BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0282.0010.p (218 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KB94.1 B3KB94_9BACI Response regulator receiver 248 3e-64 A9B5L0.1 A9B5L0_HERA2 Two component transcriptional regulator, L... 100 2e-19 A3DEX0.1 A3DEX0_CLOTH Two component transcriptional regulator, L... 94 7e-18 B4BE61.1 B4BE61_CLOTM Two component transcriptional regulator, L... 94 7e-18 Q97DP3.1 Q97DP3_CLOAB Response regulator (CheY-like receiver dom... 91 5e-17 >B3KB94.1 B3KB94_9BACI Response regulator receiver Length = 218 Score = 248 bits (633), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 133/218 (61%), Positives = 165/218 (75%) Query: 1 MMKVWRVIIVGCHPTSMLGTKLILEESKEIEVVGMFSNWSEGVHTVQQQQPDLVLTDYQM 60 M +VWRV+IVG PTSMLGTKLILEE +++ V GM S+ SEG+ V+ PDLVL DY + Sbjct: 1 MNQVWRVVIVGSQPTSMLGTKLILEEQQDLLVEGMTSSGSEGLRMVEDLLPDLVLLDYHL 60 Query: 61 PEGNVEGALVEMKQSSKSTHFIIMTEEEDKELFQPLIELGASGVLSKGASPRQLLQMISG 120 + E L +MK S TH +IMT+ + L Q LI GASG+LSK AS QL+ MI+G Sbjct: 61 SDHTSEAVLEQMKLLSPKTHVVIMTDNDGLPLLQSLISRGASGLLSKQASTFQLIHMITG 120 Query: 121 LREGFLSIPLEWAQDGFRPVASSRGLDGVLQLTQTEMFIMERIVQGITYDKIALEIEVSR 180 LREG S+PL+W + G P+ +S +G LQL++TE FIMERIVQGITYDKIA+EI+VSR Sbjct: 121 LREGVASLPLDWVRQGIWPLTASAMNEGGLQLSETEAFIMERIVQGITYDKIAMEIQVSR 180 Query: 181 RSIDNYLRKIYVKLEVSTRAQAIEKFALFSRQNKQMYA 218 RSIDNYLRKIYVKL VSTRAQAIEK+AL++RQ +Q+YA Sbjct: 181 RSIDNYLRKIYVKLGVSTRAQAIEKYALYTRQGRQIYA 218 >A9B5L0.1 A9B5L0_HERA2 Two component transcriptional regulator, LuxR family Length = 207 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 112/198 (56%), Gaps = 3/198 (1%) Query: 6 RVIIVGCHPTSMLGTKLILEESKEIEVVGMFSNWSEGVHTVQQQQPDLVLTDYQMPEGNV 65 RV++V HP G +L ++ E VG ++ + V+ ++QQQPD+VL D ++P+ + Sbjct: 3 RVLVVDDHPVVRHGLMAMLGWEQDFEPVGDAADGQQAVNLIEQQQPDVVLLDLRLPQLSG 62 Query: 66 EGALVEMKQSSKSTHFIIMTEEEDKELFQPLIELGASGVLSKGASPRQLLQMISGLREGF 125 + + S+ +T F+++T + E P + GA+G L K ASP ++ + I + EG Sbjct: 63 IEVMRHTRASAPNTRFLVLTTYDTDEYIGPALNAGAAGYLLKDASPEEVFRAIRSIYEGG 122 Query: 126 LSIPLEWAQDGFRPVASSRGLDGVLQLTQTEMFIMERIVQGITYDKIALEIEVSRRSIDN 185 ++ A + +A+ D +L+Q E+ +++ +V+G + IAL + +S +I + Sbjct: 123 AALQSGIAARVLKRLATEPAED---ELSQRELDVLQLLVRGESNKAIALSLNISENTIKS 179 Query: 186 YLRKIYVKLEVSTRAQAI 203 ++ I+ KL+V +RA+A+ Sbjct: 180 HVSHIFSKLDVRSRAEAV 197 >A3DEX0.1 A3DEX0_CLOTH Two component transcriptional regulator, LuxR family Length = 216 Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 104/205 (50%), Gaps = 4/205 (1%) Query: 2 MKVWRVIIVGCHPTSMLGTKLILEESKEIEVVGMFSNWSEGVHTVQQQQPDLVLTDYQMP 61 M RV+I H G K ILE K+I VV SN E V ++ QPD+VL D MP Sbjct: 1 MDKIRVVIADDHAMVREGLKQILELEKDIAVVAQASNGEEAVKLAKECQPDVVLMDINMP 60 Query: 62 EGNVEGALVEMKQSSKSTHFIIMTEEEDKELFQPLIELGASGVLSKGASPRQLLQMISGL 121 N A+ ++K + + I++T EDKE +++GA G + K A L++ I + Sbjct: 61 GMNGLQAIEKIKAENLAVKIIVLTIHEDKEYLFKTLQMGAEGYVLKDADSTVLVEAIRSV 120 Query: 122 REG--FL--SIPLEWAQDGFRPVASSRGLDGVLQLTQTEMFIMERIVQGITYDKIALEIE 177 G ++ ++ E ++ R + + LT E+ ++E I QG+ +IA + Sbjct: 121 NRGESYIQSNMTKELVREFNRVTVNEKAKKTENDLTPRELEVLELIAQGLINKEIAKRLF 180 Query: 178 VSRRSIDNYLRKIYVKLEVSTRAQA 202 +S +++ N++ I+ KL VS R QA Sbjct: 181 ISEKTVKNHVSNIFKKLNVSDRTQA 205 >B4BE61.1 B4BE61_CLOTM Two component transcriptional regulator, LuxR family Length = 216 Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 104/205 (50%), Gaps = 4/205 (1%) Query: 2 MKVWRVIIVGCHPTSMLGTKLILEESKEIEVVGMFSNWSEGVHTVQQQQPDLVLTDYQMP 61 M RV+I H G K ILE K+I VV SN E V ++ QPD+VL D MP Sbjct: 1 MDKIRVVIADDHAMVREGLKQILELEKDIAVVAQASNGEEAVKLAKECQPDVVLMDINMP 60 Query: 62 EGNVEGALVEMKQSSKSTHFIIMTEEEDKELFQPLIELGASGVLSKGASPRQLLQMISGL 121 N A+ ++K + + I++T EDKE +++GA G + K A L++ I + Sbjct: 61 GMNGLQAIEKIKAENLAVKIIVLTIHEDKEYLFKTLQMGAEGYVLKDADSTVLVEAIRSV 120 Query: 122 REG--FL--SIPLEWAQDGFRPVASSRGLDGVLQLTQTEMFIMERIVQGITYDKIALEIE 177 G ++ ++ E ++ R + + LT E+ ++E I QG+ +IA + Sbjct: 121 NRGESYIQSNMTKELVREFNRVTVNEKAKKTENDLTPRELEVLELIAQGLINKEIAKRLF 180 Query: 178 VSRRSIDNYLRKIYVKLEVSTRAQA 202 +S +++ N++ I+ KL VS R QA Sbjct: 181 ISEKTVKNHVSNIFKKLNVSDRTQA 205 >Q97DP3.1 Q97DP3_CLOAB Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) Length = 217 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 105/206 (50%), Gaps = 2/206 (0%) Query: 2 MKVWRVIIVGCHPTSMLGTKLILEESKEIEVVGMFSNWSEGVHTVQQQQPDLVLTDYQMP 61 M R+++V H G KLI E E EVVG N + + + + +PD++L D MP Sbjct: 1 MSKRRILVVDDHFVVREGLKLIFELEDEYEVVGEAENGEQALLLIDELKPDVILMDLSMP 60 Query: 62 EGNVEGALVEMKQSSKSTHFIIMTEEEDKELFQPLIELGASGVLSKGASPRQLLQMISGL 121 + + L +K+ S II+T + L + + LGA G L K + +L++ + Sbjct: 61 KMSGLDVLKALKEKENSIPIIILTTYNEDNLIKEGLSLGAKGYLLKDTTREELIRTVESA 120 Query: 122 REGFLSIPLEWAQDGFRPVASSRGLDGVLQ--LTQTEMFIMERIVQGITYDKIALEIEVS 179 G L + E ++ F ++ +T+ E+FI++ I +G +IA ++ +S Sbjct: 121 FRGELLLQPEVSKVLFNVKKKESTINTSFNASITERELFILQSIARGCKSKEIAFDMGIS 180 Query: 180 RRSIDNYLRKIYVKLEVSTRAQAIEK 205 R++ +L IY KL+VS+R++A+ K Sbjct: 181 ERTVKAHLTNIYSKLQVSSRSEAVAK 206 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.134 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,183,901,713 Number of extensions: 45589256 Number of successful extensions: 172828 Number of sequences better than 1.0e-05: 4276 Number of HSP's gapped: 173078 Number of HSP's successfully gapped: 4276 Length of query: 218 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 88 Effective length of database: 1,835,964,253 Effective search space: 161564854264 Effective search space used: 161564854264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)