DE +E+ARID AGH F I +PL +P LAT I++FIWTWNDYQ Sbjct: 151 YFTFLLRQFMSDISDEYLEAARIDGAGHLRTFFSIMIPLCRPVLATVAIIKFIWTWNDYQ 210 Query: 121 NPLVFLRSDSLFTLQLGIRKFADFSGEFYSLMMAGAVSAILPLLIIFIIGQKQVIEGVAM 180 NPL+FL S L+T+ LGI F D Y++MM A+SAI+PLL IFII QKQVI G+A+ Sbjct: 211 NPLIFLLSKKLYTIPLGITLFRDDYTNNYAIMMMAALSAIIPLLAIFIIMQKQVINGIAL 270 Query: 181 GSVKG 185 G VKG Sbjct: 271 GGVKG 275 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.334 0.147 0.452 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 948,890,042 Number of extensions: 33672434 Number of successful extensions: 158552 Number of sequences better than 1.0e-05: 5710 Number of HSP's gapped: 151115 Number of HSP's successfully gapped: 5710 Length of query: 185 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 58 Effective length of database: 1,864,227,298 Effective search space: 108125183284 Effective search space used: 108125183284 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 127 (53.5 bits)