BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0280.0017.p
         (80 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KIJ9.1 B3KIJ9_9BACI YmfJ                                            129   8e-29
B1DLF7.1 B1DLF7_9BACL Putative uncharacterized protein                 98   2e-19
C1PG15.1 C1PG15_BACCO Putative uncharacterized protein                 87   4e-16
Q65JF7.1 Q65JF7_BACLD YmfJ                                             86   1e-15
B7GJN8.1 B7GJN8_ANOFW Uncharacterized conserved protein                86   1e-15

>B3KIJ9.1 B3KIJ9_9BACI YmfJ
          Length = 84

 Score =  129 bits (324), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 59/80 (73%), Positives = 71/80 (88%)

Query: 1  VKNFDTWKSFLGERVIQAEKMGMSEETISKLAFEIGEFLDKKVDPGNYSNRAIKELWDVG 60
          +KNFD+WK FLGERV+QAEK GMSE+TIS+LA+EIG+FLD+KVDP N SNRA+KELWDVG
Sbjct: 5  IKNFDSWKKFLGERVVQAEKAGMSEDTISQLAYEIGDFLDEKVDPQNSSNRALKELWDVG 64

Query: 61 TDDEKQTIASLMVKLAKKNA 80
           ++E+  IA LMVKLAK NA
Sbjct: 65 NEEERHVIARLMVKLAKNNA 84


>B1DLF7.1 B1DLF7_9BACL Putative uncharacterized protein
          Length = 83

 Score = 98.2 bits (243), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 58/78 (74%)

Query: 1  VKNFDTWKSFLGERVIQAEKMGMSEETISKLAFEIGEFLDKKVDPGNYSNRAIKELWDVG 60
          + +FD WK FL +RV QA+  GMSEETI  LA+EIG FLD+KVDP N   R +K+LWD G
Sbjct: 5  LSSFDNWKEFLSDRVAQAKNNGMSEETIHNLAYEIGSFLDEKVDPKNEQQRVLKQLWDAG 64

Query: 61 TDDEKQTIASLMVKLAKK 78
           + E++T+A LMVKL ++
Sbjct: 65 DEHERKTVAGLMVKLVEQ 82


>C1PG15.1 C1PG15_BACCO Putative uncharacterized protein
          Length = 86

 Score = 87.0 bits (214), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 59/79 (74%)

Query: 2  KNFDTWKSFLGERVIQAEKMGMSEETISKLAFEIGEFLDKKVDPGNYSNRAIKELWDVGT 61
          +N+D WK+FLG+R+ QA++ GM +ETI+KLA ++G++L  +VDP N   R + +LW V +
Sbjct: 5  ENWDQWKNFLGDRLNQAKQQGMPQETINKLAEQVGDYLAAQVDPKNEQERVLADLWSVAS 64

Query: 62 DDEKQTIASLMVKLAKKNA 80
           +E+Q IA++MVKL + N 
Sbjct: 65 QEEQQAIANVMVKLVQNNG 83


>Q65JF7.1 Q65JF7_BACLD YmfJ
          Length = 85

 Score = 85.9 bits (211), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 61/80 (76%)

Query: 1  VKNFDTWKSFLGERVIQAEKMGMSEETISKLAFEIGEFLDKKVDPGNYSNRAIKELWDVG 60
          + N+D WK+FLG+R+  A++ GMS+ETIS LA+EIG++L  +VD  N+  R + +LW V 
Sbjct: 4  LDNWDQWKNFLGDRLNYAQEQGMSKETISDLAYEIGDYLAGEVDSKNHQERVLADLWSVA 63

Query: 61 TDDEKQTIASLMVKLAKKNA 80
          +++E++ IA++MVKL + N+
Sbjct: 64 SEEEQRAIANVMVKLVENNS 83


>B7GJN8.1 B7GJN8_ANOFW Uncharacterized conserved protein
          Length = 84

 Score = 85.9 bits (211), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 55/75 (73%)

Query: 3  NFDTWKSFLGERVIQAEKMGMSEETISKLAFEIGEFLDKKVDPGNYSNRAIKELWDVGTD 62
          NF+ WKSFL +R+ QAE+ GM+++ IS +A++IG++L K+VDP N   R + +LW V  +
Sbjct: 8  NFEQWKSFLADRLHQAEEQGMNQQVISDIAYQIGDYLAKQVDPKNPEERVLADLWHVANE 67

Query: 63 DEKQTIASLMVKLAK 77
           E+  IA++M+KL +
Sbjct: 68 QEQHAIANMMIKLVQ 82


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.313    0.130    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 451,117,710
Number of extensions: 14437685
Number of successful extensions: 28522
Number of sequences better than 1.0e-05: 120
Number of HSP's gapped: 28522
Number of HSP's successfully gapped: 120
Length of query: 80
Length of database: 3,060,696,203
Length adjustment: 51
Effective length of query: 29
Effective length of database: 2,580,224,438
Effective search space: 74826508702
Effective search space used: 74826508702
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 125 (52.8 bits)