BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0282.0006.p
         (57 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DDH2.1 B1DDH2_9BACL Transcriptional regulator, AbrB family           97   6e-19
B8D2G6.1 B8D2G6_HALOH Transcriptional regulator, AbrB family           62   2e-08
C0ZHC1.1 C0ZHC1_BREBN Transition state regulatory protein              60   4e-08
B8D2B9.1 B8D2B9_HALOH Transcriptional regulator, AbrB family           58   3e-07
B9MM93.1 B9MM93_ANATD Transcriptional regulator, AbrB family           57   4e-07

>B1DDH2.1 B1DDH2_9BACL Transcriptional regulator, AbrB family
          Length = 83

 Score = 96.7 bits (239), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 43/53 (81%), Positives = 47/53 (88%)

Query: 1  MNEGDPVEILVQGDHIILERYRPKCVFCGSMEGVSEYKDRYICADCLTEMTQL 53
          MNEGDPVEILVQGDHIILERYRP+CVFCGSME V E+KDRY+C  C+ EM QL
Sbjct: 28 MNEGDPVEILVQGDHIILERYRPRCVFCGSMEEVKEFKDRYLCEPCMNEMGQL 80


>B8D2G6.1 B8D2G6_HALOH Transcriptional regulator, AbrB family
          Length = 86

 Score = 61.6 bits (148), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 35/50 (70%)

Query: 5  DPVEILVQGDHIILERYRPKCVFCGSMEGVSEYKDRYICADCLTEMTQLS 54
          DP+EI V  D IIL++Y P C+FCG+ E   +Y  ++IC DCL EM ++S
Sbjct: 32 DPMEIYVDEDTIILKKYEPACIFCGNAENTIDYMGKFICKDCLNEMVEVS 81


>C0ZHC1.1 C0ZHC1_BREBN Transition state regulatory protein
          Length = 82

 Score = 60.5 bits (145), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 36/50 (72%)

Query: 1  MNEGDPVEILVQGDHIILERYRPKCVFCGSMEGVSEYKDRYICADCLTEM 50
          + E D +EI V G+ IIL++Y P C+FCG+ + VS +K + +C DCLTEM
Sbjct: 29 IAEKDALEIYVDGERIILKKYEPACIFCGNADKVSHFKGKIVCQDCLTEM 78


>B8D2B9.1 B8D2B9_HALOH Transcriptional regulator, AbrB family
          Length = 80

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 36/52 (69%)

Query: 1  MNEGDPVEILVQGDHIILERYRPKCVFCGSMEGVSEYKDRYICADCLTEMTQ 52
          +++ DP+EI V  + IIL++Y P C+FCG+ +   E+K + IC +CL EM +
Sbjct: 28 IDKKDPMEIFVDDEKIILKKYEPACIFCGNADDTVEFKGKVICKNCLNEMAE 79


>B9MM93.1 B9MM93_ANATD Transcriptional regulator, AbrB family
          Length = 80

 Score = 57.4 bits (137), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 34/52 (65%)

Query: 1  MNEGDPVEILVQGDHIILERYRPKCVFCGSMEGVSEYKDRYICADCLTEMTQ 52
          + E D +EI V GD IIL +Y P C+FCG+ + V  YK + IC DC+ E+ +
Sbjct: 28 IAEKDALEIFVDGDKIILRKYEPACIFCGNAKDVIYYKGKNICKDCMEELKK 79


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.324    0.140    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 333,653,595
Number of extensions: 9291074
Number of successful extensions: 20262
Number of sequences better than 1.0e-05: 55
Number of HSP's gapped: 20262
Number of HSP's successfully gapped: 55
Length of query: 57
Length of database: 3,060,696,203
Length adjustment: 30
Effective length of query: 27
Effective length of database: 2,778,065,753
Effective search space: 75007775331
Effective search space used: 75007775331
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 125 (52.8 bits)