BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0280.0028.p (302 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DLG6.1 B1DLG6_9BACL Dihydrodipicolinate synthase 400 e-110 B3KII4.1 B3KII4_9BACI Dihydrodipicolinate synthase 396 e-108 Q65JG7.1 Q65JG7_BACLD Dihydrodipicolinate synthase 317 1e-84 C3J5C2.1 C3J5C2_9BACI Dihydrodipicolinate synthase EC=4.2.1.52 315 2e-84 B7YES2.1 B7YES2_9BACI Dihydrodipicolinate synthase EC=4.2.1.52 315 2e-84 >B1DLG6.1 B1DLG6_9BACL Dihydrodipicolinate synthase Length = 290 Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust. Identities = 186/290 (64%), Positives = 232/290 (80%) Query: 12 VDFGRLITAMVTPFDRSGEINWEATSRLIDYLIEQKKSEALVVCGTTGESPTLSDEEKLE 71 +DFGRLITAMVTPFD +G+I+W+ T RLIDYLIE+++S+ LVV GTTGESPTL++EEK E Sbjct: 1 MDFGRLITAMVTPFDENGQIDWDTTGRLIDYLIEEQQSDTLVVSGTTGESPTLTEEEKAE 60 Query: 72 LFAYVLKKAAGRCKIIAGTGTNSTRHSIHLTKEAEKIGVDGVLLVVPYYNKPNQEGLYRH 131 LF Y +K AAGRCKIIAGTG+N+T HSIHLTK AE GVDGVLLV PYYNKPNQEGLY+H Sbjct: 61 LFRYAVKHAAGRCKIIAGTGSNNTAHSIHLTKVAEDAGVDGVLLVAPYYNKPNQEGLYQH 120 Query: 132 FAAIAGETKLPVILYNVPSRTSVSMSAATTLRLAGIPNIVATKECQSVDQITQIVSACPA 191 F AIA TKLPV+LYNVP RT +++S TTLRLA + N+VATK+C S DQ++QI++A P Sbjct: 121 FKAIAESTKLPVMLYNVPGRTGINISVETTLRLAELDNVVATKDCASSDQLSQIIAAAPD 180 Query: 192 DFRVYXXXXXXXXXXXXXXXYGIISVASHVVGEQMAEMIQAYFSGNVQRAGELHRKLFPV 251 FRVY YGI+SVASH++G +M ++I++Y SG+V++A +LH + +PV Sbjct: 181 SFRVYSGDDSATLPTLAIGGYGIVSVASHIIGTKMKQLIESYLSGDVKQAAKLHAECYPV 240 Query: 252 FKGLFECPQPLPNPSAVKYALGLRGVDVGTVRLPLVPPTEEEASFIAALL 301 FKGLFECP P+PNP AVKYAL LRG+ VG VRLPLV +E EA+FI+ L+ Sbjct: 241 FKGLFECPHPVPNPVAVKYALELRGMPVGGVRLPLVAASEAEAAFISKLV 290 >B3KII4.1 B3KII4_9BACI Dihydrodipicolinate synthase Length = 293 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 184/290 (63%), Positives = 228/290 (78%) Query: 12 VDFGRLITAMVTPFDRSGEINWEATSRLIDYLIEQKKSEALVVCGTTGESPTLSDEEKLE 71 +DFGRLITAMVTPFD++G+INW+ T+RLI++LI ++KS++LV+ GTTGESPTLS++EKLE Sbjct: 1 MDFGRLITAMVTPFDQNGQINWDETARLIEHLIVKQKSDSLVIAGTTGESPTLSEDEKLE 60 Query: 72 LFAYVLKKAAGRCKIIAGTGTNSTRHSIHLTKEAEKIGVDGVLLVVPYYNKPNQEGLYRH 131 LF + +K+A GR KIIAGTG+N+T HS LTK+AE GVDG+LLV PYYNKPNQEGLY+H Sbjct: 61 LFKFAVKQAGGRSKIIAGTGSNNTSHSAELTKKAESCGVDGILLVAPYYNKPNQEGLYQH 120 Query: 132 FAAIAGETKLPVILYNVPSRTSVSMSAATTLRLAGIPNIVATKECQSVDQITQIVSACPA 191 F AIA T LPV+LYNVP RT +S+S +TTLRLA IPNIVATKEC S+DQ+T I + P Sbjct: 121 FKAIAEATSLPVMLYNVPGRTGISLSTSTTLRLARIPNIVATKECASIDQVTGIAAGAPE 180 Query: 192 DFRVYXXXXXXXXXXXXXXXYGIISVASHVVGEQMAEMIQAYFSGNVQRAGELHRKLFPV 251 F VY YGI+SVASH+ G +M +MI+AY GNV+ A +LH+ LFP+ Sbjct: 181 GFIVYSGDDSAALPALSVGAYGIVSVASHIAGARMKDMIEAYVEGNVKEAAKLHQSLFPL 240 Query: 252 FKGLFECPQPLPNPSAVKYALGLRGVDVGTVRLPLVPPTEEEASFIAALL 301 FKGLFECP PLPNP+AVK+AL RG VG VRLPLV P+E EA+FI +L Sbjct: 241 FKGLFECPDPLPNPAAVKFALNERGYQVGGVRLPLVAPSENEAAFIRNML 290 >Q65JG7.1 Q65JG7_BACLD Dihydrodipicolinate synthase Length = 289 Score = 317 bits (811), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 156/291 (53%), Positives = 209/291 (71%), Gaps = 6/291 (2%) Query: 12 VDFGRLITAMVTPFDRSGEINWEATSRLIDYLIEQKKSEALVVCGTTGESPTLSDEEKLE 71 ++FG + TAMVTPFD++ I+++ S+LIDYL+ +++LVV GTTGESPTLS+EEK+ Sbjct: 1 MNFGNIATAMVTPFDKNENIDFQKLSKLIDYLL-NNGTDSLVVAGTTGESPTLSEEEKVA 59 Query: 72 LFAYVLKKAAGRCKIIAGTGTNSTRHSIHLTKEAEKIGVDGVLLVVPYYNKPNQEGLYRH 131 L Y +K+AAGR IIAGTG+N+T+ SI LTK+AE+ G D V+LV PYYNKP+QEG+YRH Sbjct: 60 LIQYSVKEAAGRAPIIAGTGSNNTKASIKLTKKAEEAGADAVMLVTPYYNKPSQEGMYRH 119 Query: 132 FAAIAGETKLPVILYNVPSRTSVSMSAATTLRLAGIPNIVATKECQ-SVDQITQIVSACP 190 F AIA ET LPV+LYNVP RT+ S++ TT+RLA IPNI+A KE +D IT+IV+ P Sbjct: 120 FRAIAEETSLPVMLYNVPGRTAASLAPETTIRLAEIPNIIAIKEASGDLDAITKIVAETP 179 Query: 191 ADFRVYXXXXXXXXXXXXXXXYGIISVASHVVGEQMAEMIQAYFSGNVQRAGELHRKLFP 250 DF VY GI+SVASH++G +M EMI+ Y GN +A +H+KL P Sbjct: 180 EDFAVYSGDDSLTLPALSVGARGIVSVASHIIGPEMQEMIKHYTEGNTAQAALIHQKLLP 239 Query: 251 VFKGLFECPQPLPNPSAVKYALGLRGVDVGTVRLPLVPPTEEEASFIAALL 301 + KGLF PNPS +K AL L+G+DVG+VRLPL+P E+E +++L+ Sbjct: 240 LMKGLFAA----PNPSPLKTALQLKGLDVGSVRLPLIPLNEDERLRLSSLM 286 >C3J5C2.1 C3J5C2_9BACI Dihydrodipicolinate synthase EC=4.2.1.52 Length = 291 Score = 315 bits (808), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 155/292 (53%), Positives = 206/292 (70%), Gaps = 6/292 (2%) Query: 12 VDFGRLITAMVTPFDRSGEINWEATSRLIDYLIEQKKSEALVVCGTTGESPTLSDEEKLE 71 V FG +ITAMVTPFDR G ++ T+ L++YL++ ++ALVV GTTGESPTL+ EEK+ Sbjct: 2 VQFGNIITAMVTPFDRKGNLDLAKTTELVNYLLDNG-TDALVVAGTTGESPTLTTEEKIA 60 Query: 72 LFAYVLKKAAGRCKIIAGTGTNSTRHSIHLTKEAEKIGVDGVLLVVPYYNKPNQEGLYRH 131 LF +V+ GR +IAGTGTN TR SI LTK+AE+ GVD V+LV PYYNKPNQEGLY+H Sbjct: 61 LFRHVVSVVNGRAPVIAGTGTNDTRASIELTKKAEEAGVDAVMLVAPYYNKPNQEGLYQH 120 Query: 132 FAAIAGETKLPVILYNVPSRTSVSMSAATTLRLAGIPNIVATKEC-QSVDQITQIVSACP 190 F AIA T+LPV+LYNVP RTSVS++ T +RL+ +PNIVA KE ++D + +I+ P Sbjct: 121 FKAIAESTRLPVMLYNVPGRTSVSLAPETVIRLSEVPNIVAVKEAGGNLDAMAEIIERTP 180 Query: 191 ADFRVYXXXXXXXXXXXXXXXYGIISVASHVVGEQMAEMIQAYFSGNVQRAGELHRKLFP 250 DF +Y G++SVASH++G +M EMI+++ +G+ Q+A LHRK P Sbjct: 181 DDFLLYSGDDSLTLPVLAIGGNGVVSVASHIIGNEMQEMIRSFLAGDHQKAAALHRKWLP 240 Query: 251 VFKGLFECPQPLPNPSAVKYALGLRGVDVGTVRLPLVPPTEEEASFIAALLE 302 + KGLF P P+P VK AL LRG+DVG+VRLPLVP E+E ++ LL+ Sbjct: 241 LMKGLFAAPSPVP----VKTALQLRGLDVGSVRLPLVPLAEQERKELSRLLD 288 >B7YES2.1 B7YES2_9BACI Dihydrodipicolinate synthase EC=4.2.1.52 Length = 291 Score = 315 bits (808), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 155/292 (53%), Positives = 206/292 (70%), Gaps = 6/292 (2%) Query: 12 VDFGRLITAMVTPFDRSGEINWEATSRLIDYLIEQKKSEALVVCGTTGESPTLSDEEKLE 71 V FG +ITAMVTPFDR G ++ T+ L++YL++ ++ALVV GTTGESPTL+ EEK+ Sbjct: 2 VQFGNIITAMVTPFDRKGNLDLAKTTELVNYLLDNG-TDALVVAGTTGESPTLTTEEKIA 60 Query: 72 LFAYVLKKAAGRCKIIAGTGTNSTRHSIHLTKEAEKIGVDGVLLVVPYYNKPNQEGLYRH 131 LF +V+ GR +IAGTGTN TR SI LTK+AE+ GVD V+LV PYYNKPNQEGLY+H Sbjct: 61 LFRHVVSVVNGRAPVIAGTGTNDTRASIELTKKAEEAGVDAVMLVAPYYNKPNQEGLYQH 120 Query: 132 FAAIAGETKLPVILYNVPSRTSVSMSAATTLRLAGIPNIVATKEC-QSVDQITQIVSACP 190 F AIA T+LPV+LYNVP RTSVS++ T +RL+ +PNIVA KE ++D + +I+ P Sbjct: 121 FKAIAESTRLPVMLYNVPGRTSVSLAPETVIRLSEVPNIVAVKEAGGNLDAMAEIIERTP 180 Query: 191 ADFRVYXXXXXXXXXXXXXXXYGIISVASHVVGEQMAEMIQAYFSGNVQRAGELHRKLFP 250 DF +Y G++SVASH++G +M EMI+++ +G+ Q+A LHRK P Sbjct: 181 DDFLLYSGDDSLTLPVLAIGGNGVVSVASHIIGNEMQEMIRSFLAGDHQKAAALHRKWLP 240 Query: 251 VFKGLFECPQPLPNPSAVKYALGLRGVDVGTVRLPLVPPTEEEASFIAALLE 302 + KGLF P P+P VK AL LRG+DVG+VRLPLVP E+E ++ LL+ Sbjct: 241 LMKGLFAAPSPVP----VKTALQLRGLDVGSVRLPLVPLAEQERKELSRLLD 288 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,653,719,579 Number of extensions: 65397564 Number of successful extensions: 160770 Number of sequences better than 1.0e-05: 3278 Number of HSP's gapped: 155337 Number of HSP's successfully gapped: 3279 Length of query: 302 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 167 Effective length of database: 1,788,859,178 Effective search space: 298739482726 Effective search space used: 298739482726 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)