BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0280.0030.p (176 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KII1.1 B3KII1_9BACI Dipicolinic acid synthetase, B subunit 315 1e-84 C0ZF38.1 C0ZF38_BREBN Dipicolinate synthase B chain 271 2e-71 C5D9E0.1 C5D9E0_9BACI Dipicolinic acid synthetase, B subunit 236 6e-61 C3J5B9.1 C3J5B9_9BACI Dipicolinic acid synthetase, B subunit 233 6e-60 B7YER9.1 B7YER9_9BACI Dipicolinic acid synthetase, B subunit 233 6e-60 >B3KII1.1 B3KII1_9BACI Dipicolinic acid synthetase, B subunit Length = 196 Score = 315 bits (807), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 150/171 (87%), Positives = 164/171 (95%) Query: 1 MPQIQRFMEGGANVVPIVSASVLNTDTRFGTSENWLKQLKEITGNDIISTIVEAEPLGPS 60 MPQIQRF +GGANVVPIVS++++ TDTRFGTSENW KQLK+ITGNDIISTIVEAEPLGPS Sbjct: 23 MPQIQRFKDGGANVVPIVSSTIMTTDTRFGTSENWQKQLKDITGNDIISTIVEAEPLGPS 82 Query: 61 KLLDVLTIAPCTGNTTSKLANAMTDSPVLMAAKAQLRNSRPLVLAISTNDGLGLNAANIA 120 KLLDVL IAPCTGNTTSKLANAMTDSPVLMAAKAQ+RN RPLVLAISTNDGLGLNAANIA Sbjct: 83 KLLDVLVIAPCTGNTTSKLANAMTDSPVLMAAKAQMRNCRPLVLAISTNDGLGLNAANIA 142 Query: 121 KLLVAKNIYFVPFGQDNPQGKPNSLVAQMDLIPEACFAALQGQQLQPMIIE 171 KLLV KNIYFVP+GQDNPQ KPNSLVA+M+LIPEAC+AAL+G+QLQPMI+E Sbjct: 143 KLLVTKNIYFVPYGQDNPQQKPNSLVAKMNLIPEACYAALEGKQLQPMIVE 193 >C0ZF38.1 C0ZF38_BREBN Dipicolinate synthase B chain Length = 198 Score = 271 bits (693), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 127/174 (72%), Positives = 156/174 (89%) Query: 1 MPQIQRFMEGGANVVPIVSASVLNTDTRFGTSENWLKQLKEITGNDIISTIVEAEPLGPS 60 MPQI+RF++ GA VVPIVS +++ TDTRFGTS++W +Q+KE+TG ++ISTI +AEPLGPS Sbjct: 24 MPQIKRFVDAGARVVPIVSNTIMTTDTRFGTSQSWQQQIKELTGEELISTIPQAEPLGPS 83 Query: 61 KLLDVLTIAPCTGNTTSKLANAMTDSPVLMAAKAQLRNSRPLVLAISTNDGLGLNAANIA 120 KLLDV+ IAPCTG+TTS+LANA+TDS VLMAAKA +RN RP+V+AISTNDGLGLNAANIA Sbjct: 84 KLLDVMLIAPCTGSTTSRLANAITDSAVLMAAKATMRNLRPIVIAISTNDGLGLNAANIA 143 Query: 121 KLLVAKNIYFVPFGQDNPQGKPNSLVAQMDLIPEACFAALQGQQLQPMIIERFH 174 KLL AKN+YFVPFGQD P KPNSLVA+MDL+ E C AAL+G+QLQP++IERF+ Sbjct: 144 KLLAAKNMYFVPFGQDAPDKKPNSLVARMDLLLETCEAALEGRQLQPLLIERFN 197 >C5D9E0.1 C5D9E0_9BACI Dipicolinic acid synthetase, B subunit Length = 198 Score = 236 bits (602), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 109/174 (62%), Positives = 139/174 (79%) Query: 1 MPQIQRFMEGGANVVPIVSASVLNTDTRFGTSENWLKQLKEITGNDIISTIVEAEPLGPS 60 MP+I++ + GA V+PIV+ +V T+TRFG E W+K+L+EITGN++I TIV+AEPLGP Sbjct: 23 MPEIEKLVNEGAEVLPIVTYTVKTTNTRFGEGEEWVKKLEEITGNEVIDTIVKAEPLGPK 82 Query: 61 KLLDVLTIAPCTGNTTSKLANAMTDSPVLMAAKAQLRNSRPLVLAISTNDGLGLNAANIA 120 LD + IAP TGN+ SKLANAMTDSPVLMAAKA +RN RP+VL ISTND LGLN N+ Sbjct: 83 IPLDCMVIAPLTGNSMSKLANAMTDSPVLMAAKATMRNHRPVVLGISTNDALGLNGVNLM 142 Query: 121 KLLVAKNIYFVPFGQDNPQGKPNSLVAQMDLIPEACFAALQGQQLQPMIIERFH 174 +L+ AKNIYF+PFGQD P KPNS+VA+M L+ + AAL+G+QLQP+IIE+F Sbjct: 143 RLMAAKNIYFIPFGQDAPHTKPNSMVAKMSLLRDTVLAALEGRQLQPVIIEKFR 196 >C3J5B9.1 C3J5B9_9BACI Dipicolinic acid synthetase, B subunit Length = 201 Score = 233 bits (593), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 108/174 (62%), Positives = 138/174 (79%) Query: 1 MPQIQRFMEGGANVVPIVSASVLNTDTRFGTSENWLKQLKEITGNDIISTIVEAEPLGPS 60 P+I++ + GA V+PIV+ +V T+TRFG E W+K+L+++TGN++I TIV+AEPLGP Sbjct: 26 FPEIEKLVNEGAEVLPIVTYTVKTTNTRFGEGEEWVKKLEQLTGNEVIDTIVKAEPLGPK 85 Query: 61 KLLDVLTIAPCTGNTTSKLANAMTDSPVLMAAKAQLRNSRPLVLAISTNDGLGLNAANIA 120 LD + IAP TGN+ SKLANAMTDSPVLMAAKA +RN RP+VL ISTND LGLN N+ Sbjct: 86 IPLDCMVIAPLTGNSMSKLANAMTDSPVLMAAKATMRNHRPVVLGISTNDALGLNGVNLM 145 Query: 121 KLLVAKNIYFVPFGQDNPQGKPNSLVAQMDLIPEACFAALQGQQLQPMIIERFH 174 +L+ AKNIYF+PFGQD PQ KPNS+VA M L+ + AAL+G+QLQP+IIERF Sbjct: 146 RLMAAKNIYFIPFGQDAPQAKPNSMVAYMPLLRDTILAALEGKQLQPVIIERFR 199 >B7YER9.1 B7YER9_9BACI Dipicolinic acid synthetase, B subunit Length = 201 Score = 233 bits (593), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 108/174 (62%), Positives = 138/174 (79%) Query: 1 MPQIQRFMEGGANVVPIVSASVLNTDTRFGTSENWLKQLKEITGNDIISTIVEAEPLGPS 60 P+I++ + GA V+PIV+ +V T+TRFG E W+K+L+++TGN++I TIV+AEPLGP Sbjct: 26 FPEIEKLVNEGAEVLPIVTYTVKTTNTRFGEGEEWVKKLEQLTGNEVIDTIVKAEPLGPK 85 Query: 61 KLLDVLTIAPCTGNTTSKLANAMTDSPVLMAAKAQLRNSRPLVLAISTNDGLGLNAANIA 120 LD + IAP TGN+ SKLANAMTDSPVLMAAKA +RN RP+VL ISTND LGLN N+ Sbjct: 86 IPLDCMVIAPLTGNSMSKLANAMTDSPVLMAAKATMRNHRPVVLGISTNDALGLNGVNLM 145 Query: 121 KLLVAKNIYFVPFGQDNPQGKPNSLVAQMDLIPEACFAALQGQQLQPMIIERFH 174 +L+ AKNIYF+PFGQD PQ KPNS+VA M L+ + AAL+G+QLQP+IIERF Sbjct: 146 RLMAAKNIYFIPFGQDAPQAKPNSMVAYMPLLRDTILAALEGKQLQPVIIERFR 199 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.132 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 996,053,277 Number of extensions: 37494918 Number of successful extensions: 94150 Number of sequences better than 1.0e-05: 162 Number of HSP's gapped: 94154 Number of HSP's successfully gapped: 162 Length of query: 176 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 50 Effective length of database: 1,873,648,313 Effective search space: 93682415650 Effective search space used: 93682415650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)