BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0280.0023.p
         (70 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DLG3.1 B1DLG3_9BACL Putative uncharacterized protein                 69   1e-10
C0GIY4.1 C0GIY4_9FIRM Putative uncharacterized protein                 55   3e-06
B3KII8.1 B3KII8_9BACI Putative uncharacterized protein                 55   3e-06

>B1DLG3.1 B1DLG3_9BACL Putative uncharacterized protein
          Length = 75

 Score = 68.9 bits (167), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 43/67 (64%)

Query: 1  MTLYTVIPLEQVFEGAVSFMEPLEEVSFQGLLMQVEPLDRGRARIVRLLDCPLEKYLDPA 60
          MTLYT++PLE V +G     EP +EV   G+ MQV+P+  G  +IVRLL C L+ YL P 
Sbjct: 1  MTLYTIMPLENVLDGIHGEPEPSQEVWVNGVFMQVQPVAAGMGKIVRLLHCSLDDYLKPE 60

Query: 61 FSPGAII 67
           +PG  +
Sbjct: 61 LAPGNFV 67


>C0GIY4.1 C0GIY4_9FIRM Putative uncharacterized protein
          Length = 72

 Score = 54.7 bits (130), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 3  LYTVIPLEQVFEGAVSFMEPLEEVSFQ-GLLMQVEPLDRGRARIVRLLDCPLEKYLDPAF 61
          LYT++PLE V EG+ S+     E+ ++ G  + VE   + +A++VRL+      YLDPA 
Sbjct: 2  LYTIMPLEVVMEGSDSYQPKYSEIPWKNGGTLMVEETGQNQAKVVRLISSNPADYLDPAV 61

Query: 62 SPGAIISWK 70
           PG II +K
Sbjct: 62 QPGCIIEYK 70


>B3KII8.1 B3KII8_9BACI Putative uncharacterized protein
          Length = 80

 Score = 54.7 bits (130), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 5/72 (6%)

Query: 1  MTLYTVIPLEQVFEGAVSFMEP---LEEVSFQGLLMQVEPLDRGRARIVRLLDCPLEKYL 57
          MT Y+V+PL+      +  +EP     EV   G+LM+V+P+   + +IVRLLDC L  YL
Sbjct: 1  MTWYSVMPLDPTI--GMLQVEPEVMSREVRVDGILMEVKPVTEDQVKIVRLLDCGLHDYL 58

Query: 58 DPAFSPGAIISW 69
          +P ++PG +I +
Sbjct: 59 NPRYAPGIMIRY 70


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.324    0.142    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 421,045,660
Number of extensions: 13167083
Number of successful extensions: 21473
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 21478
Number of HSP's successfully gapped: 3
Length of query: 70
Length of database: 3,060,696,203
Length adjustment: 41
Effective length of query: 29
Effective length of database: 2,674,434,588
Effective search space: 77558603052
Effective search space used: 77558603052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 126 (53.1 bits)