BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0282.0003.p (294 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KB86.1 B3KB86_9BACI Putative uncharacterized protein 294 7e-78 B4BF88.1 B4BF88_CLOTM Putative uncharacterized protein 256 1e-66 A3DDX1.1 A3DDX1_CLOTH Putative uncharacterized protein 256 1e-66 A8VQH9.1 A8VQH9_9BACI Putative uncharacterized protein 204 7e-51 A4AN56.1 A4AN56_9FLAO Putative uncharacterized protein 179 4e-43 >B3KB86.1 B3KB86_9BACI Putative uncharacterized protein Length = 294 Score = 294 bits (752), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 145/292 (49%), Positives = 188/292 (64%) Query: 1 MAYSLSNGILQIDIADVGEYSGTRFDWTGFITGVTLLEGGHTYCVPESLVPGHGSGGMGL 60 M + L+NG L+++IA VG Y GTRFD TGFIT V L E GHT+CV E + G GL Sbjct: 1 MGHQLANGRLEVEIAKVGRYQGTRFDRTGFITQVKLTESGHTFCVHEFAEGFNPQAGSGL 60 Query: 61 CNEFGISRAIGYEEAAAGEWFPKLGVGLLQKVSDEPYDFFGNYPLIPFKIEEERSAQSVT 120 CNEFG+ +GY EA G+WFPKLGVGLL++VS+ PY+F YP PF ++ +++ Sbjct: 61 CNEFGLHEGMGYAEAEVGDWFPKLGVGLLKRVSEAPYNFQYAYPAEPFDVDVISGDSNIS 120 Query: 121 YTVQPMECRGYSIRLTKKITLLEDRLNISYLLENMGDKPLHTEEYIHNFVGINGASVGPD 180 YTV+ GY+ RL KKI++ + L I Y L N G + + TEEY+HNF+GIN +VGP Sbjct: 121 YTVRSRSINGYAARLVKKISIEDTVLTIDYELINEGSRRIDTEEYVHNFIGINEEAVGPG 180 Query: 181 YELGIPAGLRVEDPESFYTADLLAVSGNSLTWKAEPERPFYCKLGIWNKMDDGCFWELRH 240 Y+L +P +R + ES YT+DLL+V N + W A P +PFY ++ +N D WEL H Sbjct: 181 YKLKLPVPVRFTEVESDYTSDLLSVQDNEIGWTARPHKPFYGRMKGFNGGDYPYSWELTH 240 Query: 241 KPSGAGVRESGDFAAERMALWGEKHVISPEVFVNISILPRHSKHWSRSYQFF 292 AGVRE DF MALWG HVISPEVFV +S+ P + WSR YQFF Sbjct: 241 SARRAGVREISDFPVAHMALWGTGHVISPEVFVRLSLTPGEKRSWSRKYQFF 292 >B4BF88.1 B4BF88_CLOTM Putative uncharacterized protein Length = 294 Score = 256 bits (655), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 120/291 (41%), Positives = 184/291 (63%), Gaps = 8/291 (2%) Query: 4 SLSNGILQIDIADVGE-YSGTRFDWTGFITGVTLLEGGHTYCVPESLVPGHGSGGMGLCN 62 +L NG L ++IA G Y+G+RFDWT FIT + +L+ +++C PES +PG GSGG GLCN Sbjct: 10 NLENGRLNVEIARSGSVYNGSRFDWTAFITKI-VLDNKYSFCAPESEIPGQGSGGFGLCN 68 Query: 63 EFGISRAIGYEEAAAGEWFPKLGVGLLQKVSDEPYDFFGNYPLIPFKIEEERSAQSVTYT 122 EFGI+ IGY+EA E FPKLG GLL + + Y FF Y + PF ++ +V + Sbjct: 69 EFGINTPIGYDEAKPQEKFPKLGTGLLTRPDESDYFFFDKYEVEPFPVKISADKNAVVFD 128 Query: 123 VQPMECRGYSIRLTKKITLLEDRLNISYLLENMGDKPLHTEEYIHNFVGINGASVGPDYE 182 V+P+ C GY++++TK +++ + L I Y LEN+G KP+ TEEY HNF+ +N +G Y Sbjct: 129 VEPVNCNGYAVKMTKTVSIEGNILTIDYHLENVGSKPIKTEEYCHNFISVNNKRIGDGYV 188 Query: 183 LGIPAGLRVEDPESFYTADLLAVSGNSLTWKAEPERPFYCKLGIWNKMDDGCFWELRHKP 242 L P ++ ++ +++ + GN + W P+ FYC++ + K + +WEL ++P Sbjct: 189 LKFPYNIKPKE-----IPEVMNIKGNEIRWNFVPKGDFYCQIEGF-KPGEKHYWELLYEP 242 Query: 243 SGAGVRESGDFAAERMALWGEKHVISPEVFVNISILPRHSKHWSRSYQFFT 293 G+RE +F ++A+WG HV+SPEVF+N+ I P ++ W R Y+FFT Sbjct: 243 ERVGIREYSEFEIVKVAVWGTTHVVSPEVFINVDIAPGKTQEWRRQYEFFT 293 >A3DDX1.1 A3DDX1_CLOTH Putative uncharacterized protein Length = 294 Score = 256 bits (655), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 120/291 (41%), Positives = 184/291 (63%), Gaps = 8/291 (2%) Query: 4 SLSNGILQIDIADVGE-YSGTRFDWTGFITGVTLLEGGHTYCVPESLVPGHGSGGMGLCN 62 +L NG L ++IA G Y+G+RFDWT FIT + +L+ +++C PES +PG GSGG GLCN Sbjct: 10 NLENGRLNVEIARPGSVYNGSRFDWTAFITKI-VLDNKYSFCAPESEIPGQGSGGFGLCN 68 Query: 63 EFGISRAIGYEEAAAGEWFPKLGVGLLQKVSDEPYDFFGNYPLIPFKIEEERSAQSVTYT 122 EFGI+ IGY+EA E FPKLG GLL + + Y FF Y + PF ++ +V + Sbjct: 69 EFGINTPIGYDEAKPQEKFPKLGTGLLTRPDESDYFFFDKYEVEPFPVKISADKNAVVFD 128 Query: 123 VQPMECRGYSIRLTKKITLLEDRLNISYLLENMGDKPLHTEEYIHNFVGINGASVGPDYE 182 V+P+ C GY++++TK +++ + L I Y LEN+G KP+ TEEY HNF+ +N +G Y Sbjct: 129 VEPVNCNGYAVKMTKTVSIEGNILTIDYHLENVGSKPIKTEEYCHNFISVNNKRIGDGYV 188 Query: 183 LGIPAGLRVEDPESFYTADLLAVSGNSLTWKAEPERPFYCKLGIWNKMDDGCFWELRHKP 242 L P ++ ++ +++ + GN + W P+ FYC++ + K + +WEL ++P Sbjct: 189 LKFPYNIKPKE-----IPEVMNIKGNEIRWNFVPKGDFYCQIEGF-KPGEKHYWELLYEP 242 Query: 243 SGAGVRESGDFAAERMALWGEKHVISPEVFVNISILPRHSKHWSRSYQFFT 293 G+RE +F ++A+WG HV+SPEVF+N+ I P ++ W R Y+FFT Sbjct: 243 ERVGIREYSEFEIVKVAVWGTTHVVSPEVFINVDIAPGKTQEWRRQYEFFT 293 >A8VQH9.1 A8VQH9_9BACI Putative uncharacterized protein Length = 291 Score = 204 bits (520), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 121/290 (41%), Positives = 161/290 (55%), Gaps = 8/290 (2%) Query: 5 LSNGILQIDIADVGE-YSGTRFDWTGFITGVTLLEGGHTYCVPESLVPGHGSGGMGLCNE 63 L N L+I++ G YSG RFDWTG I+ VTL +G YCVPE L G G+GG G CNE Sbjct: 3 LENERLKIEVQPPGTFYSGARFDWTGLISQVTL-DGTVQYCVPERLEEGEGTGGHGFCNE 61 Query: 64 FGISRAIGYEEAAAGEWFPKLGVGLLQKVSDEPYDFFGNYPLIPFKIEEERSAQSVTYTV 123 FG+ + +GYEE A G+ FPK+G GLL+K +D YD F Y ++P ++ + +V + V Sbjct: 62 FGLDQPVGYEETAPGQRFPKIGTGLLKKEADTAYDIFHPYEVVPASMKVIKEDDAVIFEV 121 Query: 124 QPMECRGYSIRLTKKITLLEDRLNISYLLENMGDKPLHTEEYIHNFVGINGASVGPDYEL 183 GY+ LTK + L RL +Y L N G KPL T EY HNF+G+N YEL Sbjct: 122 SQESPGGYAYHLTKTVRLEGTRLIQAYTLLNTGQKPLQTNEYSHNFIGMNDTLYNGSYEL 181 Query: 184 GIPAGLRVEDPESFYTADLLAVSGNSLTWKAEPERPFYCKLGIWNKMDDGCF-WELRHKP 242 IP GL D L+ G ++TW P Y L + + D + W+L H+ Sbjct: 182 TIP-GLESLD----VVVGELSQQGETVTWPVTPTDDVYAGLTLGTGVRDRTYHWDLYHRG 236 Query: 243 SGAGVRESGDFAAERMALWGEKHVISPEVFVNISILPRHSKHWSRSYQFF 292 AGVR+ F +MALWG HV PEVF+++ I P W R Y+F+ Sbjct: 237 LKAGVRDLSPFTPSKMALWGRAHVACPEVFIDLRIEPGERASWERVYEFY 286 >A4AN56.1 A4AN56_9FLAO Putative uncharacterized protein Length = 300 Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 109/301 (36%), Positives = 153/301 (50%), Gaps = 15/301 (4%) Query: 1 MAYSLSNGILQIDIADVGE-YSGTRFDWTGFITGVTLLEGGHTYCVPESLVP-----GHG 54 M Y L N L+I I GE YS +RFDWTG IT V + +P S+ Sbjct: 1 MPYKLKNKNLEIHIDLPGEGYSFSRFDWTGKITQVKF------HSIPLSISERLDRVNDT 54 Query: 55 SGGMGLCNEFGISRAIGYEEAAAGEWFPKLGVGLLQKVSDEPYDFFGNYPLIPFKIEEER 114 G G NEFGI A+GY + G WF K+G+GLLQK +E Y F + + P E Sbjct: 55 VFGKGFYNEFGIDSALGYNDIEIGGWFHKIGIGLLQK-EEEGYFFHKKHTIKPAAFEVIS 113 Query: 115 SAQSVTYTVQPMECRGYSIRLTKKITLLEDRLNISYLLENMGDKPLHTEEYIHNFVGING 174 + ++ + GY+ L K I L E I Y LEN G+K +HT EY+HNF+ IN Sbjct: 114 TRNTIKISCISENVNGYAYVLKKNIILNESGFKIKYHLENRGEKDIHTNEYVHNFMAINN 173 Query: 175 ASVGPDYELGIPAGLRVEDPESFYTAD-LLAVSGNSLTWKAEPERPFYCKLGIWNKMDDG 233 +G DY+L P L+ + + +++ N ++K P F+ K ++ D Sbjct: 174 EPIGSDYKLKFPFQLKPALFDEMVNKERQVSLGSNDFSFKGTPNEQFFFKFLSGSEEVDA 233 Query: 234 CFWELRHKPSGAGVRESGDFAAERMALWGEKHVISPEVFVNISILPRHSKHWSRSYQFFT 293 WEL + GV E G F ++ LWG KHV+SPE+F++I I P SK WSR ++ + Sbjct: 234 S-WELLNHKHKIGVSEKGSFKTNKVNLWGWKHVVSPELFIDIFIKPGQSKEWSRVFEVYK 292 Query: 294 L 294 L Sbjct: 293 L 293 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.139 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,013,872,051 Number of extensions: 92806698 Number of successful extensions: 153078 Number of sequences better than 1.0e-05: 12 Number of HSP's gapped: 153054 Number of HSP's successfully gapped: 12 Length of query: 294 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 160 Effective length of database: 1,798,280,193 Effective search space: 287724830880 Effective search space used: 287724830880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)