BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0280.0024.p (270 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZF33.1 C0ZF33_BREBN Translocation-enhancing protein 323 7e-87 B1DLG4.1 B1DLG4_9BACL Peptidase S14 ClpP 323 1e-86 Q9KA93.1 TEPA_BACHD Translocation-enhancing protein tepA 311 3e-83 C2U133.1 C2U133_BACCE Translocation-enhancing protein tepA 311 5e-83 Q5WFV8.1 Q5WFV8_BACSK Translocation-enhancing protein TepA 311 5e-83 >C0ZF33.1 C0ZF33_BREBN Translocation-enhancing protein Length = 274 Score = 323 bits (829), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 153/219 (69%), Positives = 189/219 (86%), Gaps = 2/219 (0%) Query: 47 VKELGQTAVPTGEPDIFCITIIGQIEGHFVLPPHNKTTKYEHIIPQLVAAEQSKTIKGLL 106 + +LGQT VP E +I+C+TIIGQ+EGH LPP NKTTKYEH+IPQLVAAEQ+ I+G+L Sbjct: 58 ITQLGQTNVPQLESNIYCMTIIGQVEGHIQLPPQNKTTKYEHLIPQLVAAEQNNKIEGVL 117 Query: 107 IILNTVGGDVEAGLAIAEMIASLSKPTVTVVIGGGHSIGVPIAVASSYSIIAESATMTIH 166 +ILNTVGGDVEAGLAIAEM+ASLSKP VT+V+GGGHSIGVPIAVA SYS IAE+ATMTIH Sbjct: 118 VILNTVGGDVEAGLAIAEMVASLSKPVVTLVLGGGHSIGVPIAVAGSYSFIAETATMTIH 177 Query: 167 PIRMNGLVIGVPQTFEYMERMQERMVRFVTSHSRISEQQFKDLMFRTGELNRDIGTAVGG 226 PIR+ GLVIGVPQTFEY+++MQ+R+V F+ HS++SE++F++LM RTGEL RDIGT V G Sbjct: 178 PIRLTGLVIGVPQTFEYLDKMQDRVVSFIARHSKVSEEKFRELMTRTGELTRDIGTNVIG 237 Query: 227 YDAVKYGLMDEVGGIGAALSRLNGMIAGETGQLVEQVMQ 265 DAVKYGL+DEVGG+G+AL +LN +I + G+ E V+Q Sbjct: 238 VDAVKYGLIDEVGGLGSALKKLNELIKAQKGE--ESVLQ 274 >B1DLG4.1 B1DLG4_9BACL Peptidase S14 ClpP Length = 247 Score = 323 bits (827), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 151/207 (72%), Positives = 182/207 (87%) Query: 47 VKELGQTAVPTGEPDIFCITIIGQIEGHFVLPPHNKTTKYEHIIPQLVAAEQSKTIKGLL 106 +++LGQT P E +IFC+TIIGQ+EGH VLPP NKTTKYEH+IPQLVAAEQ+ I+G+L Sbjct: 29 IQQLGQTTTPASESNIFCMTIIGQVEGHIVLPPQNKTTKYEHLIPQLVAAEQNSKIEGIL 88 Query: 107 IILNTVGGDVEAGLAIAEMIASLSKPTVTVVIGGGHSIGVPIAVASSYSIIAESATMTIH 166 I+LNTVGGDVEAGLAIAEMI+SLSKPTVT+V+GGGHSIGVPIAVA + S IA +ATMTIH Sbjct: 89 IVLNTVGGDVEAGLAIAEMISSLSKPTVTLVLGGGHSIGVPIAVAGNMSFIAATATMTIH 148 Query: 167 PIRMNGLVIGVPQTFEYMERMQERMVRFVTSHSRISEQQFKDLMFRTGELNRDIGTAVGG 226 PIR+NGLVIGVPQTFEY+++MQER+++FVT HS ++E++FK+LMF+TGEL RDIGT V G Sbjct: 149 PIRLNGLVIGVPQTFEYLDKMQERILKFVTMHSNVTEEKFKELMFKTGELTRDIGTTVIG 208 Query: 227 YDAVKYGLMDEVGGIGAALSRLNGMIA 253 DAVKYGL+D VGG+G AL LN IA Sbjct: 209 SDAVKYGLIDAVGGLGDALRELNSRIA 235 >Q9KA93.1 TEPA_BACHD Translocation-enhancing protein tepA Length = 256 Score = 311 bits (798), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 151/207 (72%), Positives = 180/207 (86%), Gaps = 1/207 (0%) Query: 47 VKELGQTAVPTGE-PDIFCITIIGQIEGHFVLPPHNKTTKYEHIIPQLVAAEQSKTIKGL 105 +++LGQT VP E +I CIT++GQIEGH LPP NKTTKYEHIIPQLVAAEQ+K I+GL Sbjct: 36 IQQLGQTNVPEMEQSNIHCITVVGQIEGHMQLPPQNKTTKYEHIIPQLVAAEQNKKIEGL 95 Query: 106 LIILNTVGGDVEAGLAIAEMIASLSKPTVTVVIGGGHSIGVPIAVASSYSIIAESATMTI 165 LIILNTVGGDVEAGLAIAEM+A++SKPTVT+V+GGGHSIGVPIAVA++YS IAE+ATMTI Sbjct: 96 LIILNTVGGDVEAGLAIAEMVATMSKPTVTLVLGGGHSIGVPIAVAANYSFIAETATMTI 155 Query: 166 HPIRMNGLVIGVPQTFEYMERMQERMVRFVTSHSRISEQQFKDLMFRTGELNRDIGTAVG 225 HP+R+ GLVIGVPQTFEY+++MQER+V FVT HS ISE++FK+LMF G L RDIGT V Sbjct: 156 HPVRLTGLVIGVPQTFEYLDKMQERVVSFVTKHSHISEEKFKELMFSKGNLTRDIGTNVI 215 Query: 226 GYDAVKYGLMDEVGGIGAALSRLNGMI 252 G DAV YGL+DEVGGIG A+ +L +I Sbjct: 216 GTDAVTYGLIDEVGGIGKAMQKLTELI 242 >C2U133.1 C2U133_BACCE Translocation-enhancing protein tepA Length = 249 Score = 311 bits (796), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 150/219 (68%), Positives = 182/219 (83%), Gaps = 1/219 (0%) Query: 47 VKELGQTAVPT-GEPDIFCITIIGQIEGHFVLPPHNKTTKYEHIIPQLVAAEQSKTIKGL 105 +++LGQT VP E I C+TIIGQ+EGH LPP NKTTKYEHIIPQ+VA EQ+ I+GL Sbjct: 29 IQQLGQTNVPQMNESRIHCLTIIGQVEGHVQLPPQNKTTKYEHIIPQIVAIEQNPKIEGL 88 Query: 106 LIILNTVGGDVEAGLAIAEMIASLSKPTVTVVIGGGHSIGVPIAVASSYSIIAESATMTI 165 L+ILNTVGGDVEAGLAIAEM+ASLSKPTV++V+GGGHSIGVPIAV++ YS IAE+ATMTI Sbjct: 89 LLILNTVGGDVEAGLAIAEMVASLSKPTVSLVLGGGHSIGVPIAVSTDYSFIAETATMTI 148 Query: 166 HPIRMNGLVIGVPQTFEYMERMQERMVRFVTSHSRISEQQFKDLMFRTGELNRDIGTAVG 225 HPIR+ GLVIGVPQTFEY+++MQER++RFVT HS+++E +FK+LMF G L RDIGT V Sbjct: 149 HPIRLTGLVIGVPQTFEYLDKMQERVIRFVTKHSKVTEDRFKELMFAKGNLTRDIGTNVI 208 Query: 226 GYDAVKYGLMDEVGGIGAALSRLNGMIAGETGQLVEQVM 264 G DAVKYGL+D+VGGIG+AL +LN +I E M Sbjct: 209 GGDAVKYGLIDDVGGIGSALQKLNELIEARADDNAEGTM 247 >Q5WFV8.1 Q5WFV8_BACSK Translocation-enhancing protein TepA Length = 243 Score = 311 bits (796), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 147/207 (71%), Positives = 182/207 (87%), Gaps = 1/207 (0%) Query: 47 VKELGQTAVPT-GEPDIFCITIIGQIEGHFVLPPHNKTTKYEHIIPQLVAAEQSKTIKGL 105 +++LGQ+ VP G +I C+T++GQIEGH LPP NKTTKYEH+IPQLVA EQ+ I+GL Sbjct: 26 IQQLGQSNVPDMGASNIHCMTVVGQIEGHMQLPPQNKTTKYEHMIPQLVAVEQNPKIEGL 85 Query: 106 LIILNTVGGDVEAGLAIAEMIASLSKPTVTVVIGGGHSIGVPIAVASSYSIIAESATMTI 165 LIILNTVGGDVEAGLA++EMIAS+SKPTVT+V+GGGHSIGVPIA A+SYS IAE+ATMTI Sbjct: 86 LIILNTVGGDVEAGLALSEMIASISKPTVTLVLGGGHSIGVPIATAASYSFIAETATMTI 145 Query: 166 HPIRMNGLVIGVPQTFEYMERMQERMVRFVTSHSRISEQQFKDLMFRTGELNRDIGTAVG 225 HP+R+ GLVIGVPQTFEY+++MQ+R++RFVTSHS+ISE++FK+LMF G L RDIGT V Sbjct: 146 HPVRLTGLVIGVPQTFEYLDKMQDRVIRFVTSHSQISEEKFKELMFSKGNLTRDIGTNVI 205 Query: 226 GYDAVKYGLMDEVGGIGAALSRLNGMI 252 G DAV+YGL++EVGGIG A+ +LN MI Sbjct: 206 GTDAVEYGLINEVGGIGQAIRKLNEMI 232 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.135 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,559,830,394 Number of extensions: 65400610 Number of successful extensions: 219982 Number of sequences better than 1.0e-05: 187 Number of HSP's gapped: 219997 Number of HSP's successfully gapped: 187 Length of query: 270 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 137 Effective length of database: 1,807,701,208 Effective search space: 247655065496 Effective search space used: 247655065496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)