BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0282.0011.p (405 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KB95.1 B3KB95_9BACI Aminotransferase class I and II 499 e-139 B1DDH0.1 B1DDH0_9BACL Putative transcriptional regulator, GntR f... 294 1e-77 C0ZHN6.1 C0ZHN6_BREBN Putative aminotransferase EC=2.6.1.- 263 2e-68 Q5WHW7.1 Q5WHW7_BACSK Aminotransferase 253 3e-65 Q9KDT4.1 Q9KDT4_BACHD Aminotransferase 253 3e-65 >B3KB95.1 B3KB95_9BACI Aminotransferase class I and II Length = 404 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 246/406 (60%), Positives = 297/406 (73%), Gaps = 3/406 (0%) Query: 1 MKYEFSARAHTLHSSTLLSIRTETRRGTLIXXXXXXXXXXXXXXXXXXXTASTVISADAG 60 M+Y F++RA TL SS L IR +R + I A++V+S D Sbjct: 1 MQYSFASRAQTLLSSPLRDIRELAKRDSFISLAEELPAEELFPLHSLAEAATSVLSEDPL 60 Query: 61 ALQYGDPEGYGPLREWLTGDWXXXXXXXXXXXXXXXXXXSQQAIDLLSRVYIDPGDRVLV 120 ALQYG+ EGYGPLREWL+ D+ +QQAIDLL RVY+DPGD VLV Sbjct: 61 ALQYGEAEGYGPLREWLSEDFSRRKGLSVQPQHILLTTGTQQAIDLLVRVYVDPGDPVLV 120 Query: 121 ENPTSPGILQALRMQGAVIIPVKGDQDGLLPEHLRTQIRLHRPKMLFATPSFTNPSGILW 180 ENPTSPG+LQ LR+QGAVI+PV+GD DG+LPEHL IR H+PK+L A P+FTNP+G++W Sbjct: 121 ENPTSPGLLQVLRLQGAVIVPVEGDHDGMLPEHLEAMIRQHKPKLLMAAPNFTNPTGVMW 180 Query: 181 SLARRKEVLELCTTHNLLIVEDDSYGDLHFQRYTEHPSVKYPSLYALENVSEGGHVLYIG 240 SL RR++VL+LC +H LL+VEDDSYGDLHF ++P + PS+++LE +GGHVLY+G Sbjct: 181 SLERRQQVLKLCVSHGLLVVEDDSYGDLHFAD-AKNPKPRIPSIFSLEE-PQGGHVLYVG 238 Query: 241 SFSKTVAPALRTGWAAGSRELIGMMAAAKQMADWQSSSLNQRLLHHLLDVTAFDLREHIA 300 SFSKTVAPALRTGWAAGSR LI MM A KQMADWQSS LNQR+LHHLL+ F L +HI Sbjct: 239 SFSKTVAPALRTGWAAGSRRLIEMMTAVKQMADWQSSMLNQRMLHHLLESKHFKLEDHID 298 Query: 301 LLNREYNTRLKLMAELLKRPAWKSSSYCLPAGGMFLWVTLPEGLDAMALLKASLAKGVAF 360 +LNREY TRLKLM ELLKR AWK S Y +P GGMFLWV LP GL+ ALL+A+L KG AF Sbjct: 299 MLNREYATRLKLMVELLKRSAWKDSRYAVPPGGMFLWVQLPPGLNGDALLRAALLKGAAF 358 Query: 361 LPGPLCSVSGGSGR-IRLNFSHPGRDELLLGMNLMSEAVTEFTARS 405 LPG +CS + + IRLNF+HPGRDELLLGMNL+SEAV EFTAR+ Sbjct: 359 LPGSMCSAADRTKECIRLNFTHPGRDELLLGMNLISEAVMEFTARN 404 >B1DDH0.1 B1DDH0_9BACL Putative transcriptional regulator, GntR family Length = 399 Score = 294 bits (753), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 162/407 (39%), Positives = 233/407 (57%), Gaps = 10/407 (2%) Query: 1 MKYEFSARAHTLHSSTLLSIRTETRRGTLIXXXXXXXXXXXXXXXXXXXTASTVISADAG 60 M++ F++R + SS + I T+ ++ A ISA Sbjct: 1 MEFRFASRMTQVKSSVVRDILKLTQGNDIVSFAGGLPAEELFPVQAVREAADRAISAGTS 60 Query: 61 ALQYGDPEGYGPLREWLTGDWXXXXXXXXXXXXXXXXXXSQQAIDLLSRVYIDPGDRVLV 120 ALQYG EGY PLRE L SQQAI LL +V +PGD V+V Sbjct: 61 ALQYGLTEGYLPLREQLCVR-MAQKGMNVQPDEMIITTGSQQAISLLVQVLTEPGDTVIV 119 Query: 121 ENPTSPGILQALRMQGAVIIPVKGDQDGLLPEHLRTQIRLHRPKMLFATPSFTNPSGILW 180 E PT LQ + G ++ + D+ G++PE + +R H+PK ++A P+F NP+G +W Sbjct: 120 ERPTYLACLQVFELHGLKVVAAESDEHGMIPEDVERLVRQHKPKFIYAVPTFGNPTGNVW 179 Query: 181 SLARRKEVLELCTTHNLLIVEDDSYGDLHFQRYTEHPSVKYPSLYALENVSEG-GHVLYI 239 S+ RR+E+L +C H + I+EDD YG+L +Y E+ + YP+L+AL+ G G V+Y Sbjct: 180 SMERRQEILRICAGHQVPIIEDDPYGEL---KYDENAA--YPTLFALDQQQFGSGVVIYT 234 Query: 240 GSFSKTVAPALRTGWAAGSRELIGMMAAAKQMADWQSSSLNQRLLHHLLDVTAFDLREHI 299 +FSK VAPALRTGWA G +I M+A AKQ AD QSS+++Q++L LL F L EHI Sbjct: 235 STFSKIVAPALRTGWAIGDTRVIKMLAKAKQAADLQSSTMDQQILSQLL--AHFPLDEHI 292 Query: 300 ALLNREYNTRLKLMAELLKRPAWKSSSYCLPAGGMFLWVTLPEGLDAMALLKASLAKGVA 359 +++ Y R++ M L+K + + P GGMFLWV LPEGLDA ALL+ +++KGVA Sbjct: 293 RIISESYGDRMREMQNLIKAQKIEGMHWIEPKGGMFLWVELPEGLDAEALLRVAVSKGVA 352 Query: 360 FLPG-PLCSVSGGSGRIRLNFSHPGRDELLLGMNLMSEAVTEFTARS 405 F+PG + RLNF+H ++ +LG+ ++EA+ EFTARS Sbjct: 353 FVPGSAFYAYDPKRNTARLNFTHNKGEKTVLGVARLAEAIREFTARS 399 >C0ZHN6.1 C0ZHN6_BREBN Putative aminotransferase EC=2.6.1.- Length = 402 Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 152/403 (37%), Positives = 212/403 (52%), Gaps = 9/403 (2%) Query: 1 MKYEFSARAHTLHSSTLLSIRTETRRGTLIXXXXXXXXXXXXXXXXXXXTASTVISADAG 60 M+Y FS L SS + I T+ ++ + A Sbjct: 1 MEYSFSKSVEALSSSAVREILKLTQGNQVLSLAGGLPAEDSFPIAEMREAFNRAFEKGAK 60 Query: 61 ALQYGDPEGYGPLREWLTGDWXXXXXXXXXXXXXXXXXXSQQAIDLLSRVYIDPGDRVLV 120 ALQYG +GY PLREW+ SQQA+DLL RVY+D GD VLV Sbjct: 61 ALQYGLTDGYLPLREWIASR-MKQKHMNVGADNMIITTGSQQAVDLLCRVYLDEGDVVLV 119 Query: 121 ENPTSPGILQALRMQGAVIIPVKGDQDGLLPEHLRTQIRLHRPKMLFATPSFTNPSGILW 180 ENPT +Q + +G IPV GD +G+ + L +I +RPKM++ P+F NP+G +W Sbjct: 120 ENPTYLAAVQLFQFRGIKAIPVDGDANGMDLDDLAKKIAQYRPKMVYVIPTFANPTGKVW 179 Query: 181 SLARRKEVLELCTTHNLLIVEDDSYGDLHFQRYTEHPSVKYPSLYALENVSEGGHVLYIG 240 SL RR +L C N+LI+EDD YG++ F E P Y S+++L+ V+Y Sbjct: 180 SLERRLGLLRQCKAQNILILEDDPYGEIQFD--GEAP---YRSIFSLDEHPTDCCVVYTS 234 Query: 241 SFSKTVAPALRTGWAAGSRELIGMMAAAKQMADWQSSSLNQRLLHHLLDVTAFDLREHIA 300 +FSK VAP LRTGWA G +I MM AKQ D QSS+++Q L+ LL + FDL HI Sbjct: 235 TFSKIVAPGLRTGWAIGDTRVIQMMVKAKQAVDLQSSTIDQYALYELL--SRFDLERHIE 292 Query: 301 LLNREYNTRLKLMAELLKRPAWKSSSYCLPAGGMFLWVTLPEGLDAMALLKASLAKGVAF 360 + Y R++ M ELL W+ + P GGMFLWV LPE DA LL S+ +GVAF Sbjct: 293 KIRESYKARMEWMHELLVAQNWEGVQWEKPRGGMFLWVNLPEHFDAEKLLAQSVKEGVAF 352 Query: 361 LPG-PLCSVSGGSGRIRLNFSHPGRDELLLGMNLMSEAVTEFT 402 +PG P + +RLN++ R++ L ++ + +A ++ Sbjct: 353 VPGKPFYAAEPHLNTMRLNYTLLNREDTELAISRLGKAFHAYS 395 >Q5WHW7.1 Q5WHW7_BACSK Aminotransferase Length = 400 Score = 253 bits (645), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 150/396 (37%), Positives = 208/396 (52%), Gaps = 13/396 (3%) Query: 1 MKYEFSARAHTLHSSTLLSIRTETRRGTLIXXXXXXXXXXXXXXXXXXXTASTVISADAG 60 MKY F+ R L SS + I RG +I S V ++ Sbjct: 1 MKYAFAQRVRHLKSSAVRDILKVVNRGDVISFAGGLPDDGLFPLKAIEEAFSRVFASGNK 60 Query: 61 ALQYGDPEGYGPLREWLTGDWXXXXXXXXXXXXXXXXXXSQQAIDLLSRVYIDPGDRVLV 120 ALQYG+ EGY PLRE + SQQAIDL SRV I PGD + Sbjct: 61 ALQYGETEGYLPLREVILERMEKKGITGLTADEMLLTTGSQQAIDLFSRVMIGPGDVIFT 120 Query: 121 ENPTSPGILQALRMQGAVIIPVKGDQDGLLPEHLRTQIRLHRPKMLFATPSFTNPSGILW 180 E PT LQ + A IIPVK D DG++ + L +I+ ++PK+++ P+F+NP+G +W Sbjct: 121 EEPTYLAALQVFQSYEATIIPVKCDADGMMMDDLVRKIKEYKPKVIYVVPTFSNPTGRVW 180 Query: 181 SLARRKEVLELCTTHNLLIVEDDSYGDLHFQRYTEHPSVKYPSLYALENVSEGGHVLYIG 240 +L RRKE++ L H++LI EDD YGD+ F P Y + AL++ G HVLY Sbjct: 181 TLERRKELVGLARKHHVLIFEDDPYGDIQFT-----PG-GYTPIAALDD---GSHVLYTS 231 Query: 241 SFSKTVAPALRTGWAAGSRELIGMMAAAKQMADWQSSSLNQRLLHHLLDVTAFDLREHIA 300 +FSKT PALRTGW G ++I MMA AKQ D S+S+ + L+HL FD HI Sbjct: 232 TFSKTAVPALRTGWITGPYQIIRMMAQAKQANDLHSNSIGHQALYHL--CRNFDFDGHIH 289 Query: 301 LLNREYNTRLKLMAELLKRPAWKSS-SYCLPAGGMFLWVTLPEGLDAMALLKASLAKGVA 359 ++ Y R +M + LK + S + P GGMFLWV ++ ALL ++ KG+A Sbjct: 290 NISELYGHRKNVMVDCLKEAKERGSIQFIEPEGGMFLWVEAEPHVNTEALLPRAVEKGMA 349 Query: 360 FLPG-PLCSVSGGSGRIRLNFSHPGRDELLLGMNLM 394 ++PG P + + +RLNF+H E+ GM +M Sbjct: 350 YVPGRPFYAGAPQLNTLRLNFTHATDAEIEKGMGIM 385 >Q9KDT4.1 Q9KDT4_BACHD Aminotransferase Length = 400 Score = 253 bits (645), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 142/399 (35%), Positives = 208/399 (52%), Gaps = 11/399 (2%) Query: 1 MKYEFSARAHTLHSSTLLSIRTETRRGTLIXXXXXXXXXXXXXXXXXXXTASTVISADAG 60 MKY F+ R LHSS + I + +I S V + Sbjct: 1 MKYAFAKRVRHLHSSAVRDILKVVNQQGVISFAGGLPDDELFPLEAMEDAFSRVFATGKK 60 Query: 61 ALQYGDPEGYGPLREWLTGDWXXXXXXXXXXXXXXXXXXSQQAIDLLSRVYIDPGDRVLV 120 ++QY + EG+ PLRE + SQQAIDL SRV +PGD VL Sbjct: 61 SMQYSETEGFLPLRELILERMGRKGIRSYSERNVLITTGSQQAIDLFSRVMFNPGDVVLT 120 Query: 121 ENPTSPGILQALRMQGAVIIPVKGDQDGLLPEHLRTQIRLHRPKMLFATPSFTNPSGILW 180 E+PT LQ A I+PV D +G++PE L +++ H+PK ++ P+F+NP+G +W Sbjct: 121 EDPTYLAALQVFESYEAEIVPVASDDEGMIPEDLEQKMKQHKPKCVYVVPTFSNPAGRVW 180 Query: 181 SLARRKEVLELCTTHNLLIVEDDSYGDLHFQRYTEHPSVKYPSLYALENVSEGGHVLYIG 240 SL RRK +L + H++LI EDD YGD+ F + Y L A++ G HVLY Sbjct: 181 SLERRKHLLNMAHKHHVLIFEDDPYGDIQFNQ-----EETYVPLAAMDT---GSHVLYTS 232 Query: 241 SFSKTVAPALRTGWAAGSRELIGMMAAAKQMADWQSSSLNQRLLHHLLDVTAFDLREHIA 300 +FSKT PALRTGW G +++ MMA AKQ D S+SL+Q+ L+ L T D+ HI Sbjct: 233 TFSKTAVPALRTGWITGPFQVVRMMAQAKQANDLHSNSLSQQALYQLF--THHDMDGHIQ 290 Query: 301 LLNREYNTRLKLMAELLKRPAWKSSSYCLPAGGMFLWVTLPEGLDAMALLKASLAKGVAF 360 L Y +R +M + L+ + P GGMFLW L E ++ L+K ++AKG+A+ Sbjct: 291 RLIEVYRSRKDVMIKTLQGADIPGLRFVEPKGGMFLWAELDEAINTSLLIKEAVAKGMAY 350 Query: 361 LPG-PLCSVSGGSGRIRLNFSHPGRDELLLGMNLMSEAV 398 +PG P + +RLNF+H +++ G+ + ++ V Sbjct: 351 VPGEPFYAGVPKYNTLRLNFTHSTPEKIEKGIGIFADVV 389 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.135 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,234,398,130 Number of extensions: 85904301 Number of successful extensions: 214905 Number of sequences better than 1.0e-05: 4951 Number of HSP's gapped: 206544 Number of HSP's successfully gapped: 4954 Length of query: 405 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 267 Effective length of database: 1,760,596,133 Effective search space: 470079167511 Effective search space used: 470079167511 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)