BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0282.0004.p (386 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q59196.3 SERC_BACCI Phosphoserine aminotransferase EC=2.6.1.52 588 e-166 B1DDH5.1 B1DDH5_9BACL Phosphoserine aminotransferase EC=2.6.1.52 500 e-139 C3J7D1.1 C3J7D1_9BACI Phosphoserine aminotransferase EC=2.6.1.52 468 e-130 B7YBH5.1 B7YBH5_9BACI Phosphoserine aminotransferase EC=2.6.1.52 468 e-130 B1HSU6.1 SERC_LYSSC Phosphoserine aminotransferase EC=2.6.1.52 468 e-130 >Q59196.3 SERC_BACCI Phosphoserine aminotransferase EC=2.6.1.52 Length = 362 Score = 588 bits (1516), Expect = e-166, Method: Compositional matrix adjust. Identities = 271/362 (74%), Positives = 318/362 (87%) Query: 25 LSKRAYNFNAGPAALPLTVLERAQAEFVDFRESGMSIMEMSHRGAIYESVHNEAQERLLS 84 +SKRAYNFNAGPAALPL VLERAQAEFVD++ +GMSIMEMSHRGA+YE+VHNEAQ RLL+ Sbjct: 1 MSKRAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLA 60 Query: 85 LLGNPQGYKVLFIQGGASTQFAMIPMNFVTEGKVGSYVMTGSWAEKAFKEAKLVGGAHAA 144 LLGNP GYKVLFIQGGASTQFAMIPMNF+ EG+ +YVMTGSWA KA KEAKL+G H A Sbjct: 61 LLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVA 120 Query: 145 ASSEDKKFLAIPELSSIKAADNAAYLHVTSNETIEGTQFAEYPDAGSIPLIADMSSDILS 204 ASSE ++ +P+L I+ DNAAYLH+TSNETIEG QF +PD GS+PLI DMSSDILS Sbjct: 121 ASSEASNYMTLPKLQEIQLQDNAAYLHLTSNETIEGAQFKAFPDTGSVPLIGDMSSDILS 180 Query: 205 RSFDVNQFELIYAGAQKNLGPSGVTVVIVKEELIAKSPSNIPTILRYDTHLKNNSLYNTP 264 R FD+NQF L+YAGAQKNLGPSGVTVVIV+E+L+A+SP ++PT+LRYDT++KNNSLYNTP Sbjct: 181 RPFDLNQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTP 240 Query: 265 PSFSVYMVNEVLKWIEEQGGLAGIEVKNRDKAALLYDHIDGSGGFYRGVAEAGSRSIMNV 324 PSF +YMVNEVLKWIEE+GGL G++ NR KA+L+YD ID SGGFYRG + SRS MN+ Sbjct: 241 PSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNI 300 Query: 325 TFRMQSEELEKQFVKAAEQEGFVGLKGHRSVGGLRASIYNAVPYESIKALSDFMKHFQQT 384 TFR+ SEELEK+FVKA+EQEGFVGLKGHRSVGGLRASIYNAVPYES +AL FM+HF+++ Sbjct: 301 TFRLASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRS 360 Query: 385 QG 386 +G Sbjct: 361 RG 362 >B1DDH5.1 B1DDH5_9BACL Phosphoserine aminotransferase EC=2.6.1.52 Length = 362 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 236/361 (65%), Positives = 289/361 (80%), Gaps = 1/361 (0%) Query: 27 KRAYNFNAGPAALPLTVLERAQAEFVDFRESGMSIMEMSHRGAIYESVHNEAQERLLSLL 86 KRAYNFNAGPAALPL VL++AQ +FV+++ +GMSIMEMSHR A+YE V+N++Q + L Sbjct: 2 KRAYNFNAGPAALPLEVLQQAQEQFVEYQGAGMSIMEMSHRSALYEQVNNDSQALMRELF 61 Query: 87 GNPQGYKVLFIQGGASTQFAMIPMNFVTEGKVGSYVMTGSWAEKAFKEAKLVGGAHAAAS 146 G P Y VLF+QGGAS QFAMIPMN ++ G+ +YV TG+WA+KA KEAKL+G AAS Sbjct: 62 GIPDNYHVLFLQGGASQQFAMIPMNLLSAGRPAAYVKTGAWADKAIKEAKLIGETVIAAS 121 Query: 147 SEDKKFLAIPELSSIKAADNAAYLHVTSNETIEGTQFAEYP-DAGSIPLIADMSSDILSR 205 SE+ F+ +P ++ I +NA+YLH+TSNETI G QF E+P + G++PL+ADMSSDILSR Sbjct: 122 SENDNFMRMPSMNEIVVPENASYLHLTSNETIGGVQFQEFPTNLGNVPLVADMSSDILSR 181 Query: 206 SFDVNQFELIYAGAQKNLGPSGVTVVIVKEELIAKSPSNIPTILRYDTHLKNNSLYNTPP 265 D+++F LIYAGAQKNLGPSGVTVVIV+++L+ +SP NIP I RYDTH KN SLYNTPP Sbjct: 182 PIDISKFGLIYAGAQKNLGPSGVTVVIVRDDLVQESPKNIPAIFRYDTHAKNKSLYNTPP 241 Query: 266 SFSVYMVNEVLKWIEEQGGLAGIEVKNRDKAALLYDHIDGSGGFYRGVAEAGSRSIMNVT 325 SFSVYMVN VLKWI+ GG+A +E NRDK L+YD ID S G+Y G A SRS+MN+T Sbjct: 242 SFSVYMVNLVLKWIKGNGGVAAMEQLNRDKTKLIYDAIDQSNGYYVGCAHQDSRSLMNIT 301 Query: 326 FRMQSEELEKQFVKAAEQEGFVGLKGHRSVGGLRASIYNAVPYESIKALSDFMKHFQQTQ 385 FRMQ+EELEKQFVK +EQ GFVGLKGHR VGGLRAS YNAVP+ES KAL+DFM FQ+ Sbjct: 302 FRMQNEELEKQFVKESEQNGFVGLKGHRDVGGLRASTYNAVPHESCKALADFMADFQRRN 361 Query: 386 G 386 G Sbjct: 362 G 362 >C3J7D1.1 C3J7D1_9BACI Phosphoserine aminotransferase EC=2.6.1.52 Length = 362 Score = 468 bits (1204), Expect = e-130, Method: Compositional matrix adjust. Identities = 217/357 (60%), Positives = 283/357 (79%), Gaps = 1/357 (0%) Query: 27 KRAYNFNAGPAALPLTVLERAQAEFVDFRESGMSIMEMSHRGAIYESVHNEAQERLLSLL 86 KRAYNFNAGP+ALPL VLERAQ E ++F+ +GMS+ME+SHR YE+VHN A+ERL LL Sbjct: 4 KRAYNFNAGPSALPLPVLERAQKELLNFQNTGMSVMELSHRSKEYEAVHNAAKERLKRLL 63 Query: 87 GNPQGYKVLFIQGGASTQFAMIPMNFVTEGKVGSYVMTGSWAEKAFKEAKLVGGAHAAAS 146 P GY +LF+QGGAS QF+M+PMN +TEGK+G YV+TG+W+EKA KEA+ +G AS Sbjct: 64 NVPDGYDILFLQGGASLQFSMVPMNLLTEGKIGCYVLTGAWSEKALKEAQKIGLTTVVAS 123 Query: 147 SEDKKFLAIPELSSIKAADNAAYLHVTSNETIEGTQFAEYPDAGSIPLIADMSSDILSRS 206 S++ + IP L ++ NAAY+H+TSN TI GTQ+ E+P+ + L+ADMSSDILSR Sbjct: 124 SKEANYTYIPPLDDVQWPKNAAYVHITSNNTIFGTQWKEFPNT-PVDLVADMSSDILSRP 182 Query: 207 FDVNQFELIYAGAQKNLGPSGVTVVIVKEELIAKSPSNIPTILRYDTHLKNNSLYNTPPS 266 FDV+QF LIYAGAQKNLGPSGVTVVI++ +L+ + P +PT+L Y TH K+NSLYNTPP+ Sbjct: 183 FDVSQFALIYAGAQKNLGPSGVTVVILRNDLLERIPDGLPTMLDYRTHQKSNSLYNTPPT 242 Query: 267 FSVYMVNEVLKWIEEQGGLAGIEVKNRDKAALLYDHIDGSGGFYRGVAEAGSRSIMNVTF 326 F++YM++ VL+W+EEQGG+A +E +N+ KAA+LY+ ID SGGFY+ AE GSRS+MNVTF Sbjct: 243 FAIYMLSLVLEWVEEQGGVAAMEERNQQKAAVLYEAIDESGGFYKPHAEKGSRSLMNVTF 302 Query: 327 RMQSEELEKQFVKAAEQEGFVGLKGHRSVGGLRASIYNAVPYESIKALSDFMKHFQQ 383 + +EEL K F+ A++ GFVGL GHRSVGG RASIYNAVP E+ +AL+ FM F++ Sbjct: 303 TLPNEELTKTFLAEAKERGFVGLGGHRSVGGCRASIYNAVPLEACEALASFMNEFRR 359 >B7YBH5.1 B7YBH5_9BACI Phosphoserine aminotransferase EC=2.6.1.52 Length = 362 Score = 468 bits (1204), Expect = e-130, Method: Compositional matrix adjust. Identities = 217/357 (60%), Positives = 283/357 (79%), Gaps = 1/357 (0%) Query: 27 KRAYNFNAGPAALPLTVLERAQAEFVDFRESGMSIMEMSHRGAIYESVHNEAQERLLSLL 86 KRAYNFNAGP+ALPL VLERAQ E ++F+ +GMS+ME+SHR YE+VHN A+ERL LL Sbjct: 4 KRAYNFNAGPSALPLPVLERAQKELLNFQNTGMSVMELSHRSKEYEAVHNAAKERLKRLL 63 Query: 87 GNPQGYKVLFIQGGASTQFAMIPMNFVTEGKVGSYVMTGSWAEKAFKEAKLVGGAHAAAS 146 P GY +LF+QGGAS QF+M+PMN +TEGK+G YV+TG+W+EKA KEA+ +G AS Sbjct: 64 NVPDGYDILFLQGGASLQFSMVPMNLLTEGKIGCYVLTGAWSEKALKEAQKIGLTTVVAS 123 Query: 147 SEDKKFLAIPELSSIKAADNAAYLHVTSNETIEGTQFAEYPDAGSIPLIADMSSDILSRS 206 S++ + IP L ++ NAAY+H+TSN TI GTQ+ E+P+ + L+ADMSSDILSR Sbjct: 124 SKEANYTYIPPLDDVQWPKNAAYVHITSNNTIFGTQWKEFPNT-PVDLVADMSSDILSRP 182 Query: 207 FDVNQFELIYAGAQKNLGPSGVTVVIVKEELIAKSPSNIPTILRYDTHLKNNSLYNTPPS 266 FDV+QF LIYAGAQKNLGPSGVTVVI++ +L+ + P +PT+L Y TH K+NSLYNTPP+ Sbjct: 183 FDVSQFALIYAGAQKNLGPSGVTVVILRNDLLERIPDGLPTMLDYRTHQKSNSLYNTPPT 242 Query: 267 FSVYMVNEVLKWIEEQGGLAGIEVKNRDKAALLYDHIDGSGGFYRGVAEAGSRSIMNVTF 326 F++YM++ VL+W+EEQGG+A +E +N+ KAA+LY+ ID SGGFY+ AE GSRS+MNVTF Sbjct: 243 FAIYMLSLVLEWVEEQGGVAAMEERNQQKAAVLYEAIDESGGFYKPHAEKGSRSLMNVTF 302 Query: 327 RMQSEELEKQFVKAAEQEGFVGLKGHRSVGGLRASIYNAVPYESIKALSDFMKHFQQ 383 + +EEL K F+ A++ GFVGL GHRSVGG RASIYNAVP E+ +AL+ FM F++ Sbjct: 303 TLPNEELTKTFLAEAKERGFVGLGGHRSVGGCRASIYNAVPLEACEALASFMNEFRR 359 >B1HSU6.1 SERC_LYSSC Phosphoserine aminotransferase EC=2.6.1.52 Length = 362 Score = 468 bits (1203), Expect = e-130, Method: Compositional matrix adjust. Identities = 215/359 (59%), Positives = 279/359 (77%) Query: 25 LSKRAYNFNAGPAALPLTVLERAQAEFVDFRESGMSIMEMSHRGAIYESVHNEAQERLLS 84 +++RAYNFNAGP+ALP VLE+AQ + VDFR+SGMSIMEMSHR AI++ VHNEA L Sbjct: 1 MTQRAYNFNAGPSALPQEVLEKAQQQLVDFRDSGMSIMEMSHRSAIFDEVHNEAIALLKK 60 Query: 85 LLGNPQGYKVLFIQGGASTQFAMIPMNFVTEGKVGSYVMTGSWAEKAFKEAKLVGGAHAA 144 L P+ Y+VLF+QGGAS QF M+PMNF++ + SYV++GSW+EKAFKEAK G A Sbjct: 61 LYAIPENYEVLFLQGGASLQFTMVPMNFLSTDQKASYVLSGSWSEKAFKEAKFFGTPVEA 120 Query: 145 ASSEDKKFLAIPELSSIKAADNAAYLHVTSNETIEGTQFAEYPDAGSIPLIADMSSDILS 204 AS++D ++ IP L+ I+ ++ AY+H+TSN TI GTQ+ +YPD G++PL+ADMSSDILS Sbjct: 121 ASTKDNQYRNIPALADIQFDEDDAYVHITSNNTIYGTQWRDYPDTGNVPLVADMSSDILS 180 Query: 205 RSFDVNQFELIYAGAQKNLGPSGVTVVIVKEELIAKSPSNIPTILRYDTHLKNNSLYNTP 264 + D+ +F LIYAGAQKNLGPSGVTVVI++++L+ K+ +IPT+L+Y TH +NSLYNTP Sbjct: 181 KPIDIQKFGLIYAGAQKNLGPSGVTVVIIRKDLLEKANKSIPTMLKYTTHADSNSLYNTP 240 Query: 265 PSFSVYMVNEVLKWIEEQGGLAGIEVKNRDKAALLYDHIDGSGGFYRGVAEAGSRSIMNV 324 P+F +YM+ EVLKW+E GG+ +E +N KA ++YD ID S GFY+G A SRS+MN+ Sbjct: 241 PTFGIYMLGEVLKWVESNGGVTAVEKRNELKAKVIYDAIDNSNGFYKGHATPESRSLMNI 300 Query: 325 TFRMQSEELEKQFVKAAEQEGFVGLKGHRSVGGLRASIYNAVPYESIKALSDFMKHFQQ 383 TFR+ EELEKQF+ A+ GFVGL GHRSVGG RAS YNAVP E+ +AL DFM FQQ Sbjct: 301 TFRVADEELEKQFLAEAKAAGFVGLNGHRSVGGCRASTYNAVPLEACEALRDFMVDFQQ 359 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.132 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,143,189,773 Number of extensions: 85878033 Number of successful extensions: 216638 Number of sequences better than 1.0e-05: 1104 Number of HSP's gapped: 214048 Number of HSP's successfully gapped: 1129 Length of query: 386 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 249 Effective length of database: 1,770,017,148 Effective search space: 440734269852 Effective search space used: 440734269852 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)