BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0282.0009.p
         (104 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KB93.1 B3KB93_9BACI Putative uncharacterized protein                105   1e-21
B1D8X2.1 B1D8X2_9BACL Putative uncharacterized protein                 82   2e-14

>B3KB93.1 B3KB93_9BACI Putative uncharacterized protein
          Length = 137

 Score =  105 bits (263), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/104 (51%), Positives = 69/104 (66%)

Query: 1   VMIGLGFYAVYSYTNHLKEXXXXXXXXXXXXXXXXXKTDYESRIGVLSQQVKELQSTVDT 60
           V+IGLG  A Y Y+NHLKE                 K +Y+ R   L Q++ E+QS V +
Sbjct: 34  VLIGLGTTAAYLYSNHLKEQVVVQLQQDTRQEMAAFKAEYDQRFNELVQEMDEMQSKVQS 93

Query: 61  FNELLTFTKDNASNKTDNSNKLYTQLNEVRKQLAALQKEMDLLK 104
           FNELLTFTKD AS KTDNSNKLY+QL++V KQL  L+++M+LLK
Sbjct: 94  FNELLTFTKDQASGKTDNSNKLYSQLSQVEKQLKELERKMELLK 137


>B1D8X2.1 B1D8X2_9BACL Putative uncharacterized protein
          Length = 141

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 4/108 (3%)

Query: 1   VMIGLGFYAVYSYTNHLKEXXXXXXXXXXXXXXXXXKTDYESRIGVLS----QQVKELQS 56
           ++I  G      Y+ H+++                 +  Y+ RI  +     +++ +L+S
Sbjct: 34  ILIAAGLTGAKLYSEHVQKQISADVERQTAAQIAEMQKQYDDRIAKVETGYKEELSQLES 93

Query: 57  TVDTFNELLTFTKDNASNKTDNSNKLYTQLNEVRKQLAALQKEMDLLK 104
            V+  NELLTFTKDNA  KTDNSNKLYTQLNEV+K+L  LQK +D+LK
Sbjct: 94  KVEALNELLTFTKDNADVKTDNSNKLYTQLNEVKKKLNELQKNLDVLK 141


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.312    0.127    0.333 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 440,842,521
Number of extensions: 12282501
Number of successful extensions: 65782
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 65780
Number of HSP's successfully gapped: 2
Length of query: 104
Length of database: 3,060,696,203
Length adjustment: 72
Effective length of query: 32
Effective length of database: 2,382,383,123
Effective search space: 76236259936
Effective search space used: 76236259936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)