BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0284.0001.p
         (62 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C2UES7.1 C2UES7_BACCE Major royal jelly protein                       101   2e-20
C2RP26.1 C2RP26_BACCE Major royal jelly protein                       101   2e-20
C2YBD8.1 C2YBD8_BACCE Major royal jelly protein                       100   3e-20
C3FL43.1 C3FL43_BACTB Major royal jelly protein                        98   3e-19
C3D2M5.1 C3D2M5_BACTU Major royal jelly protein                        98   3e-19

>C2UES7.1 C2UES7_BACCE Major royal jelly protein
          Length = 371

 Score =  101 bits (252), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 57/90 (63%), Gaps = 28/90 (31%)

Query: 1   MITDAQGNVDAGDYENNSIRKILPNGILETIAHDPRILWPDTFSIGLDQTLY-------- 52
           MITDA+G V AGDYENNSIRKILPNGI+ETIAHDPRILWPDTFSIG DQ LY        
Sbjct: 281 MITDAKGTVYAGDYENNSIRKILPNGIMETIAHDPRILWPDTFSIGPDQYLYVIVNQLHR 340

Query: 53  --------------------KIDELPAPTF 62
                               KIDE PAPTF
Sbjct: 341 QPRFHYGKDLRQKPYSLLRIKIDEFPAPTF 370


>C2RP26.1 C2RP26_BACCE Major royal jelly protein
          Length = 365

 Score =  101 bits (252), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 57/90 (63%), Gaps = 28/90 (31%)

Query: 1   MITDAQGNVDAGDYENNSIRKILPNGILETIAHDPRILWPDTFSIGLDQTLY-------- 52
           MITDA+G V AGDYENNSIRKILPNGI+ETIAHDPRILWPDTFSIG DQ LY        
Sbjct: 275 MITDAKGTVYAGDYENNSIRKILPNGIMETIAHDPRILWPDTFSIGPDQYLYVIVNQLHR 334

Query: 53  --------------------KIDELPAPTF 62
                               KIDE PAPTF
Sbjct: 335 QPRFHYGKDLRQKPYSLLRIKIDEFPAPTF 364


>C2YBD8.1 C2YBD8_BACCE Major royal jelly protein
          Length = 371

 Score =  100 bits (250), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 57/90 (63%), Gaps = 28/90 (31%)

Query: 1   MITDAQGNVDAGDYENNSIRKILPNGILETIAHDPRILWPDTFSIGLDQTLY-------- 52
           MITDA+G + AGDYENNSIRKILPNGI+ETIAHDPRILWPDTFSIG DQ LY        
Sbjct: 281 MITDAKGTIYAGDYENNSIRKILPNGIMETIAHDPRILWPDTFSIGPDQYLYVIVNQLHR 340

Query: 53  --------------------KIDELPAPTF 62
                               KIDE PAPTF
Sbjct: 341 QPRFHYGKDLRQKPYSLLRIKIDEFPAPTF 370


>C3FL43.1 C3FL43_BACTB Major royal jelly protein
          Length = 371

 Score = 97.8 bits (242), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 55/90 (61%), Gaps = 28/90 (31%)

Query: 1   MITDAQGNVDAGDYENNSIRKILPNGILETIAHDPRILWPDTFSIGLDQTLY-------- 52
           MITDA+G V AGDYENNSIRKI PN I+ETIAHDPRILWPDTFSIG DQ LY        
Sbjct: 281 MITDAKGTVYAGDYENNSIRKIFPNCIMETIAHDPRILWPDTFSIGPDQYLYVIVNQLHR 340

Query: 53  --------------------KIDELPAPTF 62
                               KIDE PAPTF
Sbjct: 341 QPRFHYGKDLRQKPYSLLRIKIDEFPAPTF 370


>C3D2M5.1 C3D2M5_BACTU Major royal jelly protein
          Length = 371

 Score = 97.8 bits (242), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 55/90 (61%), Gaps = 28/90 (31%)

Query: 1   MITDAQGNVDAGDYENNSIRKILPNGILETIAHDPRILWPDTFSIGLDQTLY-------- 52
           MITDA+G V AGDYENNSIRKI PN I+ETIAHDPRILWPDTFSIG DQ LY        
Sbjct: 281 MITDAKGTVYAGDYENNSIRKIFPNCIMETIAHDPRILWPDTFSIGPDQYLYVIVNQLHR 340

Query: 53  --------------------KIDELPAPTF 62
                               KIDE PAPTF
Sbjct: 341 QPRFHYGKDLRQKPYSLLRIKIDEFPAPTF 370


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.140    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 425,017,918
Number of extensions: 14817602
Number of successful extensions: 26460
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 26462
Number of HSP's successfully gapped: 24
Length of query: 62
Length of database: 3,060,696,203
Length adjustment: 34
Effective length of query: 28
Effective length of database: 2,740,381,693
Effective search space: 76730687404
Effective search space used: 76730687404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)