BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0280.0015.p (255 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIK0.1 B3KIK0_9BACI Amino acid-binding ACT domain protein 461 e-128 B1DLF6.1 B1DLF6_9BACL Amino acid-binding ACT domain protein 433 e-120 Q9KAA1.1 Q9KAA1_BACHD BH2389 protein 350 8e-95 C0ZF20.1 C0ZF20_BREBN Putative uncharacterized protein 350 9e-95 B7GJN7.1 B7GJN7_ANOFW ACT domain containing protein 350 9e-95 >B3KIK0.1 B3KIK0_9BACI Amino acid-binding ACT domain protein Length = 255 Score = 461 bits (1185), Expect = e-128, Method: Compositional matrix adjust. Identities = 222/255 (87%), Positives = 240/255 (94%) Query: 1 VEYKQWYMEYKIHKNRPGLLGDIASMLGMLEVNILTINGVEGKTRGMLLETSDDEKIMLM 60 +E QWYMEYKIHKNRPGLLGDIAS+LGMLEVNILTINGVEG+TRGMLLET D+EKI+LM Sbjct: 1 MESNQWYMEYKIHKNRPGLLGDIASVLGMLEVNILTINGVEGQTRGMLLETDDEEKIVLM 60 Query: 61 GEMLKKVDNITVTALRSPRLVDKLAVRHGRYIDRDSDDRKTFRFTRDELGLLVDFLGELF 120 G+ML K+ NITV+ALR P+LVD LAVRHGRYIDRDSDDRKTFRFTRDELGLLVDFLGELF Sbjct: 61 GKMLNKMKNITVSALRPPKLVDILAVRHGRYIDRDSDDRKTFRFTRDELGLLVDFLGELF 120 Query: 121 KREGNQVIGLRGMPRVGKTESIIAGSVCAMKRWTFVSSTLLRQTVRSQLAEDEMNPHNVF 180 KREGNQVIGLRGMPRVGKTESIIAGSVCAMKRWTFVSSTLLRQT+RSQL+EDEMN +N+F Sbjct: 121 KREGNQVIGLRGMPRVGKTESIIAGSVCAMKRWTFVSSTLLRQTIRSQLSEDEMNTNNIF 180 Query: 181 IIDGIVSTIRSNEKHYNLLQHVMSMPSTKVIEHPDIFVRESEYTYDDFDIIIELRNIPSE 240 IIDGIVSTIRSNE+HY LLQ +M M STKVIEHPDIFVRESEY+YDDFDIIIELRN P E Sbjct: 181 IIDGIVSTIRSNERHYQLLQDIMGMESTKVIEHPDIFVRESEYSYDDFDIIIELRNNPEE 240 Query: 241 EILYDSFTTSYSDDL 255 EI+YD+FT SYSDDL Sbjct: 241 EIVYDTFTGSYSDDL 255 >B1DLF6.1 B1DLF6_9BACL Amino acid-binding ACT domain protein Length = 257 Score = 433 bits (1113), Expect = e-120, Method: Compositional matrix adjust. Identities = 203/251 (80%), Positives = 235/251 (93%) Query: 4 KQWYMEYKIHKNRPGLLGDIASMLGMLEVNILTINGVEGKTRGMLLETSDDEKIMLMGEM 63 +Q+YMEYKIHKNRPGLLGDIAS+LGMLEVNI+TINGVE +TRGMLL+T D+EKI+L+G+M Sbjct: 5 QQYYMEYKIHKNRPGLLGDIASLLGMLEVNIMTINGVEDRTRGMLLQTDDEEKIVLLGKM 64 Query: 64 LKKVDNITVTALRSPRLVDKLAVRHGRYIDRDSDDRKTFRFTRDELGLLVDFLGELFKRE 123 L+KVDNITV LR+P +VD LAVRHGRYI+RDSDDRKTFRFTRDELG+LVDFLGE+FKR+ Sbjct: 65 LQKVDNITVNKLRTPTIVDILAVRHGRYIERDSDDRKTFRFTRDELGILVDFLGEVFKRD 124 Query: 124 GNQVIGLRGMPRVGKTESIIAGSVCAMKRWTFVSSTLLRQTVRSQLAEDEMNPHNVFIID 183 GNQVIGLRGMPRVGKTESIIAGSVC+ KRWTFVSSTLLRQTVRSQL+EDEMN +N+FIID Sbjct: 125 GNQVIGLRGMPRVGKTESIIAGSVCSNKRWTFVSSTLLRQTVRSQLSEDEMNDNNIFIID 184 Query: 184 GIVSTIRSNEKHYNLLQHVMSMPSTKVIEHPDIFVRESEYTYDDFDIIIELRNIPSEEIL 243 GIVSTIRSNEKHY+LLQ +M+MPSTKVIEHPDIF++ES+Y Y FD+IIELRN P EEI Sbjct: 185 GIVSTIRSNEKHYSLLQEIMAMPSTKVIEHPDIFIKESQYDYSHFDMIIELRNTPDEEIT 244 Query: 244 YDSFTTSYSDD 254 Y+SFT +YS++ Sbjct: 245 YESFTANYSEN 255 >Q9KAA1.1 Q9KAA1_BACHD BH2389 protein Length = 257 Score = 350 bits (897), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 161/249 (64%), Positives = 207/249 (83%) Query: 4 KQWYMEYKIHKNRPGLLGDIASMLGMLEVNILTINGVEGKTRGMLLETSDDEKIMLMGEM 63 K+WY+EY+IHKNRPGLLGDI+S+LGML NI+TINGV+ RGML+ + DD++I+ + Sbjct: 4 KEWYLEYQIHKNRPGLLGDISSILGMLSCNIVTINGVDDMRRGMLIRSVDDDQILRFRTI 63 Query: 64 LKKVDNITVTALRSPRLVDKLAVRHGRYIDRDSDDRKTFRFTRDELGLLVDFLGELFKRE 123 L+ +++ITVT R PRL D+LA+RHGRYI+RD+DDRKTFRF R ELGLLVDF+ ELFKR Sbjct: 64 LETIEDITVTKFREPRLRDRLAIRHGRYIERDADDRKTFRFVRMELGLLVDFMAELFKRN 123 Query: 124 GNQVIGLRGMPRVGKTESIIAGSVCAMKRWTFVSSTLLRQTVRSQLAEDEMNPHNVFIID 183 + +IG+RGMPRVGKTESI+A SVCA KRW+F+SSTLLRQTVRSQLA+DE++ +++IID Sbjct: 124 EHYLIGIRGMPRVGKTESIVAASVCANKRWSFISSTLLRQTVRSQLADDELSEEHIYIID 183 Query: 184 GIVSTIRSNEKHYNLLQHVMSMPSTKVIEHPDIFVRESEYTYDDFDIIIELRNIPSEEIL 243 GIVST+R+NEKH L++ +M +P+ KV+EHPDIF+RE+EY DDFD IIELRN EEI Sbjct: 184 GIVSTMRANEKHRMLVRDIMRLPAVKVVEHPDIFIRETEYELDDFDCIIELRNEEGEEIT 243 Query: 244 YDSFTTSYS 252 YD + +S Sbjct: 244 YDMVESGFS 252 >C0ZF20.1 C0ZF20_BREBN Putative uncharacterized protein Length = 259 Score = 350 bits (897), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 163/242 (67%), Positives = 207/242 (85%) Query: 4 KQWYMEYKIHKNRPGLLGDIASMLGMLEVNILTINGVEGKTRGMLLETSDDEKIMLMGEM 63 K+WYMEY+I +NRPGLLGD++S+LGML +NI+TINGV+ RGMLL T DDEK+ ++ + Sbjct: 5 KEWYMEYEIARNRPGLLGDVSSILGMLNINIVTINGVDTMRRGMLLLTDDDEKMEVLRNV 64 Query: 64 LKKVDNITVTALRSPRLVDKLAVRHGRYIDRDSDDRKTFRFTRDELGLLVDFLGELFKRE 123 ++K+DNIT+T LR P ++D+LAVRHGRYI+RDS+D+KTFRF R+ELGLLVDF+ E+ KRE Sbjct: 65 VQKMDNITITRLRPPTMLDRLAVRHGRYIERDSEDKKTFRFVREELGLLVDFMAEILKRE 124 Query: 124 GNQVIGLRGMPRVGKTESIIAGSVCAMKRWTFVSSTLLRQTVRSQLAEDEMNPHNVFIID 183 G+Q+IG+RGMPRVGKTES+IA SV A KRWTF+SSTLLRQTVRS LA DEM+ +V++ID Sbjct: 125 GHQLIGIRGMPRVGKTESMIAASVSANKRWTFISSTLLRQTVRSSLAIDEMSTDHVYLID 184 Query: 184 GIVSTIRSNEKHYNLLQHVMSMPSTKVIEHPDIFVRESEYTYDDFDIIIELRNIPSEEIL 243 GIVST+RS EKH+ LL+ +M+ P+ K+IEHPDIFVRESEY DDF IIELR+ P EEI Sbjct: 185 GIVSTLRSTEKHFTLLREIMNFPAAKIIEHPDIFVRESEYQLDDFHYIIELRHHPDEEIT 244 Query: 244 YD 245 Y+ Sbjct: 245 YE 246 >B7GJN7.1 B7GJN7_ANOFW ACT domain containing protein Length = 263 Score = 350 bits (897), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 165/245 (67%), Positives = 204/245 (83%) Query: 1 VEYKQWYMEYKIHKNRPGLLGDIASMLGMLEVNILTINGVEGKTRGMLLETSDDEKIMLM 60 +E K+WY+EY+IH NRPGLLGDIAS+LGML +NI+TINGV+ RGMLL E+I + Sbjct: 1 MEKKEWYLEYEIHINRPGLLGDIASLLGMLSINIITINGVDDSRRGMLLLCKSHEQIERL 60 Query: 61 GEMLKKVDNITVTALRSPRLVDKLAVRHGRYIDRDSDDRKTFRFTRDELGLLVDFLGELF 120 +L +++ITVT LR P+L D+LAVRHGRYI RD+DD+KTFRF RDELGLLVDF+ ELF Sbjct: 61 QSILATMEDITVTKLREPKLRDRLAVRHGRYIQRDADDKKTFRFVRDELGLLVDFMAELF 120 Query: 121 KREGNQVIGLRGMPRVGKTESIIAGSVCAMKRWTFVSSTLLRQTVRSQLAEDEMNPHNVF 180 K+EG+++IG+RGMPRVGKTESI+A SVCA KRW FVSSTL++QT+RSQL EDE + +NVF Sbjct: 121 KQEGHKLIGIRGMPRVGKTESIVAASVCANKRWLFVSSTLIKQTIRSQLIEDEYSENNVF 180 Query: 181 IIDGIVSTIRSNEKHYNLLQHVMSMPSTKVIEHPDIFVRESEYTYDDFDIIIELRNIPSE 240 IIDGIVST RSNE+H+ L++ +M +P+TKVIEHPDIFVR +EY DDFD IIELR+ E Sbjct: 181 IIDGIVSTRRSNERHWQLIRELMRLPATKVIEHPDIFVRHTEYKLDDFDYIIELRHDADE 240 Query: 241 EILYD 245 EI YD Sbjct: 241 EITYD 245 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,451,993,004 Number of extensions: 57076063 Number of successful extensions: 148532 Number of sequences better than 1.0e-05: 132 Number of HSP's gapped: 148524 Number of HSP's successfully gapped: 132 Length of query: 255 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 122 Effective length of database: 1,807,701,208 Effective search space: 220539547376 Effective search space used: 220539547376 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)