BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0284.0009.p (447 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KA96.1 B3KA96_9BACI Extracellular solute-binding protein family 1 354 8e-96 B1DBI0.1 B1DBI0_9BACL Extracellular solute-binding protein family 1 333 2e-89 A9U7V6.1 A9U7V6_PHYPA Predicted protein 289 4e-76 B3K5Y4.1 B3K5Y4_9BACI Extracellular solute-binding protein family 1 221 2e-55 A8VZY0.1 A8VZY0_9BACI Ribonuclease Z EC=3.1.26.11 214 1e-53 >B3KA96.1 B3KA96_9BACI Extracellular solute-binding protein family 1 Length = 456 Score = 354 bits (909), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 183/439 (41%), Positives = 271/439 (61%), Gaps = 15/439 (3%) Query: 18 LVSGCGTPDSEEKAASTTGEKTNEVVTIKLSNWYAKKMDNWDVVIEEFEKQHPNIKVEFA 77 L+SGCG ++E AA + ++L + ++ NW I+ +E+ P + +E Sbjct: 19 LLSGCG--GAKENAAQGDSAQGGGKTNLRLYTYGTEEAYNWKKTIQAYEEATPGVTIELV 76 Query: 78 S-AEDNNSNEFYKKXXXXXXXXXXXXXIMFSNMTYLSQRAELGMIEPLDDFLAKDGINFA 136 +E ++ E +KK +MFS+ +QR LGM EPLDDF+AKDG + Sbjct: 77 QLSEKGDTQEAFKKLDLEAASSAQMDILMFSDPAGYAQRVALGMAEPLDDFIAKDGYSVE 136 Query: 137 DEYNADTKIDGKVYGLPGKSSQGLVFINENHLKEAGLELPKDWTWDQYMEYAKAMTTTDG 196 +Y DT++DGKVY LPGK + V +N++HL+EAGL +P DWTWD+Y +YAK +T +G Sbjct: 137 TDYKVDTRLDGKVYALPGKFNPWYVLLNKDHLEEAGLPVPTDWTWDEYADYAKKLTQGEG 196 Query: 197 GKTRYGTYFH-----SWIQYGYLVQNFGQSVNANLTTDDGKTANIDNPYIRKSLELRLQG 251 RYGTYFH W+++ L+ Q + + DG ++N+DNP R++LELR++ Sbjct: 197 ASKRYGTYFHGPQGGGWLEFLKLMMA-NQPQDTDYLKADG-SSNLDNPTFRQTLELRVRM 254 Query: 252 ETEG-SATPYSEVVSQKLNYRPQYFNQDTSMIVTGSFLIPEAGGTDTIPASFKTVFAPLP 310 E E S+ PY++++SQKLNYR Q+FNQ SMI GS++ E GGTD +P F AP P Sbjct: 255 EKEDQSSVPYTDMISQKLNYRTQFFNQSASMITIGSWMNTEIGGTDKVPLDFNVAVAPFP 314 Query: 311 KLNAGDPMS-SNVSGDVLTVYSKSKHKDEAYTFIRWFSTEGIVLQGKNIPSW---KKANL 366 K AGDP + V+ D + V +KSKHK+EAY F+RW++TEG ++QGKNIP+W K + Sbjct: 315 KNEAGDPTGLTPVTTDYVAVAAKSKHKEEAYKFVRWYTTEGQIVQGKNIPAWQQVKTEQV 374 Query: 367 NDVIDRIIAGSKNPEMIDKESLLYVLENXXXXXXXXXXXYHAELEKVFLEEFDKMMLSNH 426 ++ID I+AG+K+PE +DK+SL+ L Y AE+ + EE++K++L N Sbjct: 375 EEIIDTILAGTKSPEKVDKKSLVDTLVASKASAIVPPAPYQAEVYEAVNEEYEKLILGNQ 434 Query: 427 DIEATIQNSQAKIQKIIDS 445 DI+ TI NSQ ++ KII+S Sbjct: 435 DIDQTIANSQERVNKIIES 453 >B1DBI0.1 B1DBI0_9BACL Extracellular solute-binding protein family 1 Length = 474 Score = 333 bits (855), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 174/435 (40%), Positives = 261/435 (60%), Gaps = 14/435 (3%) Query: 21 GCGTPDSEEKA-ASTTGEKTNEVVTIKLSNWYAKKMDNWDVVIEEFEKQHPNIKVEFAS- 78 P +E + A + + V ++L + ++ NW ++ + +++PN+ VE Sbjct: 37 ASAAPSTEASSNAGGNSAASGDPVKLRLYTYGTEQAYNWKATLDAYHEKNPNVTVELVQL 96 Query: 79 AEDNNSNEFYKKXXXXXXXXXXXXXIMFSNMTYLSQRAELGMIEPLDDFLAKDGINFADE 138 +E ++ E KK +MFS+ +QR LGM PLDDFLAKDG ++ Sbjct: 97 SEKGDTQESMKKLDLAVASGEQIDVMMFSDAAGYAQRVALGMAAPLDDFLAKDGYKVEED 156 Query: 139 YNADTKIDGKVYGLPGKSSQGLVFINENHLKEAGLELPKDWTWDQYMEYAKAMTTTDGGK 198 Y DT ++GKVY LPGK + V +N+++L EAGL +P DWTWD+Y +YAK +T +G Sbjct: 157 YKVDTHLNGKVYSLPGKFNPWYVLLNKDNLDEAGLAVPTDWTWDEYADYAKKLTKGEGAT 216 Query: 199 TRYGTYFH-----SWIQYGYLVQNFGQSVNANLTTDDGKTANIDNPYIRKSLELRLQGET 253 RYGTYFH W++Y L+ Q + DG T+N+D+P +K+LELR++ E Sbjct: 217 KRYGTYFHGPQNGGWMEYLKLMME-NQPTGSEFLKADG-TSNLDDPNFKKTLELRVKMEK 274 Query: 254 EG-SATPYSEVVSQKLNYRPQYFNQDTSMIVTGSFLIPEAGGTDTIPASFKTVFAPLPKL 312 E S+ PYS+++SQKL YR Q+FNQ SM+ GS++ E GGTDT+P +F AP PK Sbjct: 275 EDKSSVPYSDMISQKLAYRNQFFNQSASMLTIGSWMNTEIGGTDTLPLTFHVAVAPFPKN 334 Query: 313 NAGDPMS-SNVSGDVLTVYSKSKHKDEAYTFIRWFSTEGIVLQGKNIPSWKKAN---LND 368 NAGD + V+ D + V SK K+EAY F+RW++TEG V+QGKNIP+W + + Sbjct: 335 NAGDQSGITPVTTDYVAVSESSKKKEEAYKFVRWYTTEGQVVQGKNIPAWNGVSNDQVAG 394 Query: 369 VIDRIIAGSKNPEMIDKESLLYVLENXXXXXXXXXXXYHAELEKVFLEEFDKMMLSNHDI 428 +ID I+AG+KNPE++DK+SL+ L N Y AE+ K EE++K++L N D+ Sbjct: 395 IIDTILAGTKNPELVDKDSLVNTLVNSKATEIIAPASYQAEVYKAINEEYEKLILGNQDV 454 Query: 429 EATIQNSQAKIQKII 443 + T+ NS+ ++ +II Sbjct: 455 DTTVANSKKRVDEII 469 >A9U7V6.1 A9U7V6_PHYPA Predicted protein Length = 324 Score = 289 bits (740), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 143/324 (44%), Positives = 214/324 (66%), Gaps = 4/324 (1%) Query: 124 LDDFLAKDGINFADEYNADT-KIDGKVYGLPGKSSQGLVFINENHLKEAGLELPKDWTWD 182 +DD+LAK+G+ + DEY A+ K+DGK Y LPGK ++ +N+ L A LE+PK WTWD Sbjct: 1 MDDYLAKEGVKYEDEYKAEQQKLDGKRYSLPGKFGPWMILLNKELLDAANLEVPKSWTWD 60 Query: 183 QYMEYAKAMTTTDGGKTRYGTYFHSWIQYGYLVQNFGQSVNANLTTDDGKTANIDNPYIR 242 ++ +YAK +T +G YG +FH W Y +L++ + S + + DDG+T N DNP ++ Sbjct: 61 EFRDYAKKLTKGEGANKTYGAHFHEWKDY-FLLKLYSASGDQGIMKDDGQTLNADNPLMK 119 Query: 243 KSLELRLQGE-TEGSATPYSEVVSQKLNYRPQYFNQDTSMIVTGSFLIPEAGGTDTIPAS 301 +SLELR + E T+ SATPY +V++QK+ YR Q+F Q +M+ TG +++ EAGGTD IPA+ Sbjct: 120 QSLELRYEMEKTDKSATPYQDVITQKIPYRNQFFQQKAAMLPTGPWMVAEAGGTDKIPAT 179 Query: 302 FKTVFAPLPKLNAGDPMSSNVSGDVLTVYSKSKHKDEAYTFIRWFSTEGIVLQGKNIPSW 361 F + FAP P AGD + S D L + S SKHK+E+Y F+R+ STEG+ L + +W Sbjct: 180 FVSAFAPWPTNAAGDDVYSFGGADPLVISSHSKHKEESYRFLRYLSTEGMALTNQ-FSAW 238 Query: 362 KKANLNDVIDRIIAGSKNPEMIDKESLLYVLENXXXXXXXXXXXYHAELEKVFLEEFDKM 421 KKA++N +DRI++ +++P+ IDK SL+ VL Y +LEK ++ E D Sbjct: 239 KKADINQEVDRIVSATQSPDKIDKASLINVLSVTKLPIPPITVSYAGDLEKAYIAEADTY 298 Query: 422 MLSNHDIEATIQNSQAKIQKIIDS 445 MLSN+DI+ T+ + +A +QKIID+ Sbjct: 299 MLSNNDIDKTMDSIKANLQKIIDA 322 >B3K5Y4.1 B3K5Y4_9BACI Extracellular solute-binding protein family 1 Length = 460 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 157/464 (33%), Positives = 240/464 (51%), Gaps = 31/464 (6%) Query: 3 KAKRNLFIIVPLL---ALLVSGCGTPDSEEKAASTTGE-KTNEVVTIKLSNW-YAKKMDN 57 K+K L +I+ + L++SGCG SE A S G +T++ VT+K NW + Sbjct: 4 KSKHRLSVILSTILASTLVLSGCGNSGSETGAGSNGGSGQTDKQVTVKYYNWDNEAQQAG 63 Query: 58 WDVVIEEFEKQHPNIKVEFASAEDNNSNEFYKKXXXXXXXXXXXXXIMFSNMTYLSQRAE 117 D +++EF Q+PNIKVE S E KK I F ++ + +RA Sbjct: 64 TDAMLQEFMDQNPNIKVEHVVLVPGGSVEMLKKLDFLISSGEAIDVIQFPSLGGVLERAT 123 Query: 118 LGMIEPLDDFLAKDGINFADEYNADTKIDGKVYGLPGKSSQGLVFINENHLKEAGLELPK 177 G + PL++F ++ + DEY + K+D K YG+ S V +N++ L EAGLE+PK Sbjct: 124 RGALAPLNEFYEQESLVPEDEYFVNAKVDDKYYGMQYTKSMNYVMLNKDALDEAGLEVPK 183 Query: 178 -DWTWDQYMEYAKAMTTTDGGKTRYGTYFHSWIQYGYLVQNFGQSVNAN-LTTDDGKTAN 235 WTWD Y EY+K +T +G RYG+YFH+W Y + Q++ + +DG T Sbjct: 184 FGWTWDDYREYSKKLTKGEGVDKRYGSYFHTWELY---MNAPAQTMMKDPFVYEDGTTIL 240 Query: 236 IDNPY-----IRKSLELRLQGETEGSATPYSEVVSQKLNYRPQYFNQDTSMIVTGSFLIP 290 D Y +RK +E ET+ SA PYS+V++ KLNYR ++FN++ +MI+TG+F I Sbjct: 241 SDPTYKYFFQLRKDME-----ETDKSAKPYSDVLAAKLNYRTEFFNEEAAMILTGNFTIA 295 Query: 291 EAGGTDTIPASFKTVFAPLPKLNAG-DPMSSN----VSGDVLTVYSKSKHKDEAYTFIRW 345 + G T+ P FKT FAP+P AG +P SG +L + + S +K+ ++ +R Sbjct: 296 DPGNTEQYPHDFKTAFAPVPVPPAGWEPKEYEGKYFTSGSMLAMGANSANKEASFKLMR- 354 Query: 346 FSTEGIVLQGKNIPSWKKANLNDVIDRIIAGSKNPEMIDKESLLYVL---ENXXXXXXXX 402 F T +KKAN +++ +++AG ++ D +SL Y L E Sbjct: 355 FMTTADSDNRLEFSGYKKANNEELLTKLVAGKEDK--YDMDSLKYTLFSDEIQYLDAAKV 412 Query: 403 XXXYHAELEKVFLEEFDKMMLSNHDIEATIQNSQAKIQKIIDSK 446 +EL K+ + F K MLSN I+ Q + KII+ K Sbjct: 413 MMTATSELTKIIDDGFAKFMLSNEPIDEVQQWMVDEATKIINEK 456 >A8VZY0.1 A8VZY0_9BACI Ribonuclease Z EC=3.1.26.11 Length = 460 Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 139/448 (31%), Positives = 219/448 (48%), Gaps = 25/448 (5%) Query: 17 LLVSGCGTPDSEEKAASTTGEKTNEV--------------VTIKLSNWYAKKM-DNWDVV 61 ++++ CG + +E A + N+V VTIK NW M + Sbjct: 16 VVLAACGNENVDEAGAENQSQNENDVNNAAEEMNEADQEPVTIKWYNWDNDVMAQTSEQY 75 Query: 62 IEEFEKQHPNIKVEFASAEDNNSNEFYKKXXXXXXXXXXXXXIMFSNMTYLSQRAELGMI 121 I +FE+++P+I VE S +S + I F N+ L QRAE+G + Sbjct: 76 IADFEEEYPHITVESISMVPGDSLGTLQNLDILLSSGEKVDVISFPNVDSLYQRAEMGAL 135 Query: 122 EPLDDFLAKDGINFADEYNADTKIDGKVYGLPGKSSQGLVFINENHLKEAGLELP-KDWT 180 PLD+F +GI DEY + ++ YG+ ++ + +N++ EAGL++P WT Sbjct: 136 APLDEFYDNEGITPNDEYFINPMVNDDYYGIQYNATLNFMMLNKDAFDEAGLDIPDASWT 195 Query: 181 WDQYMEYAKAMTTTDGGKTRYGTYFHSWIQYGYLVQNFGQSVNANLTTDDGKTANIDNPY 240 W + EYA + +G RYG YFH+W Y + Q++ + + T N + Sbjct: 196 WADFEEYAGQLVNKEGDNQRYGAYFHTWPLY---MNPPAQTLMKHPFLYEDGTTNFADES 252 Query: 241 IRKSLELRLQGETEGSATPYSEVVSQKLNYRPQYFNQDTSMIVTGSFLIPEAGGTDTIPA 300 + +R + ETEG Y+E + L YR +YFN++ SM++TGS++I EAG TD P Sbjct: 253 FPEMFAMRERLETEGITKTYAESLGADLGYRTEYFNENASMLLTGSWMIGEAGDTDLNPH 312 Query: 301 SFKTVFAPLPKLNAGDPMSSNVSGDVLTVYSKSKHKDEAYTFIRWFSTEGIVLQGKNIPS 360 F T FAP+P LN GDP + G+ + + S++KDEAY F R ST + +P Sbjct: 313 DFTTAFAPVPVLNEGDPSEYYMGGNFFGIGNTSEYKDEAYLFARHVST-NLSDSRSELPG 371 Query: 361 WKKANLNDVIDRIIAGSKNPEMIDKESLLYVL---ENXXXXXXXXXXXYHAELEKVFLEE 417 WKK + V++R+I G N + ID +SL+Y L + Y EL+ + ++ Sbjct: 372 WKKGDPQPVVERMIDG--NEDQIDVDSLMYTLFGDDISYLDASQISITYAGELDSILVDG 429 Query: 418 FDKMMLSNHDIEATIQNSQAKIQKIIDS 445 F ML N ++ + K+IDS Sbjct: 430 FGMYMLDNEPLDEVQAWMVEEATKVIDS 457 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.131 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,566,600,398 Number of extensions: 107121490 Number of successful extensions: 215125 Number of sequences better than 1.0e-05: 443 Number of HSP's gapped: 215277 Number of HSP's successfully gapped: 444 Length of query: 447 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 308 Effective length of database: 1,751,175,118 Effective search space: 539361936344 Effective search space used: 539361936344 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)