BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0282.0008.p (355 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KB92.1 B3KB92_9BACI Exopolysaccharide biosynthesis protein 427 e-118 B1D8X1.1 B1D8X1_9BACL Exopolysaccharide biosynthesis protein-lik... 360 1e-97 C0ZFU4.1 C0ZFU4_BREBN Putative uncharacterized protein 202 4e-50 B1I1S0.1 B1I1S0_DESAP N-acetylglucosamine-1-phosphodiester alpha... 201 6e-50 C0V564.1 C0V564_9FIRM Exopolysaccharide biosynthesis protein 120 2e-25 >B3KB92.1 B3KB92_9BACI Exopolysaccharide biosynthesis protein Length = 361 Score = 427 bits (1098), Expect = e-118, Method: Compositional matrix adjust. Identities = 204/352 (57%), Positives = 260/352 (73%), Gaps = 2/352 (0%) Query: 6 KRVNRFFMLLTAPFLGLLLCLWWYQPPLDLNLDVGQFAAEPGPIKXXXXXXXXXXXXXXX 65 K++NR FML APF+G+LLC+W P L+ + ++ + Sbjct: 10 KQLNRTFMLAIAPFIGMLLCMWLITEPPRLSHETAEYIPSGSISEQSAVIKQDLDQAAVS 69 Query: 66 XXYTIHSISASAKLYNQTTNAMNALVQMAKTQAARPELIYNRRISSRLGIPADVARSDRI 125 TI SI +AKLY QTT + ++Q A++QAARPE IYNRRI+++LG+P + SDRI Sbjct: 70 AEQTISSIEKTAKLYRQTTATVGTILQTAESQAARPEQIYNRRITAKLGVPIETVNSDRI 129 Query: 126 TIELYRLNPGNYTAYAMKIKLKDPSAMKMSLAGDG--KGGAETTLQAANRYGATAGINAG 183 IELY++NPG Y YAMK+KLKDPSAMKMSL + G ETT++A +R+GA AGINAG Sbjct: 130 RIELYKINPGTYHGYAMKVKLKDPSAMKMSLGSESGRPGSVETTMRAVSRHGAVAGINAG 189 Query: 184 GFADRAGKRYPLSTTVIGGEYLYGFESTYKDLSFVGLNASGQLIGGKFYSRTQLDQLQPV 243 G+AD G R+PLSTT G+Y+ GF+ ++KDL+FVGL+ SG+LIGGKFYS++ LD+L P+ Sbjct: 190 GYADGNGGRHPLSTTFYDGKYVSGFQPSFKDLAFVGLSKSGKLIGGKFYSQSDLDRLDPM 249 Query: 244 FGATFVPVLLKNSVKVPIPAKWQLSPKRAPRTVIGKYKDDQLLVMVADGYNENGNSGATL 303 FGATFVPVLL+N K IP KW+ +P RAPRTVIG YKDDQLL++V +GY+E G SGATL Sbjct: 250 FGATFVPVLLQNGRKTTIPDKWKTTPGRAPRTVIGNYKDDQLLILVTEGYDEKGKSGATL 309 Query: 304 EELQNKLSNMGVIDAYNLDGGGSSSLIFNGRVINKPSDGNLRKVPTNFLFFK 355 +ELQ KL MGVIDAYNLDGGGS+SL+ NGRV+NKPSDG+LR VPT+FLFFK Sbjct: 310 QELQTKLKKMGVIDAYNLDGGGSASLVLNGRVVNKPSDGSLRPVPTHFLFFK 361 >B1D8X1.1 B1D8X1_9BACL Exopolysaccharide biosynthesis protein-like protein Length = 355 Score = 360 bits (924), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 188/355 (52%), Positives = 229/355 (64%) Query: 1 MMTPVKRVNRFFMLLTAPFLGLLLCLWWYQPPLDLNLDVGQFAAEPGPIKXXXXXXXXXX 60 M ++ +NR +L PF+ +LL L + L + Sbjct: 1 MTLSIRALNRTMLLACTPFVAMLLWLMVTNISIVLPDFPEAGTQQEAAADHTKSVASGLD 60 Query: 61 XXXXXXXYTIHSISASAKLYNQTTNAMNALVQMAKTQAARPELIYNRRISSRLGIPADVA 120 T SI KLYNQT M +V A TQA RP +IY+R I+ RLG P+ Sbjct: 61 QAHQTATATSASIKKQLKLYNQTNADMKQIVNTATTQANRPLVIYDRIITGRLGSPSGTI 120 Query: 121 RSDRITIELYRLNPGNYTAYAMKIKLKDPSAMKMSLAGDGKGGAETTLQAANRYGATAGI 180 SD++T +L+ + N+ +YAMKIKLK AMKM L D GGAETTL A RYGA AG+ Sbjct: 121 SSDKLTAQLFYIKADNFQSYAMKIKLKSGDAMKMVLGNDKVGGAETTLAAVQRYGAVAGV 180 Query: 181 NAGGFADRAGKRYPLSTTVIGGEYLYGFESTYKDLSFVGLNASGQLIGGKFYSRTQLDQL 240 NAGGFAD GKRYPLSTT++ G+Y+ GFE T DL FVGLNAS +L+GGKF S+ QLD L Sbjct: 181 NAGGFADGGGKRYPLSTTILNGDYVEGFEPTRADLFFVGLNASNKLVGGKFTSKQQLDNL 240 Query: 241 QPVFGATFVPVLLKNSVKVPIPAKWQLSPKRAPRTVIGKYKDDQLLVMVADGYNENGNSG 300 FGA+FVPVLLKN IP+KWQ SP RAPRTVI YKD QLL++VADG NE G+SG Sbjct: 241 NVKFGASFVPVLLKNGSPTTIPSKWQSSPTRAPRTVIANYKDGQLLIIVADGRNEGGSSG 300 Query: 301 ATLEELQNKLSNMGVIDAYNLDGGGSSSLIFNGRVINKPSDGNLRKVPTNFLFFK 355 ATL E+Q L +G +D YNLDGGGSSS+I+NGRVINKPSDG LRK+PT+FLFF+ Sbjct: 301 ATLAEMQILLQRLGAVDGYNLDGGGSSSMIWNGRVINKPSDGQLRKLPTHFLFFR 355 >C0ZFU4.1 C0ZFU4_BREBN Putative uncharacterized protein Length = 359 Score = 202 bits (514), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 126/363 (34%), Positives = 193/363 (53%), Gaps = 14/363 (3%) Query: 1 MMTPVKRVNRFFMLLTAPFLGLLLCLWWYQPPLD------LNLDVGQFAAEPGPIKXXXX 54 M+ + ++NRFF+ L AP LG L+ + P+D L L ++ + Sbjct: 1 MLPVLGKINRFFLFLLAPALGFLVA-FALDNPVDKLQTEGLKLSSAVAKSQADELGERLN 59 Query: 55 XXXXXXXXXXXXXYTIHSISA-SAKLYNQTTNAMNALVQMAKTQAARPELIYNRRISSRL 113 I S K Y Q +++ ++ +K+Q + + + +S+ L Sbjct: 60 DTKVQLRNVETVIEDIQDRSKKEQKEYEQQHKKISSALEASKSQTQKSADVLDTILSNML 119 Query: 114 GIPADVARSDRITIELYRLNPGNYTAYAMKIKLKDPSAMKMSLAGDG-KGGAETTLQAAN 172 G P T+++Y L G Y Y K++L DP+A+KM LA + K ETT QA Sbjct: 120 GKPIGQHFGKNSTVKVYSLQEGGYRGYMAKVRLNDPNALKMVLANNSVKSKGETTSQAGK 179 Query: 173 RYGATAGINAGGF-ADRAGKRYPLSTTVIGGEYLYGFESTYKDLSFVGLNASGQLIGGKF 231 R G+ INAGGF +D+ G PL TV+ G+ + F + K LSFVG N G L+G Sbjct: 180 RTGSILAINAGGFMSDKQGNLTPLGITVVDGK-IRTFSNNAK-LSFVGFNNKGHLVGTSI 237 Query: 232 YSRTQLDQLQPVFGATFVPVLLKNSVKVPIPAKWQLSPKRAPRTVIGKYKDDQLLVMVAD 291 ++ Q+ Q + GA+F+P LL+ ++PIP +W + R PRT+IG + + LL++V D Sbjct: 238 KTQAQITQQGILQGASFLPRLLQGGKRLPIPREW--ANARQPRTLIGHFDNGDLLLIVID 295 Query: 292 GYNENGNSGATLEELQNKLSNMGVIDAYNLDGGGSSSLIFNGRVINKPSDGNLRKVPTNF 351 G + ++G TLEE Q KL V+DAYNLDGGGSS+ +NG+++NKPS G R+V +N Sbjct: 296 GRRDGWSNGVTLEEAQRKLQEWHVVDAYNLDGGGSSAFYYNGKLLNKPSGGKERRVVSNL 355 Query: 352 LFF 354 + Sbjct: 356 VVM 358 >B1I1S0.1 B1I1S0_DESAP N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase-like exopolysaccharide biosynthesis protein Length = 345 Score = 201 bits (512), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 125/357 (35%), Positives = 189/357 (52%), Gaps = 24/357 (6%) Query: 5 VKRVNRFFMLLTAPFLGLLLCLWWY-QPPLDLNLDVGQFAAEPGPIKXXXXXXXXXXXXX 63 ++RVN FF L AP +G+L+ + + + L L V + G + Sbjct: 1 MRRVNLFFFFLAAPLIGVLIAVSSFSRGAQGLELPVAELQPAVGLL----------ADGV 50 Query: 64 XXXXYTIHSISASAKLYNQTTNAMNALVQ-MAKTQAARPEL---IYNRRISSRLGIPADV 119 YT+ S+ S + Q L++ +A A +L IY + I +LG P V Sbjct: 51 YQLRYTVGSVHESLEEQQQRYEEQQELLRTLAAKSAEHKQLSDDIYEQHILDKLGPPVRV 110 Query: 120 ARSDRITIELYRLNPGNYTAYAMKIKLKDPSAMKMSLAGDGKGGAETTLQAANRYGATAG 179 RS R+ ++++ L Y Y K+K DP ++++ +G ETT +A R GA G Sbjct: 111 HRSARVEVKIFELKGIGYRGYIAKVKPFDPGVLRVTYR---EGPGETTSEAVRRTGAVLG 167 Query: 180 INAGGF----ADRAGKRYPLSTTVIGGEYLYGFESTYKDLSFVGLNASGQLIGGKFYSRT 235 +N GGF D P+ T++ G+ + GF+ +DL F G + G+L+GG F RT Sbjct: 168 VNGGGFYRAPVDGLMHTLPIGNTMVDGKLVGGFQPPREDLFFAGFDGRGRLVGGIFNDRT 227 Query: 236 QLDQLQPVFGATFVPVLLKNSVKVPIPAKWQLSPKRAPRTVIGKYKDDQLLVMVADGYNE 295 L G +FVP+L+K+ VPIP KW+ +R PRT++G+Y + L+++V DG Sbjct: 228 ALLGTGARQGVSFVPILIKDRQPVPIPEKWR--NQRQPRTILGEYANGDLIMIVVDGRQA 285 Query: 296 NGNSGATLEELQNKLSNMGVIDAYNLDGGGSSSLIFNGRVINKPSDGNLRKVPTNFL 352 + +SG TLE+LQ L GVIDAYNLDGGGSS +F +++N+PSDG R V TN + Sbjct: 286 DWSSGVTLEDLQVTLIKFGVIDAYNLDGGGSSVFVFGNQILNRPSDGRERVVATNIV 342 >C0V564.1 C0V564_9FIRM Exopolysaccharide biosynthesis protein Length = 312 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 127/240 (52%), Gaps = 15/240 (6%) Query: 120 ARSDRITIELYRLNPGNYTAYAMKIKLKDPSAMKMSLAGDGKGGAETTLQAANRYGATAG 179 AR D+ T+ L ++ Y Y ++I DP +++ A + + +TT A A A Sbjct: 79 AREDK-TLNLEKIQSARYVGYILEIP--DPRRIQVGTAANIQEKGDTTSNIAKMNNAVAA 135 Query: 180 INAGGFADRAGK---RYPLSTTVIGGEYLYGFE-STYKDLSFVGLNASGQLIGGKFYSRT 235 IN GGF D G R P + GEY+ G + +D+ FVG + +G LI G Y++T Sbjct: 136 INGGGFHDPNGTGTGRLPYGFILHDGEYVIGKDVGPDEDVDFVGFSKAGNLIAGN-YNKT 194 Query: 236 QLDQLQPVFGATFVPVLLKNSVKVPIPAK--WQLSPKRAPRTVIGKYKDDQLLVMVADGY 293 QL ++ + G TF P L+ + K+ W + PRT IG+ KD +L +V DG Sbjct: 195 QLGDMKAMEGITFGPPLIVDGKKMITEGDGGWGV----GPRTAIGQKKDGTVLFLVIDGR 250 Query: 294 NENGNSGATLEELQNKLSNMGVIDAYNLDGGGSSSLIFNGRVINKPSD-GNLRKVPTNFL 352 + GATL ++Q+ L G A NLDGG SS+L NG+V+NKP+D R +PT F+ Sbjct: 251 QPGYSIGATLRDVQDILFEKGCYIAANLDGGSSSTLYLNGKVVNKPADLLGERMIPTAFI 310 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,083,888,395 Number of extensions: 88765705 Number of successful extensions: 212332 Number of sequences better than 1.0e-05: 162 Number of HSP's gapped: 212155 Number of HSP's successfully gapped: 162 Length of query: 355 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 218 Effective length of database: 1,770,017,148 Effective search space: 385863738264 Effective search space used: 385863738264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)