BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0280.0018.p (255 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIJ8.1 B3KIJ8_9BACI Short-chain dehydrogenase/reductase SDR 408 e-112 B1DLF8.1 B1DLF8_9BACL Short-chain dehydrogenase/reductase SDR 353 6e-96 C0ZF22.1 C0ZF22_BREBN Putative 3-oxoacyl-[acyl-carrier protein] ... 218 3e-55 C0EII3.1 C0EII3_9CLOT Putative uncharacterized protein 212 2e-53 A7VYG3.1 A7VYG3_9CLOT Putative uncharacterized protein 211 4e-53 >B3KIJ8.1 B3KIJ8_9BACI Short-chain dehydrogenase/reductase SDR Length = 256 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 188/251 (74%), Positives = 219/251 (87%) Query: 5 GENSKPIGEMTVLITXXXXXXXXXXXERFASVGMNIVIHYMNSHEAANDVARRCMALGAK 64 G KPIGEMTVLIT ERFASV MN+VIHYMNSHEAAN+VARRCMA GAK Sbjct: 6 GRELKPIGEMTVLITGASRGIGAAVAERFASVRMNVVIHYMNSHEAANEVARRCMAYGAK 65 Query: 65 VMTVAADMKDRSQLVRMAERLAASGMQPDILVNNAGKAHYGMLADVTEEEWDEIMAVNLK 124 V+TV+AD++D+ Q++RM E+L + GM+PDILVNNAG +HYG+L+DVTEE+WD +M++NL+ Sbjct: 66 VLTVSADLRDKEQILRMKEKLQSHGMEPDILVNNAGVSHYGLLSDVTEEQWDTLMSINLR 125 Query: 125 GTFLCSQIFMPYMVSQRYGRIINVSSVWGISGASCEVAYSASKGGVNAFTKALAKELAPS 184 G FLCSQ FM MVSQR+GRIINVSS+WG+SGASCEV YS SKGGVNAFTKALAKELAPS Sbjct: 126 GMFLCSQAFMGRMVSQRFGRIINVSSIWGLSGASCEVLYSTSKGGVNAFTKALAKELAPS 185 Query: 185 GVTVNAVAPGAVQTAMLANLQADEMRMLEDEIPAGRLASPEEISSLVYFLALPESGYITG 244 GVTVNAVAPGAV T+ML +L++DE+RMLEDEIP GRLA P+EISSLVYFLALPESGYITG Sbjct: 186 GVTVNAVAPGAVDTSMLGHLESDEIRMLEDEIPVGRLAQPDEISSLVYFLALPESGYITG 245 Query: 245 QIISPNGGWIT 255 Q+ISPNGGW+T Sbjct: 246 QVISPNGGWVT 256 >B1DLF8.1 B1DLF8_9BACL Short-chain dehydrogenase/reductase SDR Length = 248 Score = 353 bits (907), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 165/247 (66%), Positives = 194/247 (78%) Query: 9 KPIGEMTVLITXXXXXXXXXXXERFASVGMNIVIHYMNSHEAANDVARRCMALGAKVMTV 68 KP +MTVLIT +RFA+ G+NIVIHY SHEAAN+ AR CM LGA VMT+ Sbjct: 2 KPFKQMTVLITGGSRGIGAAIAQRFAAEGLNIVIHYRESHEAANETARACMRLGANVMTI 61 Query: 69 AADMKDRSQLVRMAERLAASGMQPDILVNNAGKAHYGMLADVTEEEWDEIMAVNLKGTFL 128 +AD++ + QL RM E+L A M PDILVNN G +HYGML DVTE+EWD++MAVNLKG FL Sbjct: 62 SADLRSKEQLTRMKEKLEAHDMLPDILVNNGGISHYGMLMDVTEQEWDDVMAVNLKGMFL 121 Query: 129 CSQIFMPYMVSQRYGRIINVSSVWGISGASCEVAYSASKGGVNAFTKALAKELAPSGVTV 188 SQ+FMP M+S R+GRIINVSS+WG+SGASCEV YS +KGG+NAFTKALAKELAPSGVTV Sbjct: 122 SSQLFMPNMISNRFGRIINVSSIWGMSGASCEVLYSTTKGGMNAFTKALAKELAPSGVTV 181 Query: 189 NAVAPGAVQTAMLANLQADEMRMLEDEIPAGRLASPEEISSLVYFLALPESGYITGQIIS 248 NAVAPGAV T M++ +E LE EIP GR P+E++SLVYFL+LPES YITGQIIS Sbjct: 182 NAVAPGAVDTKMMSGFNDEEKAALEQEIPLGRFGQPDEVASLVYFLSLPESSYITGQIIS 241 Query: 249 PNGGWIT 255 PNGGW T Sbjct: 242 PNGGWHT 248 >C0ZF22.1 C0ZF22_BREBN Putative 3-oxoacyl-[acyl-carrier protein] reductase EC=1.1.1.100 Length = 245 Score = 218 bits (556), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 100/219 (45%), Positives = 146/219 (66%), Gaps = 3/219 (1%) Query: 37 GMNIVIHYMNSHEAANDVARRCMALGAKVMTVAADMKDRSQLVRMAERLAASGMQPDILV 96 G+ + +HY + E + ++C G + AD++D Q+ M A + + P ++V Sbjct: 30 GVPLYLHYNRNKEKLEPLVQKCQERGVPFGILQADLRDPQQIAAM---FAQTQVAPLLIV 86 Query: 97 NNAGKAHYGMLADVTEEEWDEIMAVNLKGTFLCSQIFMPYMVSQRYGRIINVSSVWGISG 156 NNA G+ DVT E++DE++A+N++ FL Q +P M+ RYGRI+N+SS+WG++G Sbjct: 87 NNASVDDVGLFTDVTVEKFDELLALNVRSAFLVCQAAVPAMLRARYGRIVNISSIWGLTG 146 Query: 157 ASCEVAYSASKGGVNAFTKALAKELAPSGVTVNAVAPGAVQTAMLANLQADEMRMLEDEI 216 SCEV YS +KG +N FTKALAKE+AP+G+TVNAVAPGA+ M+ DEM M+ +EI Sbjct: 147 GSCEVLYSMTKGAINTFTKALAKEMAPNGITVNAVAPGAIAGGMMERFAPDEMEMIAEEI 206 Query: 217 PAGRLASPEEISSLVYFLALPESGYITGQIISPNGGWIT 255 PA RL P E++++V FL +S Y+TGQ+ISPNGGW T Sbjct: 207 PANRLGQPYEVAAVVRFLLSADSSYVTGQVISPNGGWYT 245 >C0EII3.1 C0EII3_9CLOT Putative uncharacterized protein Length = 273 Score = 212 bits (540), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 104/240 (43%), Positives = 142/240 (59%) Query: 15 TVLITXXXXXXXXXXXERFASVGMNIVIHYMNSHEAANDVARRCMALGAKVMTVAADMKD 74 TVL+T FA +G I+Y + + A + G + AD+ D Sbjct: 33 TVLVTGASRGIGAAIAGTFAQMGYQTAINYCSHPQQAEQLVSGLTGQGLRAAAFGADVSD 92 Query: 75 RSQLVRMAERLAASGMQPDILVNNAGKAHYGMLADVTEEEWDEIMAVNLKGTFLCSQIFM 134 R Q+ RM + DILVNNAG A + D+TEEEWD + AVN+KG F C Q + Sbjct: 93 REQVARMFSEIKREFGGVDILVNNAGVAQQKLFTDITEEEWDRLFAVNVKGAFFCCQEAL 152 Query: 135 PYMVSQRYGRIINVSSVWGISGASCEVAYSASKGGVNAFTKALAKELAPSGVTVNAVAPG 194 P+M+ + G+I+N+SS+WG++GASCEV YSASK + TKALAKEL PSG+ VN VAPG Sbjct: 153 PHMIHHKRGKIVNISSIWGLTGASCEVHYSASKAALIGLTKALAKELGPSGIQVNCVAPG 212 Query: 195 AVQTAMLANLQADEMRMLEDEIPAGRLASPEEISSLVYFLALPESGYITGQIISPNGGWI 254 + T M A L A+ + L++E P G L + +I+ V FLA + +ITGQ ISPNGG++ Sbjct: 213 VIDTEMNAALDAETIEALKEETPLGTLGTGRDIAETVAFLASDRADFITGQTISPNGGFV 272 >A7VYG3.1 A7VYG3_9CLOT Putative uncharacterized protein Length = 244 Score = 211 bits (538), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 103/222 (46%), Positives = 141/222 (63%) Query: 33 FASVGMNIVIHYMNSHEAANDVARRCMALGAKVMTVAADMKDRSQLVRMAERLAASGMQP 92 FA G + VI+Y S A +AR G V+ V AD+ D Q+ + +R A+ Sbjct: 22 FARKGYSTVINYHRSESEALSLARSLTQEGCSVLAVQADVSDPVQVKELFQRTEAAFGGL 81 Query: 93 DILVNNAGKAHYGMLADVTEEEWDEIMAVNLKGTFLCSQIFMPYMVSQRYGRIINVSSVW 152 +ILVNNAG + G+ D T +WD + VN+KG FLCSQ + + G+I+NVSS+W Sbjct: 82 EILVNNAGISQTGLFTDCTPRQWDRVFGVNVKGAFLCSQQAASLFLREHRGKIVNVSSIW 141 Query: 153 GISGASCEVAYSASKGGVNAFTKALAKELAPSGVTVNAVAPGAVQTAMLANLQADEMRML 212 GI+GASCE YSASK + TK+LAKEL PSG+ VN VAPG V T M A L +E++ L Sbjct: 142 GITGASCEAVYSASKAALIGLTKSLAKELGPSGIQVNCVAPGVVDTKMNAGLTPEELQAL 201 Query: 213 EDEIPAGRLASPEEISSLVYFLALPESGYITGQIISPNGGWI 254 DE P G + + E+I+ ++FLA PES +ITGQ++SPNGG++ Sbjct: 202 RDETPLGVIGTSEDIAQAIWFLASPESDFITGQVLSPNGGFL 243 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.130 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,319,484,303 Number of extensions: 46914949 Number of successful extensions: 213097 Number of sequences better than 1.0e-05: 29727 Number of HSP's gapped: 180866 Number of HSP's successfully gapped: 29798 Length of query: 255 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 122 Effective length of database: 1,807,701,208 Effective search space: 220539547376 Effective search space used: 220539547376 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)