BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0280.0026.p (562 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KII5.1 B3KII5_9BACI Beta-lactamase domain protein 963 0.0 B1DLG5.1 B1DLG5_9BACL Beta-lactamase domain protein 859 0.0 C0ZF34.1 C0ZF34_BREBN Putative uncharacterized protein 773 0.0 B1DEL7.1 B1DEL7_9BACL Beta-lactamase domain protein 769 0.0 C1PX00.1 C1PX00_ALIAC Putative uncharacterized protein 703 0.0 >B3KII5.1 B3KII5_9BACI Beta-lactamase domain protein Length = 559 Score = 963 bits (2489), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/562 (83%), Positives = 513/562 (91%), Gaps = 3/562 (0%) Query: 1 LSKKNNNDKLTIFALGGVGEIGKNMYVVQYGNDIVVVDAGLKFPEEDMLGIDIVIPDISY 60 +SKK ++DKL+IFALGGVGEIGKNMYV+QY DIVVVDAGLKFPEEDMLGIDIVIPDISY Sbjct: 1 MSKKISSDKLSIFALGGVGEIGKNMYVIQYAGDIVVVDAGLKFPEEDMLGIDIVIPDISY 60 Query: 61 LTENRDKVRGIVLTHGHEDHIGGLSYVLKNLNVPVYGTRLTLGLVENKLKEANLLGETKR 120 LTENRDKVRGI+LTHGHEDHIGGL YVLK+LNVPVYGT+LTLGLVENKL+EANLLGETKR Sbjct: 61 LTENRDKVRGILLTHGHEDHIGGLPYVLKHLNVPVYGTKLTLGLVENKLREANLLGETKR 120 Query: 121 ILINEDSEIELGSSLKVTFFRTNHSIPDSVGVCIETPEGNVVHTGDFKFDHTPVNGQFAN 180 ILI+ DSE++LG++LK TFF+TNHSIPDSVG+CIETPEGNVVHTGDFKFDHTPVN Q+A+ Sbjct: 121 ILIHADSEVQLGNTLKATFFKTNHSIPDSVGICIETPEGNVVHTGDFKFDHTPVNDQYAD 180 Query: 181 LHRMAEIGQRGVLALMSDSTNAEKPGFTPSEKNVGIVLEDIFRKAEQRVVVATFASNVHR 240 L RMAEIG +GVLAL+SDSTNAE+PGFTPSEKNVGIVLEDIFRKAEQRVVVATFASNVHR Sbjct: 181 LQRMAEIGSKGVLALLSDSTNAERPGFTPSEKNVGIVLEDIFRKAEQRVVVATFASNVHR 240 Query: 241 IQQVVNAAESTGRKITVIGRSMVNVVSIASELGYLHVPDGMLIEPEEMNRMAGNRVVVLC 300 IQQVVNAAESTGRKITVIGRSMVNVVSIA+ELGYLH+PDGMLIEPEE+N+MA +RVVVLC Sbjct: 241 IQQVVNAAESTGRKITVIGRSMVNVVSIAAELGYLHIPDGMLIEPEEVNKMAADRVVVLC 300 Query: 301 XXXXGSQGEPMSALTRMARSSHRKVDILPGDTVIIAATPVPGNEKYVGRTIDELFRLGAN 360 GSQGEPMSALTRMARS+HRKVDILPGDTVIIAATPVPGNEKYVGRTIDELFRLGA+ Sbjct: 301 ---TGSQGEPMSALTRMARSTHRKVDILPGDTVIIAATPVPGNEKYVGRTIDELFRLGAD 357 Query: 361 VIYXXXXXXXXXXXXXXQEELKLMLNLMKPKYFLPIHGEFRMQRRHALLAESVGVEPANI 420 VIY QEELKLMLNLMKP++F+P+HGE+RMQRRHALLAESVGV+P NI Sbjct: 358 VIYSGSNSGVHVSGHGSQEELKLMLNLMKPQFFIPVHGEYRMQRRHALLAESVGVDPDNI 417 Query: 421 FITELGEVIEISGGSARRAGKVTAXXXXXXXXXXXXXXXXXLRDRKLLSQDGILVVVVTL 480 FIT++GE++EI GGSAR+AGKVTA LRDRKLLSQDGILVVVVTL Sbjct: 418 FITDIGEIVEIQGGSARKAGKVTAGNVLIDGLGVGDVGNIVLRDRKLLSQDGILVVVVTL 477 Query: 481 SKQNGAIVSGPDIISRGFVYVRESEGLLDEANRIVSGTLQRLMSEKVNEWASLKTSVKDS 540 SKQNG+IVSGPDIISRGFVYVRESEGLLDEANRIVS TLQ+LMSE VNEWASLKTSVKD+ Sbjct: 478 SKQNGSIVSGPDIISRGFVYVRESEGLLDEANRIVSSTLQKLMSENVNEWASLKTSVKDA 537 Query: 541 LGRFLYEQTRRRPMILPIIMEV 562 LGRFLYEQTRRRPMILPIIMEV Sbjct: 538 LGRFLYEQTRRRPMILPIIMEV 559 >B1DLG5.1 B1DLG5_9BACL Beta-lactamase domain protein Length = 559 Score = 859 bits (2219), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/561 (74%), Positives = 486/561 (86%), Gaps = 6/561 (1%) Query: 4 KNNNDKLTIFALGGVGEIGKNMYVVQYGNDIVVVDAGLKFPEEDMLGIDIVIPDISYLTE 63 K N DKL +FALGGVGEIGKNMYV+QY NDIV+VDAGLKFPEEDMLGIDIVIPDISYLTE Sbjct: 3 KKNQDKLLVFALGGVGEIGKNMYVIQYSNDIVIVDAGLKFPEEDMLGIDIVIPDISYLTE 62 Query: 64 NRDKVRGIVLTHGHEDHIGGLSYVLKNLNVPVYGTRLTLGLVENKLKEANLLGETKRILI 123 NRDKVRGI++THGHEDHIGGLSYVL+ LNVPVYGT+LTLGL+E KLKEA LLGETKRI+I Sbjct: 63 NRDKVRGILITHGHEDHIGGLSYVLRQLNVPVYGTKLTLGLIEGKLKEAGLLGETKRIVI 122 Query: 124 NEDSEIELGSSLKVTFFRTNHSIPDSVGVCIETPEGNVVHTGDFKFDHTPVNGQFANLHR 183 + DSE++LG+ ++ +FF+TNHSIPDS+GV ++TPEG +VHTGDFKFD+TPVNGQ+A+L R Sbjct: 123 DADSEVQLGT-IQASFFKTNHSIPDSIGVALDTPEGTIVHTGDFKFDYTPVNGQYADLQR 181 Query: 184 MAEIGQRGVLALMSDSTNAEKPGFTPSEKNVGIVLEDIFRKAEQRVVVATFASNVHRIQQ 243 MAEIG++GVLAL+SDSTNAE+PGFTPSEKNVG LEDIF K+ QRVVVATFASNVHRIQQ Sbjct: 182 MAEIGKKGVLALLSDSTNAERPGFTPSEKNVGEELEDIFHKSSQRVVVATFASNVHRIQQ 241 Query: 244 VVNAAESTGRKITVIGRSMVNVVSIASELGYLHVPDGMLIEPEEMNRMAGNRVVVLCXXX 303 V+NAA +T R + V+GRSMVNVV+IAS+LGYLH+P+GM+IEPEE+N++A +RVV+LC Sbjct: 242 VINAAIATKRYVAVVGRSMVNVVTIASDLGYLHIPEGMIIEPEEVNKLAADRVVILC--- 298 Query: 304 XGSQGEPMSALTRMARSSHRKVDILPGDTVIIAATPVPGNEKYVGRTIDELFRLGANVIY 363 GSQGEPMSALTRMARS+HRKVDILPGDTVIIAATP+PGNE+YVGRT+DELFRLGA+VIY Sbjct: 299 TGSQGEPMSALTRMARSTHRKVDILPGDTVIIAATPIPGNERYVGRTVDELFRLGAHVIY 358 Query: 364 X-XXXXXXXXXXXXXQEELKLMLNLMKPKYFLPIHGEFRMQRRHALLAESVGVEPANIFI 422 QEELKLMLNL+KPKYF+PIHGE+RM R+HA L E+VG+E ++IF+ Sbjct: 359 GPGSISGVHVSGHGSQEELKLMLNLIKPKYFIPIHGEYRMLRQHAQLGEAVGIERSHIFV 418 Query: 423 TELGEVIEISGGSARRAGKVTAXXXXXXXXXXXXXXXXXLRDRKLLSQDGILVVVVTLSK 482 E GE +E GG AR+ KV A LRDRKLLSQDGILVVVVTLSK Sbjct: 419 IENGETVEFQGGLARKGSKVQAGNILIDGLGVGDVGNIVLRDRKLLSQDGILVVVVTLSK 478 Query: 483 QN-GAIVSGPDIISRGFVYVRESEGLLDEANRIVSGTLQRLMSEKVNEWASLKTSVKDSL 541 Q+ G+IVSGPDIISRGFVYVRESEGLLDEAN+IV+ TL +LM +KVNEWASLKT+VKD+L Sbjct: 479 QDGGSIVSGPDIISRGFVYVRESEGLLDEANKIVTSTLNKLMHDKVNEWASLKTNVKDAL 538 Query: 542 GRFLYEQTRRRPMILPIIMEV 562 GRFLYEQTRRRPMILPIIMEV Sbjct: 539 GRFLYEQTRRRPMILPIIMEV 559 >C0ZF34.1 C0ZF34_BREBN Putative uncharacterized protein Length = 558 Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/559 (68%), Positives = 453/559 (81%), Gaps = 6/559 (1%) Query: 6 NNDKLTIFALGGVGEIGKNMYVVQYGNDIVVVDAGLKFPEEDMLGIDIVIPDISYLTENR 65 +N + +FALGGVGEIGKNMYVVQ G+DIVV+DAGLKFPEE+MLGID+VIPDI+YL E+R Sbjct: 4 SNHSVLVFALGGVGEIGKNMYVVQSGDDIVVIDAGLKFPEEEMLGIDMVIPDITYLEEHR 63 Query: 66 DKVRGIVLTHGHEDHIGGLSYVLKNLNVPVYGTRLTLGLVENKLKEANLLGETKRILINE 125 DKVRGI++THGHEDHIGGLSYVLK+L VPVY T+LTLGL++ KLKEA +L ETKR+LIN Sbjct: 64 DKVRGIIITHGHEDHIGGLSYVLKHLKVPVYATKLTLGLIDAKLKEAGILNETKRVLINS 123 Query: 126 DSEIELGSSLKVTFFRTNHSIPDSVGVCIETPEGNVVHTGDFKFDHTPVNGQFANLHRMA 185 DSE+ LG +K TFFR NHSIPD VGVC++TPEG +VHTGDFKFD TPVN Q A+L +MA Sbjct: 124 DSEVILGK-MKATFFRVNHSIPDCVGVCLDTPEGYIVHTGDFKFDQTPVNNQVADLAKMA 182 Query: 186 EIGQRGVLALMSDSTNAEKPGFTPSEKNVGIVLEDIFRKAEQRVVVATFASNVHRIQQVV 245 IG RGVL L+SDSTNAE+PGFT SE++VG L D+F KA R+VV+TFASNVHRIQQVV Sbjct: 183 MIGDRGVLCLLSDSTNAERPGFTGSERSVGKALMDVFSKASGRIVVSTFASNVHRIQQVV 242 Query: 246 NAAESTGRKITVIGRSMVNVVSIASELGYLHVPDGMLIEPEEMNRMAGNRVVVLCXXXXG 305 +AA RK+TV+GRSM NV++I+ +LGYL VP+G+++E +E+N++ +VV+L G Sbjct: 243 DAAAQFNRKLTVVGRSMQNVINISRDLGYLLVPEGLIVEIDEINKLPAEQVVILS---TG 299 Query: 306 SQGEPMSALTRMARSSHRKVDILPGDTVIIAATPVPGNEKYVGRTIDELFRLGANVIYXX 365 SQGEPMSALTRMARS+HRK+DILPGDTVIIAATP+PGNEKYV RTID+L R+GA+VIY Sbjct: 300 SQGEPMSALTRMARSAHRKIDILPGDTVIIAATPIPGNEKYVARTIDQLSRIGADVIYGG 359 Query: 366 X--XXXXXXXXXXXQEELKLMLNLMKPKYFLPIHGEFRMQRRHALLAESVGVEPANIFIT 423 QEEL+LMLNLMKPKYF+P+HGE+RM + HALLA+ VG+ N F+ Sbjct: 360 HGPNGTVHVSGHGSQEELRLMLNLMKPKYFIPVHGEYRMLKTHALLADQVGIPEENTFLL 419 Query: 424 ELGEVIEISGGSARRAGKVTAXXXXXXXXXXXXXXXXXLRDRKLLSQDGILVVVVTLSKQ 483 + G+ +E SGG AR GKV A LRDRKLLSQDGILVVVVTLSKQ Sbjct: 420 DNGDTVEFSGGKARYGGKVHAGNVLIDGLGVGDVGNIVLRDRKLLSQDGILVVVVTLSKQ 479 Query: 484 NGAIVSGPDIISRGFVYVRESEGLLDEANRIVSGTLQRLMSEKVNEWASLKTSVKDSLGR 543 NG I+SGPDIISRGFVYVRESE LLDEANRIV+ TL + M E VNEW+SLK +VK+SLGR Sbjct: 480 NGTILSGPDIISRGFVYVRESEELLDEANRIVTQTLVKCMEENVNEWSSLKNNVKESLGR 539 Query: 544 FLYEQTRRRPMILPIIMEV 562 +LYEQTRRRPMILPIIMEV Sbjct: 540 YLYEQTRRRPMILPIIMEV 558 >B1DEL7.1 B1DEL7_9BACL Beta-lactamase domain protein Length = 559 Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/563 (66%), Positives = 458/563 (81%), Gaps = 5/563 (0%) Query: 1 LSKKNNNDKLTIFALGGVGEIGKNMYVVQYGNDIVVVDAGLKFPEEDMLGIDIVIPDISY 60 ++ KLTIFALGGVGEIGKNMY VQY NDI+V+D G KFP+E++LGIDI++PDI+Y Sbjct: 1 MNNHKTEKKLTIFALGGVGEIGKNMYAVQYANDIIVIDCGSKFPDEELLGIDIIVPDITY 60 Query: 61 LTENRDKVRGIVLTHGHEDHIGGLSYVLKNLNVPVYGTRLTLGLVENKLKEANLLGETKR 120 L EN+DKVR +++THGHEDHIGGL Y+LK L++PVY +RLT+GL+E KLKEA LLG T+R Sbjct: 61 LIENKDKVRALLITHGHEDHIGGLPYILKQLSMPVYASRLTMGLIEGKLKEAGLLGSTER 120 Query: 121 ILINEDSEIELGSSLKVTFFRTNHSIPDSVGVCIETPEGNVVHTGDFKFDHTPVNGQFAN 180 LI+ DSE++LGS +K +FF+TNHSIPDS+GV ++TPEG VVHTGDFKFD TPV A+ Sbjct: 121 HLIHSDSELKLGS-MKASFFKTNHSIPDSLGVVLDTPEGVVVHTGDFKFDQTPVGDYHAD 179 Query: 181 LHRMAEIGQRGVLALMSDSTNAEKPGFTPSEKNVGIVLEDIFRKAEQRVVVATFASNVHR 240 +HRMAEIG++GVLAL+S+STNAE+PGFTPSE+ VG D FRKAE+RV+V+TFASNVHR Sbjct: 180 IHRMAEIGKKGVLALLSESTNAERPGFTPSERIVGANFIDAFRKAERRVIVSTFASNVHR 239 Query: 241 IQQVVNAAESTGRKITVIGRSMVNVVSIASELGYLHVPDGMLIEPEEMNRMAGNRVVVLC 300 +QQVV+AA ++GRK+ +IGRSMVN+++IASELGYL +PDGMLIE E+NR A N+VV+LC Sbjct: 240 LQQVVDAAAASGRKLAIIGRSMVNMITIASELGYLDIPDGMLIETNEVNRYADNQVVILC 299 Query: 301 XXXXGSQGEPMSALTRMARSSHRKVDILPGDTVIIAATPVPGNEKYVGRTIDELFRLGAN 360 GSQGEPMSALTRMARS+HR+V+IL GDTVII+ATP+PGNE+ +GRT+DELFRLGAN Sbjct: 300 ---TGSQGEPMSALTRMARSNHRQVEILEGDTVIISATPIPGNERSIGRTVDELFRLGAN 356 Query: 361 VIY-XXXXXXXXXXXXXXQEELKLMLNLMKPKYFLPIHGEFRMQRRHALLAESVGVEPAN 419 VIY QEELKLML LM PKYF+PIHGE+RMQ H LAE+VGVE N Sbjct: 357 VIYGSGTQTGMHVSGHGSQEELKLMLQLMAPKYFIPIHGEYRMQLHHKKLAEAVGVEQGN 416 Query: 420 IFITELGEVIEISGGSARRAGKVTAXXXXXXXXXXXXXXXXXLRDRKLLSQDGILVVVVT 479 FI + GE++EI G AR++GKV A LRDRK LSQDGILVVVVT Sbjct: 417 TFIVDNGEIVEIVNGDARKSGKVPAGNTYIDGLGIGDVGNIVLRDRKHLSQDGILVVVVT 476 Query: 480 LSKQNGAIVSGPDIISRGFVYVRESEGLLDEANRIVSGTLQRLMSEKVNEWASLKTSVKD 539 +SKQ+ I SGPDIISRGFVYVRESEGLL+EA RIV+ T+ + +S+ VN+W +LK++VKD Sbjct: 477 ISKQDKTIKSGPDIISRGFVYVRESEGLLEEAGRIVTRTITKSISDNVNQWTTLKSNVKD 536 Query: 540 SLGRFLYEQTRRRPMILPIIMEV 562 +LGRFLYEQT+R+PMILPIIMEV Sbjct: 537 ALGRFLYEQTKRKPMILPIIMEV 559 >C1PX00.1 C1PX00_ALIAC Putative uncharacterized protein Length = 551 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/556 (61%), Positives = 435/556 (78%), Gaps = 9/556 (1%) Query: 6 NNDKLTIFALGGVGEIGKNMYVVQYGNDIVVVDAGLKFPEEDMLGIDIVIPDISYLTENR 65 + +L+I LGGVGEIGKNM + YG D++VVDAGLKFP+EDMLGIDIVIPDI++L ENR Sbjct: 4 SKSRLSIIPLGGVGEIGKNMTLYWYGQDMIVVDAGLKFPDEDMLGIDIVIPDITFLVENR 63 Query: 66 DKVRGIVLTHGHEDHIGGLSYVLKNLNVPVYGTRLTLGLVENKLKEANLLGETKRILINE 125 +K+RGI LTHGHEDHIGGL YVL+ +NVPVYGTRLTLGLVENKL+EA + + K I ++ Sbjct: 64 EKIRGIFLTHGHEDHIGGLPYVLREINVPVYGTRLTLGLVENKLREAGV-HDVKLITMDG 122 Query: 126 DSEIELGSSLKVTFFRTNHSIPDSVGVCIETPEGNVVHTGDFKFDHTPVNGQFANLHRMA 185 S ++LG V+ F NHSIPD+VG IETPEG V+HTGD+KFD TP++G+ A++H++A Sbjct: 123 KSRVQLGQ-FAVSPFYVNHSIPDTVGFAIETPEGIVIHTGDYKFDQTPIDGRHADIHKLA 181 Query: 186 EIGQRGVLALMSDSTNAEKPGFTPSEKNVGIVLEDIFRKAEQRVVVATFASNVHRIQQVV 245 + G RGVLAL+ DSTNAE+PG+TPSE VGI +++I +A RV+++TFASN+HR+Q ++ Sbjct: 182 QWGARGVLALVGDSTNAERPGYTPSEMTVGIKIDEIISQAPGRVILSTFASNIHRLQLMI 241 Query: 246 NAAESTGRKITVIGRSMVNVVSIASELGYLHVPDGMLIEPEEMNRMAGNRVVVLCXXXXG 305 AAE GRK+ ++GRSMVN V + +LGYL L++P+E+N++ +VV+L G Sbjct: 242 RAAERHGRKVAIVGRSMVNNVQTSLQLGYLEAQPDTLVDPDEVNKLPPEKVVILS---TG 298 Query: 306 SQGEPMSALTRMARSSHRKVDILPGDTVIIAATPVPGNEKYVGRTIDELFRLGANVIYXX 365 SQGEPMSALTRMAR++HRK++I+PGDTV++A++P+PGNEK+V RTID+LFR GA+VIY Sbjct: 299 SQGEPMSALTRMARAAHRKIEIVPGDTVVLASSPIPGNEKFVARTIDQLFRAGAHVIY-- 356 Query: 366 XXXXXXXXXXXXQEELKLMLNLMKPKYFLPIHGEFRMQRRHALLAESVGVEPANIFITEL 425 QEELK ML L++PKYFLP+HGEFRMQR HA LA +G++P +IFITE+ Sbjct: 357 --RGVHASGHGSQEELKWMLQLVRPKYFLPVHGEFRMQRIHADLAMQLGIQPDHIFITEI 414 Query: 426 GEVIEISGGSARRAGKVTAXXXXXXXXXXXXXXXXXLRDRKLLSQDGILVVVVTLSKQNG 485 G+V+E G AR GKV A LRDRKLLSQDGILVVVVTLSK G Sbjct: 415 GDVVEFEDGRARLGGKVPAGSVMIDGLGVGDVGNIVLRDRKLLSQDGILVVVVTLSKTTG 474 Query: 486 AIVSGPDIISRGFVYVRESEGLLDEANRIVSGTLQRLMSEKVNEWASLKTSVKDSLGRFL 545 I+SGPDIISRGFVYVRESE LLDEANR+V TL +L+S+ V+EW+SLKT+V+D+LGR+L Sbjct: 475 HILSGPDIISRGFVYVRESEALLDEANRLVESTLSKLVSDNVSEWSSLKTAVRDTLGRYL 534 Query: 546 YEQTRRRPMILPIIME 561 YEQTRRRPMILPIIME Sbjct: 535 YEQTRRRPMILPIIME 550 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,022,866,382 Number of extensions: 121377867 Number of successful extensions: 316953 Number of sequences better than 1.0e-05: 1463 Number of HSP's gapped: 310609 Number of HSP's successfully gapped: 1467 Length of query: 562 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 421 Effective length of database: 1,732,333,088 Effective search space: 729312230048 Effective search space used: 729312230048 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)